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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 53 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 243 |
| Acc36I | ACCTGC | 1 cut(s) | 53 |
| AccB1I | GGYRCC | 1 cut(s) | 228 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 265 |
| AciI | CCGC | 1 cut(s) | 775 |
| AclWI | GGATC | 1 cut(s) | 458 |
| AcoI | YGGCCR | 1 cut(s) | 216 |
| AcsI | RAATTY | 1 cut(s) | 479 |
| AfaI | GTAC | 2 cut(s) | 512, 668 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 200, 225, 265, 279, 520, 661, 762 |
| AflIII | ACRYGT | 2 cut(s) | 640, 816 |
| AgeI | ACCGGT | 1 cut(s) | 50 |
| AgsI | TTSAA | 2 cut(s) | 679, 808 |
| AjnI | CCWGG | 2 cut(s) | 24, 278 |
| AluBI | AGCT | 1 cut(s) | 337 |
| AluI | AGCT | 1 cut(s) | 337 |
| Alw21I | GWGCWC | 1 cut(s) | 78 |
| AlwI | GGATC | 1 cut(s) | 458 |
| AoxI | GGCC | 6 cut(s) | 19, 84, 216, 267, 318, 437 |
| ApeKI | GCWGC | 2 cut(s) | 344, 347 |
| ApoI | RAATTY | 1 cut(s) | 479 |
| AsiGI | ACCGGT | 1 cut(s) | 50 |
| AspLEI | GCGC | 2 cut(s) | 252, 825 |
| AspS9I | GGNCC | 2 cut(s) | 19, 438 |
| AsuC2I | CCSGG | 2 cut(s) | 226, 436 |
| AsuHPI | GGTGA | 1 cut(s) | 619 |
| AsuII | TTCGAA | 1 cut(s) | 189 |
| BaeGI | GKGCMC | 1 cut(s) | 233 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 494, 527 |
| BanI | GGYRCC | 1 cut(s) | 228 |
| BbsI | GAAGAC | 3 cut(s) | 186, 397, 686 |
| Bbv12I | GWGCWC | 1 cut(s) | 78 |
| BbvI | GCAGC | 2 cut(s) | 356, 359 |
| BccI | CCATC | 4 cut(s) | 177, 267, 451, 522 |
| BciT130I | CCWGG | 2 cut(s) | 26, 280 |
| BcnI | CCSGG | 2 cut(s) | 226, 436 |
| BfaI | CTAG | 3 cut(s) | 66, 299, 651 |
| BfoI | RGCGCY | 1 cut(s) | 253 |
| BfuAI | ACCTGC | 1 cut(s) | 53 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 317 |
| BisI | GCNGC | 2 cut(s) | 345, 348 |
| BlsI | GCNGC | 2 cut(s) | 346, 349 |
| Bme1390I | CCNGG | 4 cut(s) | 26, 226, 280, 436 |
| BmgT120I | GGNCC | 2 cut(s) | 19, 438 |
| BmiI | GGNNCC | 2 cut(s) | 30, 230 |
| BmrFI | CCNGG | 4 cut(s) | 26, 226, 280, 436 |
| BmsI | GCATC | 2 cut(s) | 331, 691 |
| BpiI | GAAGAC | 3 cut(s) | 186, 397, 686 |
| BpmI | CTGGAG | 3 cut(s) | 8, 15, 105 |
| Bpu14I | TTCGAA | 1 cut(s) | 189 |
| BpuEI | CTTGAG | 1 cut(s) | 527 |
| BpuMI | CCSGG | 2 cut(s) | 226, 436 |
| BsaJI | CCNNGG | 1 cut(s) | 199 |
| BsaWI | WCCGGW | 1 cut(s) | 50 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 200, 225, 265, 279, 520, 661, 762 |
| Bse118I | RCCGGY | 2 cut(s) | 50, 82 |
| BseBI | CCWGG | 2 cut(s) | 26, 280 |
| BseDI | CCNNGG | 1 cut(s) | 199 |
| BseGI | GGATG | 2 cut(s) | 169, 706 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 200, 225, 265, 279, 520, 661, 762 |
| BseMII | CTCAG | 2 cut(s) | 510, 623 |
| BseSI | GKGCMC | 1 cut(s) | 233 |
| BseXI | GCAGC | 2 cut(s) | 356, 359 |
| BseYI | CCCAGC | 1 cut(s) | 660 |
| BsgI | GTGCAG | 1 cut(s) | 31 |
| BshFI | GGCC | 6 cut(s) | 21, 86, 218, 269, 320, 439 |
| BshNI | GGYRCC | 1 cut(s) | 228 |
| BshTI | ACCGGT | 1 cut(s) | 50 |
| BsiHKAI | GWGCWC | 1 cut(s) | 78 |
| BsiSI | CCGG | 5 cut(s) | 51, 83, 215, 226, 436 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 200, 225, 265, 279, 520, 661, 762 |
| BsnI | GGCC | 6 cut(s) | 21, 86, 218, 269, 320, 439 |
| Bsp119I | TTCGAA | 1 cut(s) | 189 |
| Bsp1286I | GDGCHC | 2 cut(s) | 78, 233 |
| Bsp143I | GATC | 4 cut(s) | 132, 154, 306, 463 |
| BspACI | CCGC | 1 cut(s) | 775 |
| BspANI | GGCC | 6 cut(s) | 21, 86, 218, 269, 320, 439 |
| BspCNI | CTCAG | 2 cut(s) | 509, 624 |
| BspLI | GGNNCC | 2 cut(s) | 30, 230 |
| BspMI | ACCTGC | 1 cut(s) | 53 |
| BspPI | GGATC | 1 cut(s) | 458 |
| BspT104I | TTCGAA | 1 cut(s) | 189 |
| BspT107I | GGYRCC | 1 cut(s) | 228 |
| BsrFI | RCCGGY | 2 cut(s) | 50, 82 |
| BssAI | RCCGGY | 2 cut(s) | 50, 82 |
| BssECI | CCNNGG | 1 cut(s) | 199 |
| BssMI | GATC | 4 cut(s) | 132, 154, 306, 463 |
| Bst2UI | CCWGG | 2 cut(s) | 26, 280 |
| Bst4CI | ACNGT | 2 cut(s) | 696, 757 |
| Bst6I | CTCTTC | 1 cut(s) | 399 |
| BstBI | TTCGAA | 1 cut(s) | 189 |
| BstC8I | GCNNGC | 3 cut(s) | 6, 352, 779 |
| BstDEI | CTNAG | 3 cut(s) | 496, 632, 671 |
| BstF5I | GGATG | 2 cut(s) | 169, 706 |
| BstH2I | RGCGCY | 1 cut(s) | 253 |
| BstHHI | GCGC | 2 cut(s) | 252, 825 |
| BstKTI | GATC | 4 cut(s) | 135, 157, 309, 466 |
| BstMBI | GATC | 4 cut(s) | 132, 154, 306, 463 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 215, 317 |
| BstNI | CCWGG | 2 cut(s) | 26, 280 |
| BstNSI | RCATGY | 3 cut(s) | 354, 644, 820 |
| BstSCI | CCNGG | 4 cut(s) | 24, 224, 278, 434 |
| BstSLI | GKGCMC | 1 cut(s) | 233 |
| BstV1I | GCAGC | 2 cut(s) | 356, 359 |
| BstV2I | GAAGAC | 3 cut(s) | 186, 397, 686 |
| BsuRI | GGCC | 6 cut(s) | 21, 86, 218, 269, 320, 439 |
| BtsCI | GGATG | 2 cut(s) | 169, 706 |
| BtsI | GCAGTG | 1 cut(s) | 561 |
| BtsIMutI | CAGTG | 2 cut(s) | 561, 767 |
| BveI | ACCTGC | 1 cut(s) | 53 |
| Cac8I | GCNNGC | 3 cut(s) | 6, 352, 779 |
| CfoI | GCGC | 2 cut(s) | 252, 825 |
| Cfr10I | RCCGGY | 2 cut(s) | 50, 82 |
| Cfr13I | GGNCC | 2 cut(s) | 19, 438 |
| CseI | GACGC | 1 cut(s) | 402 |
| CsiI | ACCWGGT | 1 cut(s) | 278 |
| Csp6I | GTAC | 2 cut(s) | 511, 667 |
| CspAI | ACCGGT | 1 cut(s) | 50 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 829, 864 |
| CviAII | CATG | 4 cut(s) | 242, 351, 641, 817 |
| CviQI | GTAC | 2 cut(s) | 511, 667 |
| DdeI | CTNAG | 3 cut(s) | 496, 632, 671 |
| DpnI | GATC | 4 cut(s) | 134, 156, 308, 465 |
| DpnII | GATC | 4 cut(s) | 132, 154, 306, 463 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 243 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 243 |
| EaeI | YGGCCR | 1 cut(s) | 216 |
| Eam1104I | CTCTTC | 1 cut(s) | 399 |
| EarI | CTCTTC | 1 cut(s) | 399 |
| EciI | GGCGGA | 1 cut(s) | 764 |
| EcoRII | CCWGG | 2 cut(s) | 24, 278 |
| FaeI | CATG | 4 cut(s) | 245, 354, 644, 820 |
| FaiI | YATR | 8 cut(s) | 165, 243, 352, 371, 642, 732, 818, 865 |
| FatI | CATG | 4 cut(s) | 241, 350, 640, 816 |
| Fnu4HI | GCNGC | 2 cut(s) | 345, 348 |
| FokI | GGATG | 2 cut(s) | 156, 713 |
| Fsp4HI | GCNGC | 2 cut(s) | 345, 348 |
| FspBI | CTAG | 3 cut(s) | 66, 299, 651 |
| GlaI | GCGC | 2 cut(s) | 251, 824 |
| GluI | GCNGC | 2 cut(s) | 345, 348 |
| GsaI | CCCAGC | 1 cut(s) | 664 |
| GsuI | CTGGAG | 3 cut(s) | 8, 15, 105 |
| HaeII | RGCGCY | 1 cut(s) | 253 |
| HaeIII | GGCC | 6 cut(s) | 21, 86, 218, 269, 320, 439 |
| HapII | CCGG | 5 cut(s) | 51, 83, 215, 226, 436 |
| HgaI | GACGC | 1 cut(s) | 402 |
| HhaI | GCGC | 2 cut(s) | 252, 825 |
| Hin1II | CATG | 4 cut(s) | 245, 354, 644, 820 |
| Hin6I | GCGC | 2 cut(s) | 250, 823 |
| HinP1I | GCGC | 2 cut(s) | 250, 823 |
| HinfI | GANTC | 2 cut(s) | 494, 771 |
| HpaII | CCGG | 5 cut(s) | 51, 83, 215, 226, 436 |
| HphI | GGTGA | 1 cut(s) | 619 |
| Hpy188I | TCNGA | 5 cut(s) | 137, 306, 499, 529, 633 |
| Hpy188III | TCNNGA | 1 cut(s) | 152 |
| HpyAV | CCTTC | 3 cut(s) | 119, 494, 846 |
| HpyCH4III | ACNGT | 2 cut(s) | 696, 757 |
| HpyCH4V | TGCA | 3 cut(s) | 48, 344, 354 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 215, 317 |
| HpyF3I | CTNAG | 3 cut(s) | 496, 632, 671 |
| Hsp92II | CATG | 4 cut(s) | 245, 354, 644, 820 |
| HspAI | GCGC | 2 cut(s) | 250, 823 |
| Kzo9I | GATC | 4 cut(s) | 132, 154, 306, 463 |
| LmnI | GCTCC | 2 cut(s) | 34, 747 |
| Lsp1109I | GCAGC | 2 cut(s) | 356, 359 |
| LweI | GCATC | 2 cut(s) | 331, 691 |
| MabI | ACCWGGT | 1 cut(s) | 278 |
| MaeI | CTAG | 3 cut(s) | 66, 299, 651 |
| MaeIII | GTNAC | 1 cut(s) | 430 |
| MalI | GATC | 4 cut(s) | 134, 156, 308, 465 |
| MboI | GATC | 4 cut(s) | 132, 154, 306, 463 |
| MboII | GAAGA | 5 cut(s) | 191, 402, 413, 416, 691 |
| MhlI | GDGCHC | 2 cut(s) | 78, 233 |
| MluCI | AATT | 3 cut(s) | 479, 570, 841 |
| MlyI | GAGTC | 1 cut(s) | 488 |
| MmeI | TCCRAC | 1 cut(s) | 491 |
| MnlI | CCTC | 9 cut(s) | 32, 129, 209, 249, 266, 280, 301, 331, 627 |
| MseI | TTAA | 4 cut(s) | 623, 645, 708, 783 |
| MspI | CCGG | 5 cut(s) | 51, 83, 215, 226, 436 |
| MspR9I | CCNGG | 4 cut(s) | 26, 226, 280, 436 |
| MvaI | CCWGG | 2 cut(s) | 26, 280 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 215, 317 |
| NciI | CCSGG | 2 cut(s) | 226, 436 |
| NdeII | GATC | 4 cut(s) | 132, 154, 306, 463 |
| NlaIII | CATG | 4 cut(s) | 245, 354, 644, 820 |
| NlaIV | GGNNCC | 2 cut(s) | 30, 230 |
| NmeAIII | GCCGAG | 1 cut(s) | 180 |
| NmuCI | GTSAC | 1 cut(s) | 430 |
| NspI | RCATGY | 3 cut(s) | 354, 644, 820 |
| NspV | TTCGAA | 1 cut(s) | 189 |
| PaeI | GCATGC | 1 cut(s) | 354 |
| PaqCI | CACCTGC | 1 cut(s) | 53 |
| PciI | ACATGT | 2 cut(s) | 640, 816 |
| PfeI | GAWTC | 1 cut(s) | 771 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 265 |
| PinAI | ACCGGT | 1 cut(s) | 50 |
| PkrI | GCNGC | 2 cut(s) | 346, 349 |
| PleI | GAGTC | 1 cut(s) | 488 |
| PpsI | GAGTC | 1 cut(s) | 488 |
| PscI | ACATGT | 2 cut(s) | 640, 816 |
| Psp6I | CCWGG | 2 cut(s) | 24, 278 |
| PspFI | CCCAGC | 1 cut(s) | 660 |
| PspGI | CCWGG | 2 cut(s) | 24, 278 |
| PspN4I | GGNNCC | 2 cut(s) | 30, 230 |
| PspPI | GGNCC | 2 cut(s) | 19, 438 |
| RsaI | GTAC | 2 cut(s) | 512, 668 |
| RsaNI | GTAC | 2 cut(s) | 511, 667 |
| SaqAI | TTAA | 4 cut(s) | 623, 645, 708, 783 |
| SatI | GCNGC | 2 cut(s) | 345, 348 |
| Sau3AI | GATC | 4 cut(s) | 132, 154, 306, 463 |
| Sau96I | GGNCC | 2 cut(s) | 19, 438 |
| SchI | GAGTC | 1 cut(s) | 488 |
| ScrFI | CCNGG | 4 cut(s) | 26, 226, 280, 436 |
| SduI | GDGCHC | 2 cut(s) | 78, 233 |
| SexAI | ACCWGGT | 1 cut(s) | 278 |
| SfaNI | GCATC | 2 cut(s) | 331, 691 |
| SfuI | TTCGAA | 1 cut(s) | 189 |
| SgrAI | CRCCGGYG | 1 cut(s) | 50 |
| SmlI | CTYRAG | 1 cut(s) | 506 |
| SmoI | CTYRAG | 1 cut(s) | 506 |
| SphI | GCATGC | 1 cut(s) | 354 |
| Sse9I | AATT | 3 cut(s) | 479, 570, 841 |
| SsiI | CCGC | 1 cut(s) | 775 |
| SspMI | CTAG | 3 cut(s) | 66, 299, 651 |
| StyD4I | CCNGG | 4 cut(s) | 24, 224, 278, 434 |
| TaaI | ACNGT | 2 cut(s) | 696, 757 |
| TaqI | TCGA | 3 cut(s) | 189, 339, 472 |
| TasI | AATT | 3 cut(s) | 479, 570, 841 |
| TfiI | GAWTC | 1 cut(s) | 771 |
| Tru1I | TTAA | 4 cut(s) | 623, 645, 708, 783 |
| Tru9I | TTAA | 4 cut(s) | 623, 645, 708, 783 |
| TscAI | CASTG | 2 cut(s) | 568, 767 |
| TseFI | GTSAC | 1 cut(s) | 430 |
| TseI | GCWGC | 2 cut(s) | 344, 347 |
| Tsp45I | GTSAC | 1 cut(s) | 430 |
| TspDTI | ATGAA | 1 cut(s) | 606 |
| TspRI | CASTG | 2 cut(s) | 568, 767 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 265 |
| XapI | RAATTY | 1 cut(s) | 479 |
| XceI | RCATGY | 3 cut(s) | 354, 644, 820 |
| XspI | CTAG | 3 cut(s) | 66, 299, 651 |