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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 737 |
| AatII | GACGTC | 1 cut(s) | 741 |
| AciI | CCGC | 3 cut(s) | 13, 151, 308 |
| AclWI | GGATC | 2 cut(s) | 505, 566 |
| AcsI | RAATTY | 1 cut(s) | 441 |
| AcyI | GRCGYC | 1 cut(s) | 738 |
| AdeI | CACNNNGTG | 1 cut(s) | 541 |
| AfaI | GTAC | 1 cut(s) | 634 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 37, 138, 492 |
| AflII | CTTAAG | 1 cut(s) | 83 |
| AflIII | ACRYGT | 2 cut(s) | 201, 504 |
| AgsI | TTSAA | 4 cut(s) | 55, 193, 355, 409 |
| AjiI | CACGTC | 1 cut(s) | 221 |
| AluBI | AGCT | 1 cut(s) | 361 |
| AluI | AGCT | 1 cut(s) | 361 |
| Alw21I | GWGCWC | 1 cut(s) | 629 |
| Alw26I | GTCTC | 2 cut(s) | 227, 382 |
| AlwI | GGATC | 2 cut(s) | 505, 566 |
| AoxI | GGCC | 1 cut(s) | 422 |
| ApeKI | GCWGC | 1 cut(s) | 661 |
| ApoI | RAATTY | 1 cut(s) | 441 |
| AspLEI | GCGC | 1 cut(s) | 210 |
| AspS9I | GGNCC | 2 cut(s) | 310, 423 |
| AvaII | GGWCC | 1 cut(s) | 310 |
| BbsI | GAAGAC | 1 cut(s) | 62 |
| Bbv12I | GWGCWC | 1 cut(s) | 629 |
| BbvI | GCAGC | 1 cut(s) | 673 |
| BcoDI | GTCTC | 2 cut(s) | 227, 382 |
| BfaI | CTAG | 3 cut(s) | 27, 305, 734 |
| BfmI | CTRYAG | 2 cut(s) | 47, 606 |
| BfrI | CTTAAG | 1 cut(s) | 83 |
| BisI | GCNGC | 2 cut(s) | 14, 662 |
| BlsI | GCNGC | 2 cut(s) | 15, 663 |
| Bme18I | GGWCC | 1 cut(s) | 310 |
| BmgBI | CACGTC | 1 cut(s) | 221 |
| BmgT120I | GGNCC | 2 cut(s) | 310, 423 |
| BmrI | ACTGGG | 1 cut(s) | 438 |
| BmsI | GCATC | 3 cut(s) | 67, 563, 784 |
| BmuI | ACTGGG | 1 cut(s) | 438 |
| BpiI | GAAGAC | 1 cut(s) | 62 |
| BpmI | CTGGAG | 1 cut(s) | 344 |
| BsaHI | GRCGYC | 1 cut(s) | 738 |
| BsaJI | CCNNGG | 1 cut(s) | 447 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 37, 138, 492 |
| Bse1I | ACTGG | 3 cut(s) | 313, 433, 634 |
| Bse3DI | GCAATG | 2 cut(s) | 113, 750 |
| BseDI | CCNNGG | 1 cut(s) | 447 |
| BseGI | GGATG | 2 cut(s) | 82, 799 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 37, 138, 492 |
| BseMI | GCAATG | 2 cut(s) | 113, 750 |
| BseMII | CTCAG | 1 cut(s) | 375 |
| BseNI | ACTGG | 3 cut(s) | 313, 433, 634 |
| BseXI | GCAGC | 1 cut(s) | 673 |
| BseYI | CCCAGC | 1 cut(s) | 36 |
| BshFI | GGCC | 1 cut(s) | 424 |
| BsiHKAI | GWGCWC | 1 cut(s) | 629 |
| BslFI | GGGAC | 3 cut(s) | 102, 445, 563 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 37, 138, 492 |
| BsmAI | GTCTC | 2 cut(s) | 227, 382 |
| BsmBI | CGTCTC | 1 cut(s) | 227 |
| BsmFI | GGGAC | 3 cut(s) | 102, 445, 563 |
| BsnI | GGCC | 1 cut(s) | 424 |
| Bsp1286I | GDGCHC | 1 cut(s) | 629 |
| Bsp143I | GATC | 2 cut(s) | 510, 558 |
| BspACI | CCGC | 3 cut(s) | 13, 151, 308 |
| BspANI | GGCC | 1 cut(s) | 424 |
| BspCNI | CTCAG | 1 cut(s) | 376 |
| BspHI | TCATGA | 2 cut(s) | 106, 727 |
| BspPI | GGATC | 2 cut(s) | 505, 566 |
| BspTI | CTTAAG | 1 cut(s) | 83 |
| BsrDI | GCAATG | 2 cut(s) | 113, 750 |
| BsrI | ACTGG | 3 cut(s) | 313, 433, 634 |
| BssECI | CCNNGG | 1 cut(s) | 447 |
| BssMI | GATC | 2 cut(s) | 510, 558 |
| BssNI | GRCGYC | 1 cut(s) | 738 |
| BssT1I | CCWWGG | 1 cut(s) | 447 |
| Bst4CI | ACNGT | 4 cut(s) | 51, 72, 133, 176 |
| BstACI | GRCGYC | 1 cut(s) | 738 |
| BstAFI | CTTAAG | 1 cut(s) | 83 |
| BstC8I | GCNNGC | 1 cut(s) | 155 |
| BstDEI | CTNAG | 3 cut(s) | 8, 384, 783 |
| BstF5I | GGATG | 2 cut(s) | 82, 799 |
| BstHHI | GCGC | 1 cut(s) | 210 |
| BstKTI | GATC | 2 cut(s) | 513, 561 |
| BstMAI | GTCTC | 2 cut(s) | 227, 382 |
| BstMBI | GATC | 2 cut(s) | 510, 558 |
| BstNSI | RCATGY | 2 cut(s) | 205, 508 |
| BstSFI | CTRYAG | 2 cut(s) | 47, 606 |
| BstV1I | GCAGC | 1 cut(s) | 673 |
| BstV2I | GAAGAC | 1 cut(s) | 62 |
| BsuRI | GGCC | 1 cut(s) | 424 |
| BtrI | CACGTC | 1 cut(s) | 221 |
| BtsCI | GGATG | 2 cut(s) | 82, 799 |
| BtsIMutI | CAGTG | 3 cut(s) | 143, 426, 627 |
| Cac8I | GCNNGC | 1 cut(s) | 155 |
| CciI | TCATGA | 2 cut(s) | 106, 727 |
| CfoI | GCGC | 1 cut(s) | 210 |
| Cfr13I | GGNCC | 2 cut(s) | 310, 423 |
| Csp6I | GTAC | 1 cut(s) | 633 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 214, 249 |
| CviAII | CATG | 7 cut(s) | 107, 202, 505, 539, 553, 602, 728 |
| CviJI | RGCY | 8 cut(s) | 30, 322, 361, 369, 383, 424, 452, 704 |
| CviKI_1 | RGCY | 8 cut(s) | 30, 322, 361, 369, 383, 424, 452, 704 |
| CviQI | GTAC | 1 cut(s) | 633 |
| DdeI | CTNAG | 3 cut(s) | 8, 384, 783 |
| DpnI | GATC | 2 cut(s) | 512, 560 |
| DpnII | GATC | 2 cut(s) | 510, 558 |
| DraI | TTTAAA | 1 cut(s) | 691 |
| DraIII | CACNNNGTG | 1 cut(s) | 541 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 737 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 737 |
| Eco130I | CCWWGG | 1 cut(s) | 447 |
| Eco47I | GGWCC | 1 cut(s) | 310 |
| EcoT14I | CCWWGG | 1 cut(s) | 447 |
| ErhI | CCWWGG | 1 cut(s) | 447 |
| Esp3I | CGTCTC | 1 cut(s) | 227 |
| FaeI | CATG | 7 cut(s) | 110, 205, 508, 542, 556, 605, 731 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 762, 794 |
| FaqI | GGGAC | 3 cut(s) | 102, 445, 563 |
| FatI | CATG | 7 cut(s) | 106, 201, 504, 538, 552, 601, 727 |
| Fnu4HI | GCNGC | 2 cut(s) | 14, 662 |
| FokI | GGATG | 2 cut(s) | 89, 806 |
| Fsp4HI | GCNGC | 2 cut(s) | 14, 662 |
| FspBI | CTAG | 3 cut(s) | 27, 305, 734 |
| GlaI | GCGC | 1 cut(s) | 209 |
| GluI | GCNGC | 2 cut(s) | 14, 662 |
| GsaI | CCCAGC | 1 cut(s) | 40 |
| GsuI | CTGGAG | 1 cut(s) | 344 |
| HaeIII | GGCC | 1 cut(s) | 424 |
| HhaI | GCGC | 1 cut(s) | 210 |
| Hin1I | GRCGYC | 1 cut(s) | 738 |
| Hin1II | CATG | 7 cut(s) | 110, 205, 508, 542, 556, 605, 731 |
| Hin6I | GCGC | 1 cut(s) | 208 |
| HinP1I | GCGC | 1 cut(s) | 208 |
| HincII | GTYRAC | 2 cut(s) | 591, 742 |
| HindII | GTYRAC | 2 cut(s) | 591, 742 |
| HinfI | GANTC | 4 cut(s) | 23, 271, 342, 617 |
| Hpy166II | GTNNAC | 2 cut(s) | 591, 742 |
| Hpy188I | TCNGA | 1 cut(s) | 9 |
| Hpy188III | TCNNGA | 4 cut(s) | 107, 406, 728, 806 |
| Hpy8I | GTNNAC | 2 cut(s) | 591, 742 |
| HpyAV | CCTTC | 3 cut(s) | 231, 361, 713 |
| HpyCH4III | ACNGT | 4 cut(s) | 51, 72, 133, 176 |
| HpyCH4IV | ACGT | 4 cut(s) | 91, 220, 522, 738 |
| HpyCH4V | TGCA | 6 cut(s) | 376, 491, 527, 535, 576, 755 |
| HpyF3I | CTNAG | 3 cut(s) | 8, 384, 783 |
| HpySE526I | ACGT | 4 cut(s) | 91, 220, 522, 738 |
| Hsp92I | GRCGYC | 1 cut(s) | 738 |
| Hsp92II | CATG | 7 cut(s) | 110, 205, 508, 542, 556, 605, 731 |
| HspAI | GCGC | 1 cut(s) | 208 |
| Kzo9I | GATC | 2 cut(s) | 510, 558 |
| LmnI | GCTCC | 1 cut(s) | 123 |
| LpnPI | CCDG | 6 cut(s) | 22, 135, 308, 326, 414, 615 |
| Lsp1109I | GCAGC | 1 cut(s) | 673 |
| LweI | GCATC | 3 cut(s) | 67, 563, 784 |
| MaeI | CTAG | 3 cut(s) | 27, 305, 734 |
| MaeII | ACGT | 4 cut(s) | 91, 220, 522, 738 |
| MalI | GATC | 2 cut(s) | 512, 560 |
| MboI | GATC | 2 cut(s) | 510, 558 |
| MboII | GAAGA | 4 cut(s) | 67, 171, 263, 728 |
| MhlI | GDGCHC | 1 cut(s) | 629 |
| MluCI | AATT | 5 cut(s) | 125, 226, 441, 454, 669 |
| MlyI | GAGTC | 1 cut(s) | 265 |
| MnlI | CCTC | 6 cut(s) | 3, 391, 671, 694, 716, 766 |
| MseI | TTAA | 4 cut(s) | 84, 293, 690, 762 |
| MspCI | CTTAAG | 1 cut(s) | 83 |
| NdeII | GATC | 2 cut(s) | 510, 558 |
| NlaIII | CATG | 7 cut(s) | 110, 205, 508, 542, 556, 605, 731 |
| NmeAIII | GCCGAG | 1 cut(s) | 400 |
| NspI | RCATGY | 2 cut(s) | 205, 508 |
| PagI | TCATGA | 2 cut(s) | 106, 727 |
| PciI | ACATGT | 2 cut(s) | 201, 504 |
| PfeI | GAWTC | 3 cut(s) | 23, 342, 617 |
| PkrI | GCNGC | 2 cut(s) | 15, 663 |
| PleI | GAGTC | 1 cut(s) | 265 |
| PpsI | GAGTC | 1 cut(s) | 265 |
| PscI | ACATGT | 2 cut(s) | 201, 504 |
| PspFI | CCCAGC | 1 cut(s) | 36 |
| PspPI | GGNCC | 2 cut(s) | 310, 423 |
| RsaI | GTAC | 1 cut(s) | 634 |
| RsaNI | GTAC | 1 cut(s) | 633 |
| SaqAI | TTAA | 4 cut(s) | 84, 293, 690, 762 |
| SatI | GCNGC | 2 cut(s) | 14, 662 |
| Sau3AI | GATC | 2 cut(s) | 510, 558 |
| Sau96I | GGNCC | 2 cut(s) | 310, 423 |
| SchI | GAGTC | 1 cut(s) | 265 |
| SduI | GDGCHC | 1 cut(s) | 629 |
| SfaNI | GCATC | 3 cut(s) | 67, 563, 784 |
| SfcI | CTRYAG | 2 cut(s) | 47, 606 |
| SinI | GGWCC | 1 cut(s) | 310 |
| SmlI | CTYRAG | 1 cut(s) | 83 |
| SmoI | CTYRAG | 1 cut(s) | 83 |
| Sse9I | AATT | 5 cut(s) | 125, 226, 441, 454, 669 |
| SsiI | CCGC | 3 cut(s) | 13, 151, 308 |
| SspMI | CTAG | 3 cut(s) | 27, 305, 734 |
| StyI | CCWWGG | 1 cut(s) | 447 |
| TaaI | ACNGT | 4 cut(s) | 51, 72, 133, 176 |
| TaiI | ACGT | 4 cut(s) | 94, 223, 525, 741 |
| TasI | AATT | 5 cut(s) | 125, 226, 441, 454, 669 |
| TauI | GCSGC | 1 cut(s) | 16 |
| TfiI | GAWTC | 3 cut(s) | 23, 342, 617 |
| Tru1I | TTAA | 4 cut(s) | 84, 293, 690, 762 |
| Tru9I | TTAA | 4 cut(s) | 84, 293, 690, 762 |
| TscAI | CASTG | 3 cut(s) | 143, 433, 634 |
| TseI | GCWGC | 1 cut(s) | 661 |
| TspDTI | ATGAA | 4 cut(s) | 159, 482, 609, 611 |
| TspRI | CASTG | 3 cut(s) | 143, 433, 634 |
| Vha464I | CTTAAG | 1 cut(s) | 83 |
| VpaK11BI | GGWCC | 1 cut(s) | 310 |
| XapI | RAATTY | 1 cut(s) | 441 |
| XceI | RCATGY | 2 cut(s) | 205, 508 |
| XspI | CTAG | 3 cut(s) | 27, 305, 734 |
| ZraI | GACGTC | 1 cut(s) | 739 |