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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 756 |
| AccB1I | GGYRCC | 1 cut(s) | 847 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 792 |
| AciI | CCGC | 1 cut(s) | 358 |
| AclWI | GGATC | 6 cut(s) | 2, 116, 185, 224, 454, 704 |
| AcsI | RAATTY | 2 cut(s) | 424, 639 |
| AcuI | CTGAAG | 4 cut(s) | 200, 239, 474, 846 |
| AdeI | CACNNNGTG | 1 cut(s) | 740 |
| AfaI | GTAC | 3 cut(s) | 56, 212, 926 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 64, 205, 244, 345, 792 |
| AflII | CTTAAG | 1 cut(s) | 290 |
| AflIII | ACRYGT | 1 cut(s) | 399 |
| AgsI | TTSAA | 4 cut(s) | 262, 391, 553, 1036 |
| AjnI | CCWGG | 1 cut(s) | 617 |
| AluBI | AGCT | 1 cut(s) | 559 |
| AluI | AGCT | 1 cut(s) | 559 |
| AlwI | GGATC | 6 cut(s) | 2, 116, 185, 224, 454, 704 |
| AoxI | GGCC | 4 cut(s) | 620, 778, 814, 1018 |
| ApeKI | GCWGC | 1 cut(s) | 956 |
| ApoI | RAATTY | 2 cut(s) | 424, 639 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 252 |
| AspLEI | GCGC | 3 cut(s) | 408, 798, 812 |
| AspS9I | GGNCC | 2 cut(s) | 779, 815 |
| AsuC2I | CCSGG | 1 cut(s) | 1094 |
| AsuHPI | GGTGA | 1 cut(s) | 163 |
| AxyI | CCTNAGG | 1 cut(s) | 645 |
| BaeGI | GKGCMC | 1 cut(s) | 850 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 38, 71 |
| BanI | GGYRCC | 1 cut(s) | 847 |
| BbsI | GAAGAC | 2 cut(s) | 269, 473 |
| BbvI | GCAGC | 1 cut(s) | 968 |
| BccI | CCATC | 2 cut(s) | 66, 797 |
| BciT130I | CCWGG | 1 cut(s) | 619 |
| BclI | TGATCA | 1 cut(s) | 561 |
| BcnI | CCSGG | 1 cut(s) | 1094 |
| BfaI | CTAG | 5 cut(s) | 195, 234, 503, 521, 819 |
| BfmI | CTRYAG | 1 cut(s) | 898 |
| BfoI | RGCGCY | 1 cut(s) | 813 |
| BfrI | CTTAAG | 1 cut(s) | 290 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 92 |
| BisI | GCNGC | 1 cut(s) | 957 |
| BlsI | GCNGC | 1 cut(s) | 958 |
| Bme1390I | CCNGG | 2 cut(s) | 619, 1094 |
| BmgT120I | GGNCC | 2 cut(s) | 779, 815 |
| BmiI | GGNNCC | 1 cut(s) | 849 |
| BmrFI | CCNGG | 2 cut(s) | 619, 1094 |
| BmrI | ACTGGG | 1 cut(s) | 214 |
| BmsI | GCATC | 3 cut(s) | 151, 274, 1078 |
| BmuI | ACTGGG | 1 cut(s) | 214 |
| BpiI | GAAGAC | 2 cut(s) | 269, 473 |
| BpuEI | CTTGAG | 1 cut(s) | 71 |
| BpuMI | CCSGG | 1 cut(s) | 1094 |
| BsaJI | CCNNGG | 1 cut(s) | 1092 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 64, 205, 244, 345, 792 |
| Bse1I | ACTGG | 2 cut(s) | 209, 511 |
| Bse21I | CCTNAGG | 1 cut(s) | 645 |
| Bse3DI | GCAATG | 1 cut(s) | 892 |
| BseBI | CCWGG | 1 cut(s) | 619 |
| BseDI | CCNNGG | 1 cut(s) | 1092 |
| BseGI | GGATG | 1 cut(s) | 289 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 64, 205, 244, 345, 792 |
| BseMI | GCAATG | 1 cut(s) | 892 |
| BseMII | CTCAG | 6 cut(s) | 12, 54, 167, 573, 636, 1091 |
| BseNI | ACTGG | 2 cut(s) | 209, 511 |
| BseSI | GKGCMC | 1 cut(s) | 850 |
| BseXI | GCAGC | 1 cut(s) | 968 |
| BseYI | CCCAGC | 1 cut(s) | 243 |
| BshFI | GGCC | 4 cut(s) | 622, 780, 816, 1020 |
| BshNI | GGYRCC | 1 cut(s) | 847 |
| BsiSI | CCGG | 1 cut(s) | 1094 |
| BslFI | GGGAC | 1 cut(s) | 309 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 64, 205, 244, 345, 792 |
| BsmFI | GGGAC | 1 cut(s) | 309 |
| BsnI | GGCC | 4 cut(s) | 622, 780, 816, 1020 |
| Bsp1286I | GDGCHC | 1 cut(s) | 850 |
| Bsp143I | GATC | 7 cut(s) | 7, 121, 190, 229, 459, 561, 709 |
| BspACI | CCGC | 1 cut(s) | 358 |
| BspANI | GGCC | 4 cut(s) | 622, 780, 816, 1020 |
| BspCNI | CTCAG | 6 cut(s) | 13, 53, 168, 574, 637, 1090 |
| BspHI | TCATGA | 2 cut(s) | 313, 760 |
| BspLI | GGNNCC | 1 cut(s) | 849 |
| BspPI | GGATC | 6 cut(s) | 2, 116, 185, 224, 454, 704 |
| BspT107I | GGYRCC | 1 cut(s) | 847 |
| BspTI | CTTAAG | 1 cut(s) | 290 |
| BsrDI | GCAATG | 1 cut(s) | 892 |
| BsrI | ACTGG | 2 cut(s) | 209, 511 |
| BssECI | CCNNGG | 1 cut(s) | 1092 |
| BssMI | GATC | 7 cut(s) | 7, 121, 190, 229, 459, 561, 709 |
| Bst2UI | CCWGG | 1 cut(s) | 619 |
| Bst4CI | ACNGT | 3 cut(s) | 279, 340, 671 |
| BstAFI | CTTAAG | 1 cut(s) | 290 |
| BstC8I | GCNNGC | 3 cut(s) | 362, 814, 943 |
| BstDEI | CTNAG | 7 cut(s) | 21, 40, 176, 582, 645, 852, 1077 |
| BstF5I | GGATG | 1 cut(s) | 289 |
| BstH2I | RGCGCY | 1 cut(s) | 813 |
| BstHHI | GCGC | 3 cut(s) | 408, 798, 812 |
| BstKTI | GATC | 7 cut(s) | 10, 124, 193, 232, 462, 564, 712 |
| BstMBI | GATC | 7 cut(s) | 7, 121, 190, 229, 459, 561, 709 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 92, 777, 942 |
| BstNI | CCWGG | 1 cut(s) | 619 |
| BstNSI | RCATGY | 3 cut(s) | 403, 420, 707 |
| BstSCI | CCNGG | 2 cut(s) | 617, 1092 |
| BstSFI | CTRYAG | 1 cut(s) | 898 |
| BstSLI | GKGCMC | 1 cut(s) | 850 |
| BstV1I | GCAGC | 1 cut(s) | 968 |
| BstV2I | GAAGAC | 2 cut(s) | 269, 473 |
| Bsu36I | CCTNAGG | 1 cut(s) | 645 |
| BsuRI | GGCC | 4 cut(s) | 622, 780, 816, 1020 |
| BtsCI | GGATG | 1 cut(s) | 289 |
| BtsI | GCAGTG | 1 cut(s) | 105 |
| BtsIMutI | CAGTG | 3 cut(s) | 105, 202, 350 |
| Cac8I | GCNNGC | 3 cut(s) | 362, 814, 943 |
| CciI | TCATGA | 2 cut(s) | 313, 760 |
| CfoI | GCGC | 3 cut(s) | 408, 798, 812 |
| Cfr13I | GGNCC | 2 cut(s) | 779, 815 |
| Csp6I | GTAC | 3 cut(s) | 55, 211, 925 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 100, 135 |
| CviQI | GTAC | 3 cut(s) | 55, 211, 925 |
| DdeI | CTNAG | 7 cut(s) | 21, 40, 176, 582, 645, 852, 1077 |
| DpnI | GATC | 7 cut(s) | 9, 123, 192, 231, 461, 563, 711 |
| DpnII | GATC | 7 cut(s) | 7, 121, 190, 229, 459, 561, 709 |
| DraIII | CACNNNGTG | 1 cut(s) | 740 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 756 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 756 |
| Eco147I | AGGCCT | 1 cut(s) | 622 |
| Eco57I | CTGAAG | 4 cut(s) | 200, 239, 474, 846 |
| Eco81I | CCTNAGG | 1 cut(s) | 645 |
| EcoO109I | RGGNCCY | 1 cut(s) | 779 |
| EcoRII | CCWGG | 1 cut(s) | 617 |
| FaqI | GGGAC | 1 cut(s) | 309 |
| FbaI | TGATCA | 1 cut(s) | 561 |
| Fnu4HI | GCNGC | 1 cut(s) | 957 |
| FokI | GGATG | 1 cut(s) | 296 |
| Fsp4HI | GCNGC | 1 cut(s) | 957 |
| FspBI | CTAG | 5 cut(s) | 195, 234, 503, 521, 819 |
| GlaI | GCGC | 3 cut(s) | 407, 797, 811 |
| GluI | GCNGC | 1 cut(s) | 957 |
| GsaI | CCCAGC | 1 cut(s) | 247 |
| HaeII | RGCGCY | 1 cut(s) | 813 |
| HaeIII | GGCC | 4 cut(s) | 622, 780, 816, 1020 |
| HapII | CCGG | 1 cut(s) | 1094 |
| HhaI | GCGC | 3 cut(s) | 408, 798, 812 |
| Hin6I | GCGC | 3 cut(s) | 406, 796, 810 |
| HinP1I | GCGC | 3 cut(s) | 406, 796, 810 |
| HincII | GTYRAC | 1 cut(s) | 1083 |
| HindII | GTYRAC | 1 cut(s) | 1083 |
| HinfI | GANTC | 5 cut(s) | 38, 469, 540, 909, 980 |
| HpaII | CCGG | 1 cut(s) | 1094 |
| HphI | GGTGA | 1 cut(s) | 163 |
| Hpy166II | GTNNAC | 2 cut(s) | 667, 1083 |
| Hpy188I | TCNGA | 4 cut(s) | 43, 73, 177, 1106 |
| Hpy188III | TCNNGA | 4 cut(s) | 314, 463, 644, 761 |
| Hpy8I | GTNNAC | 2 cut(s) | 667, 1083 |
| HpyAV | CCTTC | 7 cut(s) | 38, 224, 263, 429, 559, 870, 1007 |
| HpyCH4III | ACNGT | 3 cut(s) | 279, 340, 671 |
| HpyCH4IV | ACGT | 1 cut(s) | 298 |
| HpyCH4V | TGCA | 5 cut(s) | 574, 689, 734, 841, 1049 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 92, 777, 942 |
| HpyF3I | CTNAG | 7 cut(s) | 21, 40, 176, 582, 645, 852, 1077 |
| HpySE526I | ACGT | 1 cut(s) | 298 |
| HspAI | GCGC | 3 cut(s) | 406, 796, 810 |
| Ksp22I | TGATCA | 1 cut(s) | 561 |
| Kzo9I | GATC | 7 cut(s) | 7, 121, 190, 229, 459, 561, 709 |
| LmnI | GCTCC | 1 cut(s) | 330 |
| Lsp1109I | GCAGC | 1 cut(s) | 968 |
| LweI | GCATC | 3 cut(s) | 151, 274, 1078 |
| MaeI | CTAG | 5 cut(s) | 195, 234, 503, 521, 819 |
| MaeII | ACGT | 1 cut(s) | 298 |
| MalI | GATC | 7 cut(s) | 9, 123, 192, 231, 461, 563, 711 |
| MboI | GATC | 7 cut(s) | 7, 121, 190, 229, 459, 561, 709 |
| MboII | GAAGA | 4 cut(s) | 274, 461, 478, 1022 |
| MfeI | CAATTG | 1 cut(s) | 1044 |
| MhlI | GDGCHC | 1 cut(s) | 850 |
| MluCI | AATT | 7 cut(s) | 168, 332, 424, 639, 652, 961, 1044 |
| MlyI | GAGTC | 4 cut(s) | 32, 463, 918, 989 |
| MmeI | TCCRAC | 2 cut(s) | 35, 607 |
| MnlI | CCTC | 9 cut(s) | 171, 579, 640, 770, 792, 963, 988, 1010, 1049 |
| MroXI | GAANNNNTTC | 1 cut(s) | 252 |
| MseI | TTAA | 4 cut(s) | 167, 291, 605, 1056 |
| MslI | CAYNNNNRTG | 1 cut(s) | 594 |
| MspCI | CTTAAG | 1 cut(s) | 290 |
| MspI | CCGG | 1 cut(s) | 1094 |
| MspR9I | CCNGG | 2 cut(s) | 619, 1094 |
| MunI | CAATTG | 1 cut(s) | 1044 |
| MvaI | CCWGG | 1 cut(s) | 619 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 92, 777, 942 |
| NciI | CCSGG | 1 cut(s) | 1094 |
| NdeII | GATC | 7 cut(s) | 7, 121, 190, 229, 459, 561, 709 |
| NlaIV | GGNNCC | 1 cut(s) | 849 |
| NspI | RCATGY | 3 cut(s) | 403, 420, 707 |
| PagI | TCATGA | 2 cut(s) | 313, 760 |
| PceI | AGGCCT | 1 cut(s) | 622 |
| PciI | ACATGT | 1 cut(s) | 399 |
| PdmI | GAANNNNTTC | 1 cut(s) | 252 |
| PfeI | GAWTC | 1 cut(s) | 540 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 792 |
| PkrI | GCNGC | 1 cut(s) | 958 |
| PleI | GAGTC | 4 cut(s) | 32, 463, 917, 988 |
| PpsI | GAGTC | 4 cut(s) | 32, 463, 917, 988 |
| PscI | ACATGT | 1 cut(s) | 399 |
| Psp6I | CCWGG | 1 cut(s) | 617 |
| PspFI | CCCAGC | 1 cut(s) | 243 |
| PspGI | CCWGG | 1 cut(s) | 617 |
| PspN4I | GGNNCC | 1 cut(s) | 849 |
| PspPI | GGNCC | 2 cut(s) | 779, 815 |
| RsaI | GTAC | 3 cut(s) | 56, 212, 926 |
| RsaNI | GTAC | 3 cut(s) | 55, 211, 925 |
| RseI | CAYNNNNRTG | 1 cut(s) | 594 |
| SaqAI | TTAA | 4 cut(s) | 167, 291, 605, 1056 |
| SatI | GCNGC | 1 cut(s) | 957 |
| Sau3AI | GATC | 7 cut(s) | 7, 121, 190, 229, 459, 561, 709 |
| Sau96I | GGNCC | 2 cut(s) | 779, 815 |
| SchI | GAGTC | 4 cut(s) | 32, 463, 918, 989 |
| ScrFI | CCNGG | 2 cut(s) | 619, 1094 |
| SduI | GDGCHC | 1 cut(s) | 850 |
| SfaNI | GCATC | 3 cut(s) | 151, 274, 1078 |
| SfcI | CTRYAG | 1 cut(s) | 898 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 594 |
| SmlI | CTYRAG | 2 cut(s) | 50, 290 |
| SmoI | CTYRAG | 2 cut(s) | 50, 290 |
| Sse9I | AATT | 7 cut(s) | 168, 332, 424, 639, 652, 961, 1044 |
| SseBI | AGGCCT | 1 cut(s) | 622 |
| SsiI | CCGC | 1 cut(s) | 358 |
| SspMI | CTAG | 5 cut(s) | 195, 234, 503, 521, 819 |
| StuI | AGGCCT | 1 cut(s) | 622 |
| StyD4I | CCNGG | 2 cut(s) | 617, 1092 |
| TaaI | ACNGT | 3 cut(s) | 279, 340, 671 |
| TaiI | ACGT | 1 cut(s) | 301 |
| TaqI | TCGA | 2 cut(s) | 16, 775 |
| TasI | AATT | 7 cut(s) | 168, 332, 424, 639, 652, 961, 1044 |
| TfiI | GAWTC | 1 cut(s) | 540 |
| Tru1I | TTAA | 4 cut(s) | 167, 291, 605, 1056 |
| Tru9I | TTAA | 4 cut(s) | 167, 291, 605, 1056 |
| TscAI | CASTG | 3 cut(s) | 112, 209, 350 |
| TseI | GCWGC | 1 cut(s) | 956 |
| TspDTI | ATGAA | 4 cut(s) | 150, 302, 366, 903 |
| TspRI | CASTG | 3 cut(s) | 112, 209, 350 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 792 |
| Vha464I | CTTAAG | 1 cut(s) | 290 |
| XapI | RAATTY | 2 cut(s) | 424, 639 |
| XceI | RCATGY | 3 cut(s) | 403, 420, 707 |
| XmnI | GAANNNNTTC | 1 cut(s) | 252 |
| XspI | CTAG | 5 cut(s) | 195, 234, 503, 521, 819 |