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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 648 |
| AccB1I | GGYRCC | 1 cut(s) | 733 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 684 |
| AciI | CCGC | 2 cut(s) | 202, 669 |
| AclWI | GGATC | 3 cut(s) | 2, 185, 596 |
| AcsI | RAATTY | 2 cut(s) | 259, 513 |
| AcuI | CTGAAG | 4 cut(s) | 200, 348, 540, 732 |
| AcvI | CACGTG | 2 cut(s) | 614, 632 |
| AdeI | CACNNNGTG | 1 cut(s) | 632 |
| AfaI | GTAC | 1 cut(s) | 401 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 64, 205, 306, 684 |
| AflII | CTTAAG | 1 cut(s) | 251 |
| AgsI | TTSAA | 5 cut(s) | 53, 223, 305, 427, 481 |
| AjiI | CACGTC | 1 cut(s) | 596 |
| AluBI | AGCT | 1 cut(s) | 524 |
| AluI | AGCT | 1 cut(s) | 524 |
| AlwI | GGATC | 3 cut(s) | 2, 185, 596 |
| AoxI | GGCC | 3 cut(s) | 494, 661, 670 |
| ApoI | RAATTY | 2 cut(s) | 259, 513 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 213 |
| AspLEI | GCGC | 2 cut(s) | 690, 704 |
| AspS9I | GGNCC | 3 cut(s) | 137, 661, 671 |
| AsuHPI | GGTGA | 1 cut(s) | 163 |
| AvaII | GGWCC | 1 cut(s) | 137 |
| BaeGI | GKGCMC | 1 cut(s) | 736 |
| BanI | GGYRCC | 1 cut(s) | 733 |
| BbrPI | CACGTG | 2 cut(s) | 614, 632 |
| BbsI | GAAGAC | 2 cut(s) | 230, 347 |
| BccI | CCATC | 1 cut(s) | 689 |
| BceAI | ACGGC | 1 cut(s) | 648 |
| BclI | TGATCA | 1 cut(s) | 435 |
| BfaI | CTAG | 3 cut(s) | 195, 377, 705 |
| BfmI | CTRYAG | 1 cut(s) | 784 |
| BfoI | RGCGCY | 1 cut(s) | 705 |
| BfrI | CTTAAG | 1 cut(s) | 251 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 92, 669 |
| BisI | GCNGC | 1 cut(s) | 670 |
| BlsI | GCNGC | 1 cut(s) | 671 |
| Bme18I | GGWCC | 1 cut(s) | 137 |
| BmgBI | CACGTC | 1 cut(s) | 596 |
| BmgT120I | GGNCC | 3 cut(s) | 137, 661, 671 |
| BmiI | GGNNCC | 2 cut(s) | 572, 735 |
| BmsI | GCATC | 1 cut(s) | 235 |
| BpiI | GAAGAC | 2 cut(s) | 230, 347 |
| BsaAI | YACGTR | 2 cut(s) | 614, 632 |
| BsaJI | CCNNGG | 1 cut(s) | 664 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 64, 205, 306, 684 |
| Bse1I | ACTGG | 1 cut(s) | 385 |
| Bse3DI | GCAATG | 2 cut(s) | 281, 778 |
| BseDI | CCNNGG | 1 cut(s) | 664 |
| BseGI | GGATG | 1 cut(s) | 250 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 64, 205, 306, 684 |
| BseMI | GCAATG | 2 cut(s) | 281, 778 |
| BseMII | CTCAG | 4 cut(s) | 12, 54, 167, 447 |
| BseNI | ACTGG | 1 cut(s) | 385 |
| BseSI | GKGCMC | 1 cut(s) | 736 |
| BseYI | CCCAGC | 1 cut(s) | 204 |
| BshFI | GGCC | 3 cut(s) | 496, 663, 672 |
| BshNI | GGYRCC | 1 cut(s) | 733 |
| BslFI | GGGAC | 2 cut(s) | 517, 654 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 64, 205, 306, 684 |
| BsmFI | GGGAC | 2 cut(s) | 517, 654 |
| BsnI | GGCC | 3 cut(s) | 496, 663, 672 |
| Bsp1286I | GDGCHC | 1 cut(s) | 736 |
| Bsp143I | GATC | 4 cut(s) | 7, 190, 435, 601 |
| BspACI | CCGC | 2 cut(s) | 202, 669 |
| BspANI | GGCC | 3 cut(s) | 496, 663, 672 |
| BspCNI | CTCAG | 4 cut(s) | 13, 53, 168, 448 |
| BspHI | TCATGA | 1 cut(s) | 274 |
| BspLI | GGNNCC | 2 cut(s) | 572, 735 |
| BspPI | GGATC | 3 cut(s) | 2, 185, 596 |
| BspT107I | GGYRCC | 1 cut(s) | 733 |
| BspTI | CTTAAG | 1 cut(s) | 251 |
| BsrDI | GCAATG | 2 cut(s) | 281, 778 |
| BsrI | ACTGG | 1 cut(s) | 385 |
| BssECI | CCNNGG | 1 cut(s) | 664 |
| BssMI | GATC | 4 cut(s) | 7, 190, 435, 601 |
| Bst4CI | ACNGT | 4 cut(s) | 62, 141, 240, 301 |
| BstAFI | CTTAAG | 1 cut(s) | 251 |
| BstBAI | YACGTR | 2 cut(s) | 614, 632 |
| BstC8I | GCNNGC | 1 cut(s) | 323 |
| BstDEI | CTNAG | 5 cut(s) | 21, 40, 176, 456, 738 |
| BstDSI | CCRYGG | 1 cut(s) | 664 |
| BstF5I | GGATG | 1 cut(s) | 250 |
| BstH2I | RGCGCY | 1 cut(s) | 705 |
| BstHHI | GCGC | 2 cut(s) | 690, 704 |
| BstKTI | GATC | 4 cut(s) | 10, 193, 438, 604 |
| BstMBI | GATC | 4 cut(s) | 7, 190, 435, 601 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 92, 669 |
| BstSFI | CTRYAG | 1 cut(s) | 784 |
| BstSLI | GKGCMC | 1 cut(s) | 736 |
| BstV2I | GAAGAC | 2 cut(s) | 230, 347 |
| BsuRI | GGCC | 3 cut(s) | 496, 663, 672 |
| BtgI | CCRYGG | 1 cut(s) | 664 |
| BtrI | CACGTC | 1 cut(s) | 596 |
| BtsCI | GGATG | 1 cut(s) | 250 |
| BtsI | GCAGTG | 1 cut(s) | 105 |
| BtsIMutI | CAGTG | 1 cut(s) | 105 |
| Cac8I | GCNNGC | 1 cut(s) | 323 |
| CciI | TCATGA | 1 cut(s) | 274 |
| CfoI | GCGC | 2 cut(s) | 690, 704 |
| Cfr13I | GGNCC | 3 cut(s) | 137, 661, 671 |
| Csp6I | GTAC | 1 cut(s) | 400 |
| CviAII | CATG | 4 cut(s) | 275, 644, 713, 780 |
| CviJI | RGCY | 7 cut(s) | 5, 198, 455, 496, 524, 663, 672 |
| CviKI_1 | RGCY | 7 cut(s) | 5, 198, 455, 496, 524, 663, 672 |
| CviQI | GTAC | 1 cut(s) | 400 |
| DdeI | CTNAG | 5 cut(s) | 21, 40, 176, 456, 738 |
| DpnI | GATC | 4 cut(s) | 9, 192, 437, 603 |
| DpnII | GATC | 4 cut(s) | 7, 190, 435, 601 |
| DraIII | CACNNNGTG | 1 cut(s) | 632 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 648 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 648 |
| Eco147I | AGGCCT | 1 cut(s) | 496 |
| Eco47I | GGWCC | 1 cut(s) | 137 |
| Eco57I | CTGAAG | 4 cut(s) | 200, 348, 540, 732 |
| Eco72I | CACGTG | 2 cut(s) | 614, 632 |
| FaeI | CATG | 4 cut(s) | 278, 647, 716, 783 |
| FaqI | GGGAC | 2 cut(s) | 517, 654 |
| FatI | CATG | 4 cut(s) | 274, 643, 712, 779 |
| FbaI | TGATCA | 1 cut(s) | 435 |
| Fnu4HI | GCNGC | 1 cut(s) | 670 |
| FokI | GGATG | 1 cut(s) | 257 |
| Fsp4HI | GCNGC | 1 cut(s) | 670 |
| FspBI | CTAG | 3 cut(s) | 195, 377, 705 |
| GlaI | GCGC | 2 cut(s) | 689, 703 |
| GluI | GCNGC | 1 cut(s) | 670 |
| GsaI | CCCAGC | 1 cut(s) | 208 |
| HaeII | RGCGCY | 1 cut(s) | 705 |
| HaeIII | GGCC | 3 cut(s) | 496, 663, 672 |
| HhaI | GCGC | 2 cut(s) | 690, 704 |
| Hin1II | CATG | 4 cut(s) | 278, 647, 716, 783 |
| Hin6I | GCGC | 2 cut(s) | 688, 702 |
| HinP1I | GCGC | 2 cut(s) | 688, 702 |
| HinfI | GANTC | 3 cut(s) | 38, 414, 460 |
| HphI | GGTGA | 1 cut(s) | 163 |
| Hpy166II | GTNNAC | 1 cut(s) | 548 |
| Hpy188I | TCNGA | 4 cut(s) | 43, 73, 145, 177 |
| Hpy188III | TCNNGA | 3 cut(s) | 275, 518, 653 |
| Hpy8I | GTNNAC | 1 cut(s) | 548 |
| HpyAV | CCTTC | 3 cut(s) | 224, 433, 756 |
| HpyCH4III | ACNGT | 4 cut(s) | 62, 141, 240, 301 |
| HpyCH4IV | ACGT | 3 cut(s) | 595, 613, 631 |
| HpyCH4V | TGCA | 6 cut(s) | 448, 491, 563, 581, 626, 727 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 92, 669 |
| HpyF3I | CTNAG | 5 cut(s) | 21, 40, 176, 456, 738 |
| HpySE526I | ACGT | 3 cut(s) | 595, 613, 631 |
| Hsp92II | CATG | 4 cut(s) | 278, 647, 716, 783 |
| HspAI | GCGC | 2 cut(s) | 688, 702 |
| Ksp22I | TGATCA | 1 cut(s) | 435 |
| Kzo9I | GATC | 4 cut(s) | 7, 190, 435, 601 |
| LmnI | GCTCC | 1 cut(s) | 291 |
| LpnPI | CCDG | 6 cut(s) | 33, 190, 303, 398, 510, 531 |
| LweI | GCATC | 1 cut(s) | 235 |
| MaeI | CTAG | 3 cut(s) | 195, 377, 705 |
| MaeII | ACGT | 3 cut(s) | 595, 613, 631 |
| MaeIII | GTNAC | 1 cut(s) | 614 |
| MalI | GATC | 4 cut(s) | 9, 192, 437, 603 |
| MboI | GATC | 4 cut(s) | 7, 190, 435, 601 |
| MboII | GAAGA | 2 cut(s) | 235, 352 |
| MhlI | GDGCHC | 1 cut(s) | 736 |
| MluCI | AATT | 5 cut(s) | 81, 259, 369, 513, 526 |
| MlyI | GAGTC | 2 cut(s) | 32, 469 |
| MmeI | TCCRAC | 3 cut(s) | 35, 375, 571 |
| MnlI | CCTC | 5 cut(s) | 171, 209, 463, 684, 715 |
| MroXI | GAANNNNTTC | 1 cut(s) | 213 |
| MseI | TTAA | 2 cut(s) | 167, 252 |
| MspA1I | CMGCKG | 1 cut(s) | 204 |
| MspCI | CTTAAG | 1 cut(s) | 251 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 92, 669 |
| NdeII | GATC | 4 cut(s) | 7, 190, 435, 601 |
| NlaIII | CATG | 4 cut(s) | 278, 647, 716, 783 |
| NlaIV | GGNNCC | 2 cut(s) | 572, 735 |
| NmuCI | GTSAC | 1 cut(s) | 614 |
| PagI | TCATGA | 1 cut(s) | 274 |
| PceI | AGGCCT | 1 cut(s) | 496 |
| PdmI | GAANNNNTTC | 1 cut(s) | 213 |
| PfeI | GAWTC | 1 cut(s) | 414 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 684 |
| PkrI | GCNGC | 1 cut(s) | 671 |
| PleI | GAGTC | 2 cut(s) | 32, 468 |
| PmaCI | CACGTG | 2 cut(s) | 614, 632 |
| PmlI | CACGTG | 2 cut(s) | 614, 632 |
| PpsI | GAGTC | 2 cut(s) | 32, 468 |
| Ppu21I | YACGTR | 2 cut(s) | 614, 632 |
| PspCI | CACGTG | 2 cut(s) | 614, 632 |
| PspFI | CCCAGC | 1 cut(s) | 204 |
| PspN4I | GGNNCC | 2 cut(s) | 572, 735 |
| PspPI | GGNCC | 3 cut(s) | 137, 661, 671 |
| RsaI | GTAC | 1 cut(s) | 401 |
| RsaNI | GTAC | 1 cut(s) | 400 |
| SaqAI | TTAA | 2 cut(s) | 167, 252 |
| SatI | GCNGC | 1 cut(s) | 670 |
| Sau3AI | GATC | 4 cut(s) | 7, 190, 435, 601 |
| Sau96I | GGNCC | 3 cut(s) | 137, 661, 671 |
| SchI | GAGTC | 2 cut(s) | 32, 469 |
| SduI | GDGCHC | 1 cut(s) | 736 |
| SfaNI | GCATC | 1 cut(s) | 235 |
| SfcI | CTRYAG | 1 cut(s) | 784 |
| SfiI | GGCCNNNNNGGCC | 1 cut(s) | 669 |
| SinI | GGWCC | 1 cut(s) | 137 |
| SmlI | CTYRAG | 1 cut(s) | 251 |
| SmoI | CTYRAG | 1 cut(s) | 251 |
| Sse9I | AATT | 5 cut(s) | 81, 259, 369, 513, 526 |
| SseBI | AGGCCT | 1 cut(s) | 496 |
| SsiI | CCGC | 2 cut(s) | 202, 669 |
| SspMI | CTAG | 3 cut(s) | 195, 377, 705 |
| StuI | AGGCCT | 1 cut(s) | 496 |
| TaaI | ACNGT | 4 cut(s) | 62, 141, 240, 301 |
| TaiI | ACGT | 3 cut(s) | 598, 616, 634 |
| TaqI | TCGA | 1 cut(s) | 16 |
| TasI | AATT | 5 cut(s) | 81, 259, 369, 513, 526 |
| TauI | GCSGC | 1 cut(s) | 672 |
| TfiI | GAWTC | 1 cut(s) | 414 |
| Tru1I | TTAA | 2 cut(s) | 167, 252 |
| Tru9I | TTAA | 2 cut(s) | 167, 252 |
| TscAI | CASTG | 1 cut(s) | 112 |
| TseFI | GTSAC | 1 cut(s) | 614 |
| Tsp45I | GTSAC | 1 cut(s) | 614 |
| TspDTI | ATGAA | 3 cut(s) | 263, 327, 789 |
| TspGWI | ACGGA | 1 cut(s) | 60 |
| TspRI | CASTG | 1 cut(s) | 112 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 684 |
| Vha464I | CTTAAG | 1 cut(s) | 251 |
| VpaK11BI | GGWCC | 1 cut(s) | 137 |
| XapI | RAATTY | 2 cut(s) | 259, 513 |
| XmnI | GAANNNNTTC | 1 cut(s) | 213 |
| XspI | CTAG | 3 cut(s) | 195, 377, 705 |