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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 726 |
| AccBSI | CCGCTC | 1 cut(s) | 556 |
| AciI | CCGC | 2 cut(s) | 328, 556 |
| AclWI | GGATC | 3 cut(s) | 194, 424, 674 |
| AcsI | RAATTY | 2 cut(s) | 394, 609 |
| AcuI | CTGAAG | 2 cut(s) | 209, 444 |
| AcvI | CACGTG | 2 cut(s) | 692, 710 |
| AcyI | GRCGYC | 1 cut(s) | 236 |
| AdeI | CACNNNGTG | 1 cut(s) | 710 |
| AfaI | GTAC | 1 cut(s) | 56 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 64, 214, 315 |
| AflII | CTTAAG | 1 cut(s) | 260 |
| AgsI | TTSAA | 4 cut(s) | 232, 361, 523, 776 |
| AjiI | CACGTC | 1 cut(s) | 389 |
| AjnI | CCWGG | 1 cut(s) | 587 |
| AluBI | AGCT | 2 cut(s) | 529, 782 |
| AluI | AGCT | 2 cut(s) | 529, 782 |
| Alw26I | GTCTC | 1 cut(s) | 93 |
| AlwI | GGATC | 3 cut(s) | 194, 424, 674 |
| AoxI | GGCC | 3 cut(s) | 590, 739, 749 |
| ApoI | RAATTY | 2 cut(s) | 394, 609 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 222 |
| AspLEI | GCGC | 1 cut(s) | 378 |
| AspS9I | GGNCC | 3 cut(s) | 146, 739, 749 |
| AsuHPI | GGTGA | 1 cut(s) | 172 |
| AvaII | GGWCC | 1 cut(s) | 146 |
| AxyI | CCTNAGG | 1 cut(s) | 615 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 38, 71 |
| BbrPI | CACGTG | 2 cut(s) | 692, 710 |
| BbsI | GAAGAC | 2 cut(s) | 239, 443 |
| BccI | CCATC | 2 cut(s) | 122, 137 |
| BceAI | ACGGC | 1 cut(s) | 726 |
| BciT130I | CCWGG | 1 cut(s) | 589 |
| BclI | TGATCA | 2 cut(s) | 531, 784 |
| BcoDI | GTCTC | 1 cut(s) | 93 |
| BfaI | CTAG | 2 cut(s) | 204, 473 |
| BfrI | CTTAAG | 1 cut(s) | 260 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 92 |
| BisI | GCNGC | 1 cut(s) | 557 |
| BlpI | GCTNAGC | 1 cut(s) | 552 |
| BlsI | GCNGC | 1 cut(s) | 558 |
| Bme1390I | CCNGG | 1 cut(s) | 589 |
| Bme18I | GGWCC | 1 cut(s) | 146 |
| BmgBI | CACGTC | 1 cut(s) | 389 |
| BmgT120I | GGNCC | 3 cut(s) | 146, 739, 749 |
| BmrFI | CCNGG | 1 cut(s) | 589 |
| BmsI | GCATC | 1 cut(s) | 244 |
| BpiI | GAAGAC | 2 cut(s) | 239, 443 |
| BpmI | CTGGAG | 1 cut(s) | 512 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 552 |
| BpuEI | CTTGAG | 1 cut(s) | 71 |
| BsaAI | YACGTR | 2 cut(s) | 692, 710 |
| BsaHI | GRCGYC | 1 cut(s) | 236 |
| BsaJI | CCNNGG | 1 cut(s) | 742 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 64, 214, 315 |
| Bse21I | CCTNAGG | 1 cut(s) | 615 |
| Bse3DI | GCAATG | 1 cut(s) | 105 |
| BseBI | CCWGG | 1 cut(s) | 589 |
| BseDI | CCNNGG | 1 cut(s) | 742 |
| BseGI | GGATG | 3 cut(s) | 259, 515, 677 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 64, 214, 315 |
| BseMI | GCAATG | 1 cut(s) | 105 |
| BseMII | CTCAG | 4 cut(s) | 12, 54, 543, 606 |
| BseYI | CCCAGC | 1 cut(s) | 213 |
| BshFI | GGCC | 3 cut(s) | 592, 741, 751 |
| BslFI | GGGAC | 2 cut(s) | 279, 732 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 64, 214, 315 |
| BsmAI | GTCTC | 1 cut(s) | 93 |
| BsmFI | GGGAC | 2 cut(s) | 279, 732 |
| BsnI | GGCC | 3 cut(s) | 592, 741, 751 |
| Bsp143I | GATC | 5 cut(s) | 199, 429, 531, 679, 784 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 552 |
| BspACI | CCGC | 2 cut(s) | 328, 556 |
| BspANI | GGCC | 3 cut(s) | 592, 741, 751 |
| BspCNI | CTCAG | 4 cut(s) | 13, 53, 544, 607 |
| BspHI | TCATGA | 2 cut(s) | 283, 730 |
| BspPI | GGATC | 3 cut(s) | 194, 424, 674 |
| BspTI | CTTAAG | 1 cut(s) | 260 |
| BsrBI | CCGCTC | 1 cut(s) | 556 |
| BsrDI | GCAATG | 1 cut(s) | 105 |
| BssECI | CCNNGG | 1 cut(s) | 742 |
| BssMI | GATC | 5 cut(s) | 199, 429, 531, 679, 784 |
| BssNI | GRCGYC | 1 cut(s) | 236 |
| Bst2UI | CCWGG | 1 cut(s) | 589 |
| Bst4CI | ACNGT | 4 cut(s) | 150, 249, 310, 641 |
| BstACI | GRCGYC | 1 cut(s) | 236 |
| BstAFI | CTTAAG | 1 cut(s) | 260 |
| BstBAI | YACGTR | 2 cut(s) | 692, 710 |
| BstC8I | GCNNGC | 1 cut(s) | 332 |
| BstDEI | CTNAG | 4 cut(s) | 21, 40, 552, 615 |
| BstDSI | CCRYGG | 1 cut(s) | 742 |
| BstF5I | GGATG | 3 cut(s) | 259, 515, 677 |
| BstHHI | GCGC | 1 cut(s) | 378 |
| BstKTI | GATC | 5 cut(s) | 202, 432, 534, 682, 787 |
| BstMAI | GTCTC | 1 cut(s) | 93 |
| BstMBI | GATC | 5 cut(s) | 199, 429, 531, 679, 784 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 92 |
| BstNI | CCWGG | 1 cut(s) | 589 |
| BstSCI | CCNGG | 1 cut(s) | 587 |
| BstV2I | GAAGAC | 2 cut(s) | 239, 443 |
| Bsu36I | CCTNAGG | 1 cut(s) | 615 |
| BsuRI | GGCC | 3 cut(s) | 592, 741, 751 |
| BtgI | CCRYGG | 1 cut(s) | 742 |
| BtrI | CACGTC | 1 cut(s) | 389 |
| BtsCI | GGATG | 3 cut(s) | 259, 515, 677 |
| BtsIMutI | CAGTG | 2 cut(s) | 126, 320 |
| Cac8I | GCNNGC | 1 cut(s) | 332 |
| CciI | TCATGA | 2 cut(s) | 283, 730 |
| CfoI | GCGC | 1 cut(s) | 378 |
| Cfr13I | GGNCC | 3 cut(s) | 146, 739, 749 |
| CseI | GACGC | 1 cut(s) | 244 |
| Csp6I | GTAC | 1 cut(s) | 55 |
| CviAII | CATG | 3 cut(s) | 284, 722, 731 |
| CviQI | GTAC | 1 cut(s) | 55 |
| DdeI | CTNAG | 4 cut(s) | 21, 40, 552, 615 |
| DpnI | GATC | 5 cut(s) | 201, 431, 533, 681, 786 |
| DpnII | GATC | 5 cut(s) | 199, 429, 531, 679, 784 |
| DraIII | CACNNNGTG | 1 cut(s) | 710 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 726 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 726 |
| Eco147I | AGGCCT | 1 cut(s) | 592 |
| Eco32I | GATATC | 1 cut(s) | 502 |
| Eco47I | GGWCC | 1 cut(s) | 146 |
| Eco57I | CTGAAG | 2 cut(s) | 209, 444 |
| Eco72I | CACGTG | 2 cut(s) | 692, 710 |
| Eco81I | CCTNAGG | 1 cut(s) | 615 |
| EcoO109I | RGGNCCY | 1 cut(s) | 749 |
| EcoRII | CCWGG | 1 cut(s) | 587 |
| EcoRV | GATATC | 1 cut(s) | 502 |
| FaeI | CATG | 3 cut(s) | 287, 725, 734 |
| FaqI | GGGAC | 2 cut(s) | 279, 732 |
| FatI | CATG | 3 cut(s) | 283, 721, 730 |
| FbaI | TGATCA | 2 cut(s) | 531, 784 |
| Fnu4HI | GCNGC | 1 cut(s) | 557 |
| FokI | GGATG | 3 cut(s) | 266, 502, 684 |
| Fsp4HI | GCNGC | 1 cut(s) | 557 |
| FspBI | CTAG | 2 cut(s) | 204, 473 |
| GlaI | GCGC | 1 cut(s) | 377 |
| GluI | GCNGC | 1 cut(s) | 557 |
| GsaI | CCCAGC | 1 cut(s) | 217 |
| GsuI | CTGGAG | 1 cut(s) | 512 |
| HaeIII | GGCC | 3 cut(s) | 592, 741, 751 |
| HgaI | GACGC | 1 cut(s) | 244 |
| HhaI | GCGC | 1 cut(s) | 378 |
| Hin1I | GRCGYC | 1 cut(s) | 236 |
| Hin1II | CATG | 3 cut(s) | 287, 725, 734 |
| Hin6I | GCGC | 1 cut(s) | 376 |
| HinP1I | GCGC | 1 cut(s) | 376 |
| HinfI | GANTC | 3 cut(s) | 38, 439, 510 |
| HphI | GGTGA | 1 cut(s) | 172 |
| Hpy188I | TCNGA | 2 cut(s) | 43, 154 |
| Hpy188III | TCNNGA | 4 cut(s) | 284, 433, 614, 731 |
| HpyAV | CCTTC | 3 cut(s) | 233, 529, 782 |
| HpyCH4III | ACNGT | 4 cut(s) | 150, 249, 310, 641 |
| HpyCH4IV | ACGT | 4 cut(s) | 268, 388, 691, 709 |
| HpyCH4V | TGCA | 4 cut(s) | 544, 659, 704, 797 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 92 |
| HpyF3I | CTNAG | 4 cut(s) | 21, 40, 552, 615 |
| HpySE526I | ACGT | 4 cut(s) | 268, 388, 691, 709 |
| Hsp92I | GRCGYC | 1 cut(s) | 236 |
| Hsp92II | CATG | 3 cut(s) | 287, 725, 734 |
| HspAI | GCGC | 1 cut(s) | 376 |
| Ksp22I | TGATCA | 2 cut(s) | 531, 784 |
| Kzo9I | GATC | 5 cut(s) | 199, 429, 531, 679, 784 |
| LmnI | GCTCC | 1 cut(s) | 300 |
| LweI | GCATC | 1 cut(s) | 244 |
| MaeI | CTAG | 2 cut(s) | 204, 473 |
| MaeII | ACGT | 4 cut(s) | 268, 388, 691, 709 |
| MalI | GATC | 5 cut(s) | 201, 431, 533, 681, 786 |
| MbiI | CCGCTC | 1 cut(s) | 556 |
| MboI | GATC | 5 cut(s) | 199, 429, 531, 679, 784 |
| MboII | GAAGA | 3 cut(s) | 244, 431, 448 |
| MluCI | AATT | 4 cut(s) | 302, 394, 609, 622 |
| MlyI | GAGTC | 2 cut(s) | 32, 433 |
| MmeI | TCCRAC | 1 cut(s) | 577 |
| MnlI | CCTC | 5 cut(s) | 559, 610, 662, 740, 762 |
| MroXI | GAANNNNTTC | 1 cut(s) | 222 |
| MseI | TTAA | 5 cut(s) | 176, 185, 261, 575, 621 |
| MspCI | CTTAAG | 1 cut(s) | 260 |
| MspR9I | CCNGG | 1 cut(s) | 589 |
| MvaI | CCWGG | 1 cut(s) | 589 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 92 |
| NdeII | GATC | 5 cut(s) | 199, 429, 531, 679, 784 |
| NlaIII | CATG | 3 cut(s) | 287, 725, 734 |
| PagI | TCATGA | 2 cut(s) | 283, 730 |
| PceI | AGGCCT | 1 cut(s) | 592 |
| PdmI | GAANNNNTTC | 1 cut(s) | 222 |
| PfeI | GAWTC | 1 cut(s) | 510 |
| PkrI | GCNGC | 1 cut(s) | 558 |
| PleI | GAGTC | 2 cut(s) | 32, 433 |
| PmaCI | CACGTG | 2 cut(s) | 692, 710 |
| PmlI | CACGTG | 2 cut(s) | 692, 710 |
| PpsI | GAGTC | 2 cut(s) | 32, 433 |
| Ppu21I | YACGTR | 2 cut(s) | 692, 710 |
| Psp6I | CCWGG | 1 cut(s) | 587 |
| PspCI | CACGTG | 2 cut(s) | 692, 710 |
| PspFI | CCCAGC | 1 cut(s) | 213 |
| PspGI | CCWGG | 1 cut(s) | 587 |
| PspPI | GGNCC | 3 cut(s) | 146, 739, 749 |
| RsaI | GTAC | 1 cut(s) | 56 |
| RsaNI | GTAC | 1 cut(s) | 55 |
| SaqAI | TTAA | 5 cut(s) | 176, 185, 261, 575, 621 |
| SatI | GCNGC | 1 cut(s) | 557 |
| Sau3AI | GATC | 5 cut(s) | 199, 429, 531, 679, 784 |
| Sau96I | GGNCC | 3 cut(s) | 146, 739, 749 |
| SchI | GAGTC | 2 cut(s) | 32, 433 |
| ScrFI | CCNGG | 1 cut(s) | 589 |
| SfaNI | GCATC | 1 cut(s) | 244 |
| SinI | GGWCC | 1 cut(s) | 146 |
| SmlI | CTYRAG | 2 cut(s) | 50, 260 |
| SmoI | CTYRAG | 2 cut(s) | 50, 260 |
| Sse9I | AATT | 4 cut(s) | 302, 394, 609, 622 |
| SseBI | AGGCCT | 1 cut(s) | 592 |
| SsiI | CCGC | 2 cut(s) | 328, 556 |
| SspI | AATATT | 1 cut(s) | 180 |
| SspMI | CTAG | 2 cut(s) | 204, 473 |
| StuI | AGGCCT | 1 cut(s) | 592 |
| StyD4I | CCNGG | 1 cut(s) | 587 |
| TaaI | ACNGT | 4 cut(s) | 150, 249, 310, 641 |
| TaiI | ACGT | 4 cut(s) | 271, 391, 694, 712 |
| TaqI | TCGA | 1 cut(s) | 16 |
| TasI | AATT | 4 cut(s) | 302, 394, 609, 622 |
| TauI | GCSGC | 1 cut(s) | 559 |
| TfiI | GAWTC | 1 cut(s) | 510 |
| Tru1I | TTAA | 5 cut(s) | 176, 185, 261, 575, 621 |
| Tru9I | TTAA | 5 cut(s) | 176, 185, 261, 575, 621 |
| TscAI | CASTG | 2 cut(s) | 133, 320 |
| TspDTI | ATGAA | 3 cut(s) | 272, 336, 650 |
| TspGWI | ACGGA | 1 cut(s) | 60 |
| TspRI | CASTG | 2 cut(s) | 133, 320 |
| Vha464I | CTTAAG | 1 cut(s) | 260 |
| VpaK11BI | GGWCC | 1 cut(s) | 146 |
| XapI | RAATTY | 2 cut(s) | 394, 609 |
| XmnI | GAANNNNTTC | 1 cut(s) | 222 |
| XspI | CTAG | 2 cut(s) | 204, 473 |