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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 630 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 576 |
| AciI | CCGC | 1 cut(s) | 474 |
| AclWI | GGATC | 2 cut(s) | 58, 256 |
| AcoI | YGGCCR | 4 cut(s) | 3, 78, 139, 161 |
| AcsI | RAATTY | 1 cut(s) | 441 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 576 |
| AgsI | TTSAA | 2 cut(s) | 409, 492 |
| AjiI | CACGTC | 2 cut(s) | 506, 536 |
| AleI | CACNNNNGTG | 1 cut(s) | 107 |
| AluBI | AGCT | 1 cut(s) | 361 |
| AluI | AGCT | 1 cut(s) | 361 |
| AlwI | GGATC | 2 cut(s) | 58, 256 |
| AoxI | GGCC | 7 cut(s) | 3, 78, 99, 139, 161, 553, 562 |
| ApeKI | GCWGC | 1 cut(s) | 145 |
| ApoI | RAATTY | 1 cut(s) | 441 |
| AspLEI | GCGC | 1 cut(s) | 129 |
| AspS9I | GGNCC | 3 cut(s) | 553, 563, 599 |
| AvaII | GGWCC | 1 cut(s) | 599 |
| BaeGI | GKGCMC | 1 cut(s) | 633 |
| BanI | GGYRCC | 1 cut(s) | 630 |
| BbsI | GAAGAC | 1 cut(s) | 275 |
| BbvI | GCAGC | 1 cut(s) | 132 |
| BccI | CCATC | 1 cut(s) | 581 |
| BceAI | ACGGC | 1 cut(s) | 540 |
| BclI | TGATCA | 2 cut(s) | 363, 607 |
| BfaI | CTAG | 5 cut(s) | 105, 305, 323, 603, 626 |
| BfoI | RGCGCY | 1 cut(s) | 130 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 525, 561 |
| BisI | GCNGC | 1 cut(s) | 146 |
| BlsI | GCNGC | 1 cut(s) | 147 |
| Bme18I | GGWCC | 1 cut(s) | 599 |
| BmgBI | CACGTC | 2 cut(s) | 506, 536 |
| BmgT120I | GGNCC | 3 cut(s) | 553, 563, 599 |
| BmiI | GGNNCC | 2 cut(s) | 73, 632 |
| BpiI | GAAGAC | 1 cut(s) | 275 |
| BsaJI | CCNNGG | 3 cut(s) | 67, 75, 556 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 576 |
| Bse118I | RCCGGY | 1 cut(s) | 141 |
| Bse1I | ACTGG | 1 cut(s) | 313 |
| BseDI | CCNNGG | 3 cut(s) | 67, 75, 556 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 576 |
| BseMII | CTCAG | 1 cut(s) | 375 |
| BseNI | ACTGG | 1 cut(s) | 313 |
| BseRI | GAGGAG | 1 cut(s) | 132 |
| BseSI | GKGCMC | 1 cut(s) | 633 |
| BseXI | GCAGC | 1 cut(s) | 132 |
| BsgI | GTGCAG | 2 cut(s) | 131, 131 |
| BshFI | GGCC | 7 cut(s) | 5, 80, 101, 141, 163, 555, 564 |
| BshNI | GGYRCC | 1 cut(s) | 630 |
| BsiSI | CCGG | 4 cut(s) | 6, 15, 142, 164 |
| BslFI | GGGAC | 1 cut(s) | 546 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 576 |
| BsmFI | GGGAC | 1 cut(s) | 546 |
| BsnI | GGCC | 7 cut(s) | 5, 80, 101, 141, 163, 555, 564 |
| Bsp1286I | GDGCHC | 1 cut(s) | 633 |
| Bsp143I | GATC | 4 cut(s) | 63, 261, 363, 607 |
| BspACI | CCGC | 1 cut(s) | 474 |
| BspANI | GGCC | 7 cut(s) | 5, 80, 101, 141, 163, 555, 564 |
| BspCNI | CTCAG | 1 cut(s) | 376 |
| BspLI | GGNNCC | 2 cut(s) | 73, 632 |
| BspPI | GGATC | 2 cut(s) | 58, 256 |
| BspT107I | GGYRCC | 1 cut(s) | 630 |
| BsrFI | RCCGGY | 1 cut(s) | 141 |
| BsrI | ACTGG | 1 cut(s) | 313 |
| BssAI | RCCGGY | 1 cut(s) | 141 |
| BssECI | CCNNGG | 3 cut(s) | 67, 75, 556 |
| BssMI | GATC | 4 cut(s) | 63, 261, 363, 607 |
| BssT1I | CCWWGG | 1 cut(s) | 67 |
| Bst6I | CTCTTC | 1 cut(s) | 223 |
| BstC8I | GCNNGC | 2 cut(s) | 143, 150 |
| BstDEI | CTNAG | 2 cut(s) | 384, 635 |
| BstDSI | CCRYGG | 1 cut(s) | 556 |
| BstH2I | RGCGCY | 1 cut(s) | 130 |
| BstHHI | GCGC | 1 cut(s) | 129 |
| BstKTI | GATC | 4 cut(s) | 66, 264, 366, 610 |
| BstMBI | GATC | 4 cut(s) | 63, 261, 363, 607 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 11, 525, 561 |
| BstSLI | GKGCMC | 1 cut(s) | 633 |
| BstV1I | GCAGC | 1 cut(s) | 132 |
| BstV2I | GAAGAC | 1 cut(s) | 275 |
| BsuRI | GGCC | 7 cut(s) | 5, 80, 101, 141, 163, 555, 564 |
| BtgI | CCRYGG | 1 cut(s) | 556 |
| BtrI | CACGTC | 2 cut(s) | 506, 536 |
| BtsI | GCAGTG | 1 cut(s) | 421 |
| BtsIMutI | CAGTG | 1 cut(s) | 421 |
| Cac8I | GCNNGC | 2 cut(s) | 143, 150 |
| CfoI | GCGC | 1 cut(s) | 129 |
| Cfr10I | RCCGGY | 1 cut(s) | 141 |
| Cfr13I | GGNCC | 3 cut(s) | 553, 563, 599 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 517, 552 |
| CviAII | CATG | 2 cut(s) | 522, 611 |
| DdeI | CTNAG | 2 cut(s) | 384, 635 |
| DpnI | GATC | 4 cut(s) | 65, 263, 365, 609 |
| DpnII | GATC | 4 cut(s) | 63, 261, 363, 607 |
| EaeI | YGGCCR | 4 cut(s) | 3, 78, 139, 161 |
| Eam1104I | CTCTTC | 1 cut(s) | 223 |
| EarI | CTCTTC | 1 cut(s) | 223 |
| EciI | GGCGGA | 1 cut(s) | 489 |
| Eco130I | CCWWGG | 1 cut(s) | 67 |
| Eco47I | GGWCC | 1 cut(s) | 599 |
| EcoO109I | RGGNCCY | 1 cut(s) | 563 |
| EcoT14I | CCWWGG | 1 cut(s) | 67 |
| ErhI | CCWWGG | 1 cut(s) | 67 |
| FaeI | CATG | 2 cut(s) | 525, 614 |
| FaqI | GGGAC | 1 cut(s) | 546 |
| FatI | CATG | 2 cut(s) | 521, 610 |
| FbaI | TGATCA | 2 cut(s) | 363, 607 |
| Fnu4HI | GCNGC | 1 cut(s) | 146 |
| Fsp4HI | GCNGC | 1 cut(s) | 146 |
| FspBI | CTAG | 5 cut(s) | 105, 305, 323, 603, 626 |
| GlaI | GCGC | 1 cut(s) | 128 |
| GluI | GCNGC | 1 cut(s) | 146 |
| HaeII | RGCGCY | 1 cut(s) | 130 |
| HaeIII | GGCC | 7 cut(s) | 5, 80, 101, 141, 163, 555, 564 |
| HapII | CCGG | 4 cut(s) | 6, 15, 142, 164 |
| HhaI | GCGC | 1 cut(s) | 129 |
| Hin1II | CATG | 2 cut(s) | 525, 614 |
| Hin6I | GCGC | 1 cut(s) | 127 |
| HinP1I | GCGC | 1 cut(s) | 127 |
| HinfI | GANTC | 4 cut(s) | 9, 176, 271, 342 |
| HpaII | CCGG | 4 cut(s) | 6, 15, 142, 164 |
| Hpy188III | TCNNGA | 3 cut(s) | 265, 406, 446 |
| HpyAV | CCTTC | 5 cut(s) | 175, 179, 201, 233, 653 |
| HpyCH4IV | ACGT | 2 cut(s) | 505, 535 |
| HpyCH4V | TGCA | 5 cut(s) | 41, 112, 148, 376, 419 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 11, 525, 561 |
| HpyF3I | CTNAG | 2 cut(s) | 384, 635 |
| HpySE526I | ACGT | 2 cut(s) | 505, 535 |
| Hsp92II | CATG | 2 cut(s) | 525, 614 |
| HspAI | GCGC | 1 cut(s) | 127 |
| KroI | GCCGGC | 1 cut(s) | 141 |
| KroNI | GCCGGC | 1 cut(s) | 143 |
| Ksp22I | TGATCA | 2 cut(s) | 363, 607 |
| Kzo9I | GATC | 4 cut(s) | 63, 261, 363, 607 |
| LmnI | GCTCC | 2 cut(s) | 134, 579 |
| LpnPI | CCDG | 9 cut(s) | 19, 28, 138, 155, 177, 278, 326, 459, 582 |
| Lsp1109I | GCAGC | 1 cut(s) | 132 |
| MaeI | CTAG | 5 cut(s) | 105, 305, 323, 603, 626 |
| MaeII | ACGT | 2 cut(s) | 505, 535 |
| MalI | GATC | 4 cut(s) | 65, 263, 365, 609 |
| MboI | GATC | 4 cut(s) | 63, 261, 363, 607 |
| MboII | GAAGA | 9 cut(s) | 36, 61, 179, 201, 204, 223, 240, 263, 280 |
| MhlI | GDGCHC | 1 cut(s) | 633 |
| MluCI | AATT | 4 cut(s) | 441, 454, 487, 670 |
| MlyI | GAGTC | 1 cut(s) | 265 |
| MmeI | TCCRAC | 1 cut(s) | 481 |
| MroNI | GCCGGC | 1 cut(s) | 141 |
| MseI | TTAA | 1 cut(s) | 354 |
| MslI | CAYNNNNRTG | 1 cut(s) | 107 |
| MspI | CCGG | 4 cut(s) | 6, 15, 142, 164 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 11, 525, 561 |
| NaeI | GCCGGC | 1 cut(s) | 143 |
| NdeII | GATC | 4 cut(s) | 63, 261, 363, 607 |
| NgoMIV | GCCGGC | 1 cut(s) | 141 |
| NlaIII | CATG | 2 cut(s) | 525, 614 |
| NlaIV | GGNNCC | 2 cut(s) | 73, 632 |
| NmeAIII | GCCGAG | 1 cut(s) | 56 |
| OliI | CACNNNNGTG | 1 cut(s) | 107 |
| PdiI | GCCGGC | 1 cut(s) | 143 |
| PfeI | GAWTC | 3 cut(s) | 9, 176, 342 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 576 |
| PkrI | GCNGC | 1 cut(s) | 147 |
| PleI | GAGTC | 1 cut(s) | 265 |
| PpsI | GAGTC | 1 cut(s) | 265 |
| PspN4I | GGNNCC | 2 cut(s) | 73, 632 |
| PspPI | GGNCC | 3 cut(s) | 553, 563, 599 |
| RseI | CAYNNNNRTG | 1 cut(s) | 107 |
| SaqAI | TTAA | 1 cut(s) | 354 |
| SatI | GCNGC | 1 cut(s) | 146 |
| Sau3AI | GATC | 4 cut(s) | 63, 261, 363, 607 |
| Sau96I | GGNCC | 3 cut(s) | 553, 563, 599 |
| SchI | GAGTC | 1 cut(s) | 265 |
| SduI | GDGCHC | 1 cut(s) | 633 |
| SetI | ASST | 9 cut(s) | 73, 353, 363, 372, 486, 508, 538, 624, 636 |
| SfiI | GGCCNNNNNGGCC | 1 cut(s) | 561 |
| SinI | GGWCC | 1 cut(s) | 599 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 107 |
| Sse9I | AATT | 4 cut(s) | 441, 454, 487, 670 |
| SsiI | CCGC | 1 cut(s) | 474 |
| SspMI | CTAG | 5 cut(s) | 105, 305, 323, 603, 626 |
| StyI | CCWWGG | 1 cut(s) | 67 |
| TaiI | ACGT | 2 cut(s) | 508, 538 |
| TaqI | TCGA | 3 cut(s) | 22, 62, 179 |
| TasI | AATT | 4 cut(s) | 441, 454, 487, 670 |
| TfiI | GAWTC | 3 cut(s) | 9, 176, 342 |
| Tru1I | TTAA | 1 cut(s) | 354 |
| Tru9I | TTAA | 1 cut(s) | 354 |
| TscAI | CASTG | 1 cut(s) | 421 |
| TseI | GCWGC | 1 cut(s) | 145 |
| TspDTI | ATGAA | 4 cut(s) | 62, 282, 411, 482 |
| TspRI | CASTG | 1 cut(s) | 421 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 576 |
| VpaK11BI | GGWCC | 1 cut(s) | 599 |
| XapI | RAATTY | 1 cut(s) | 441 |
| XspI | CTAG | 5 cut(s) | 105, 305, 323, 603, 626 |