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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 605 |
| AciI | CCGC | 1 cut(s) | 762 |
| AclWI | GGATC | 2 cut(s) | 2, 518 |
| AcsI | RAATTY | 2 cut(s) | 23, 453 |
| AcuI | CTGAAG | 1 cut(s) | 288 |
| AcvI | CACGTG | 2 cut(s) | 536, 554 |
| AdeI | CACNNNGTG | 1 cut(s) | 554 |
| AfaI | GTAC | 2 cut(s) | 301, 309 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 605, 736 |
| AflIII | ACRYGT | 2 cut(s) | 213, 565 |
| AgsI | TTSAA | 4 cut(s) | 37, 205, 367, 421 |
| AluBI | AGCT | 3 cut(s) | 373, 695, 722 |
| AluI | AGCT | 3 cut(s) | 373, 695, 722 |
| Alw21I | GWGCWC | 1 cut(s) | 697 |
| AlwI | GGATC | 2 cut(s) | 2, 518 |
| AoxI | GGCC | 3 cut(s) | 582, 591, 627 |
| ApoI | RAATTY | 2 cut(s) | 23, 453 |
| AspLEI | GCGC | 1 cut(s) | 611 |
| AspS9I | GGNCC | 4 cut(s) | 146, 582, 592, 628 |
| AsuC2I | CCSGG | 1 cut(s) | 665 |
| AsuHPI | GGTGA | 2 cut(s) | 497, 715 |
| AvaII | GGWCC | 1 cut(s) | 146 |
| AxyI | CCTNAGG | 2 cut(s) | 383, 459 |
| BanII | GRGCYC | 1 cut(s) | 697 |
| BbrPI | CACGTG | 2 cut(s) | 536, 554 |
| Bbv12I | GWGCWC | 1 cut(s) | 697 |
| BccI | CCATC | 4 cut(s) | 122, 134, 137, 610 |
| BceAI | ACGGC | 1 cut(s) | 569 |
| BclI | TGATCA | 1 cut(s) | 375 |
| BcnI | CCSGG | 1 cut(s) | 665 |
| BfaI | CTAG | 3 cut(s) | 317, 632, 759 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 590 |
| BisI | GCNGC | 1 cut(s) | 763 |
| BlsI | GCNGC | 1 cut(s) | 764 |
| BmcAI | AGTACT | 1 cut(s) | 309 |
| Bme1390I | CCNGG | 1 cut(s) | 665 |
| Bme18I | GGWCC | 1 cut(s) | 146 |
| BmgT120I | GGNCC | 4 cut(s) | 146, 582, 592, 628 |
| BmrFI | CCNGG | 1 cut(s) | 665 |
| BmsI | GCATC | 1 cut(s) | 761 |
| BpmI | CTGGAG | 1 cut(s) | 356 |
| BpuEI | CTTGAG | 1 cut(s) | 209 |
| BpuMI | CCSGG | 1 cut(s) | 665 |
| BsaAI | YACGTR | 2 cut(s) | 536, 554 |
| BsaJI | CCNNGG | 1 cut(s) | 585 |
| BsaWI | WCCGGW | 2 cut(s) | 697, 736 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 605, 736 |
| Bse1I | ACTGG | 1 cut(s) | 325 |
| Bse21I | CCTNAGG | 2 cut(s) | 383, 459 |
| Bse3DI | GCAATG | 1 cut(s) | 565 |
| BseDI | CCNNGG | 1 cut(s) | 585 |
| BseGI | GGATG | 1 cut(s) | 752 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 605, 736 |
| BseMI | GCAATG | 1 cut(s) | 565 |
| BseMII | CTCAG | 3 cut(s) | 54, 387, 450 |
| BseNI | ACTGG | 1 cut(s) | 325 |
| BseRI | GAGGAG | 1 cut(s) | 212 |
| Bsh1285I | CGRYCG | 1 cut(s) | 741 |
| BshFI | GGCC | 3 cut(s) | 584, 593, 629 |
| BsiEI | CGRYCG | 1 cut(s) | 741 |
| BsiHKAI | GWGCWC | 1 cut(s) | 697 |
| BsiSI | CCGG | 3 cut(s) | 665, 698, 737 |
| BslFI | GGGAC | 2 cut(s) | 457, 728 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 605, 736 |
| BsmFI | GGGAC | 2 cut(s) | 457, 728 |
| BsnI | GGCC | 3 cut(s) | 584, 593, 629 |
| Bsp1286I | GDGCHC | 1 cut(s) | 697 |
| Bsp143I | GATC | 5 cut(s) | 7, 273, 375, 523, 716 |
| BspACI | CCGC | 1 cut(s) | 762 |
| BspANI | GGCC | 3 cut(s) | 584, 593, 629 |
| BspCNI | CTCAG | 3 cut(s) | 53, 388, 451 |
| BspPI | GGATC | 2 cut(s) | 2, 518 |
| BsrDI | GCAATG | 1 cut(s) | 565 |
| BsrI | ACTGG | 1 cut(s) | 325 |
| BssECI | CCNNGG | 1 cut(s) | 585 |
| BssMI | GATC | 5 cut(s) | 7, 273, 375, 523, 716 |
| Bst4CI | ACNGT | 2 cut(s) | 109, 150 |
| BstBAI | YACGTR | 2 cut(s) | 536, 554 |
| BstC8I | GCNNGC | 4 cut(s) | 176, 627, 693, 724 |
| BstDEI | CTNAG | 4 cut(s) | 40, 383, 396, 459 |
| BstDSI | CCRYGG | 1 cut(s) | 585 |
| BstF5I | GGATG | 1 cut(s) | 752 |
| BstHHI | GCGC | 1 cut(s) | 611 |
| BstKTI | GATC | 5 cut(s) | 10, 276, 378, 526, 719 |
| BstMBI | GATC | 5 cut(s) | 7, 273, 375, 523, 716 |
| BstMCI | CGRYCG | 1 cut(s) | 741 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 92, 590 |
| BstNSI | RCATGY | 3 cut(s) | 217, 521, 569 |
| BstSCI | CCNGG | 1 cut(s) | 663 |
| Bsu36I | CCTNAGG | 2 cut(s) | 383, 459 |
| BsuRI | GGCC | 3 cut(s) | 584, 593, 629 |
| BtgI | CCRYGG | 1 cut(s) | 585 |
| BtsCI | GGATG | 1 cut(s) | 752 |
| BtsIMutI | CAGTG | 1 cut(s) | 105 |
| Cac8I | GCNNGC | 4 cut(s) | 176, 627, 693, 724 |
| CfoI | GCGC | 1 cut(s) | 611 |
| Cfr13I | GGNCC | 4 cut(s) | 146, 582, 592, 628 |
| Csp6I | GTAC | 2 cut(s) | 300, 308 |
| CviAII | CATG | 4 cut(s) | 214, 518, 566, 640 |
| CviJI | RGCY | 9 cut(s) | 373, 395, 464, 584, 593, 629, 668, 695, 722 |
| CviKI_1 | RGCY | 9 cut(s) | 373, 395, 464, 584, 593, 629, 668, 695, 722 |
| CviQI | GTAC | 2 cut(s) | 300, 308 |
| DdeI | CTNAG | 4 cut(s) | 40, 383, 396, 459 |
| DpnI | GATC | 5 cut(s) | 9, 275, 377, 525, 718 |
| DpnII | GATC | 5 cut(s) | 7, 273, 375, 523, 716 |
| DraIII | CACNNNGTG | 1 cut(s) | 554 |
| Ecl136II | GAGCTC | 1 cut(s) | 695 |
| Eco24I | GRGCYC | 1 cut(s) | 697 |
| Eco47I | GGWCC | 1 cut(s) | 146 |
| Eco53kI | GAGCTC | 1 cut(s) | 695 |
| Eco57I | CTGAAG | 1 cut(s) | 288 |
| Eco72I | CACGTG | 2 cut(s) | 536, 554 |
| Eco81I | CCTNAGG | 2 cut(s) | 383, 459 |
| EcoICRI | GAGCTC | 1 cut(s) | 695 |
| EcoO109I | RGGNCCY | 1 cut(s) | 592 |
| EcoT38I | GRGCYC | 1 cut(s) | 697 |
| FaeI | CATG | 4 cut(s) | 217, 521, 569, 643 |
| FaqI | GGGAC | 2 cut(s) | 457, 728 |
| FatI | CATG | 4 cut(s) | 213, 517, 565, 639 |
| FbaI | TGATCA | 1 cut(s) | 375 |
| Fnu4HI | GCNGC | 1 cut(s) | 763 |
| FokI | GGATG | 1 cut(s) | 739 |
| FriOI | GRGCYC | 1 cut(s) | 697 |
| Fsp4HI | GCNGC | 1 cut(s) | 763 |
| FspBI | CTAG | 3 cut(s) | 317, 632, 759 |
| GlaI | GCGC | 1 cut(s) | 610 |
| GluI | GCNGC | 1 cut(s) | 763 |
| GsuI | CTGGAG | 1 cut(s) | 356 |
| HaeIII | GGCC | 3 cut(s) | 584, 593, 629 |
| HapII | CCGG | 3 cut(s) | 665, 698, 737 |
| HhaI | GCGC | 1 cut(s) | 611 |
| Hin1II | CATG | 4 cut(s) | 217, 521, 569, 643 |
| Hin6I | GCGC | 1 cut(s) | 609 |
| HinP1I | GCGC | 1 cut(s) | 609 |
| HinfI | GANTC | 4 cut(s) | 131, 283, 676, 767 |
| HpaII | CCGG | 3 cut(s) | 665, 698, 737 |
| HphI | GGTGA | 2 cut(s) | 497, 715 |
| Hpy188I | TCNGA | 3 cut(s) | 43, 73, 154 |
| Hpy188III | TCNNGA | 3 cut(s) | 458, 714, 771 |
| HpyAV | CCTTC | 2 cut(s) | 38, 243 |
| HpyCH4III | ACNGT | 2 cut(s) | 109, 150 |
| HpyCH4IV | ACGT | 2 cut(s) | 535, 553 |
| HpyCH4V | TGCA | 1 cut(s) | 548 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 92, 590 |
| HpyF3I | CTNAG | 4 cut(s) | 40, 383, 396, 459 |
| HpySE526I | ACGT | 2 cut(s) | 535, 553 |
| Hsp92II | CATG | 4 cut(s) | 217, 521, 569, 643 |
| HspAI | GCGC | 1 cut(s) | 609 |
| Ksp22I | TGATCA | 1 cut(s) | 375 |
| Kzo9I | GATC | 5 cut(s) | 7, 273, 375, 523, 716 |
| LmnI | GCTCC | 2 cut(s) | 700, 739 |
| LweI | GCATC | 1 cut(s) | 761 |
| MaeI | CTAG | 3 cut(s) | 317, 632, 759 |
| MaeII | ACGT | 2 cut(s) | 535, 553 |
| MaeIII | GTNAC | 2 cut(s) | 109, 216 |
| MalI | GATC | 5 cut(s) | 9, 275, 377, 525, 718 |
| MboI | GATC | 5 cut(s) | 7, 273, 375, 523, 716 |
| MhlI | GDGCHC | 1 cut(s) | 697 |
| MluCI | AATT | 5 cut(s) | 23, 48, 238, 453, 466 |
| MlyI | GAGTC | 3 cut(s) | 125, 277, 670 |
| MmeI | TCCRAC | 2 cut(s) | 35, 493 |
| MnlI | CCTC | 9 cut(s) | 233, 393, 403, 454, 583, 605, 737, 756, 766 |
| MspI | CCGG | 3 cut(s) | 665, 698, 737 |
| MspR9I | CCNGG | 1 cut(s) | 665 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 92, 590 |
| NciI | CCSGG | 1 cut(s) | 665 |
| NdeII | GATC | 5 cut(s) | 7, 273, 375, 523, 716 |
| NlaIII | CATG | 4 cut(s) | 217, 521, 569, 643 |
| NspI | RCATGY | 3 cut(s) | 217, 521, 569 |
| PciI | ACATGT | 2 cut(s) | 213, 565 |
| PfeI | GAWTC | 1 cut(s) | 767 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 605 |
| PkrI | GCNGC | 1 cut(s) | 764 |
| PleI | GAGTC | 3 cut(s) | 125, 277, 670 |
| PmaCI | CACGTG | 2 cut(s) | 536, 554 |
| PmlI | CACGTG | 2 cut(s) | 536, 554 |
| PpsI | GAGTC | 3 cut(s) | 125, 277, 670 |
| Ppu21I | YACGTR | 2 cut(s) | 536, 554 |
| PscI | ACATGT | 2 cut(s) | 213, 565 |
| Psp124BI | GAGCTC | 1 cut(s) | 697 |
| PspCI | CACGTG | 2 cut(s) | 536, 554 |
| PspPI | GGNCC | 4 cut(s) | 146, 582, 592, 628 |
| RsaI | GTAC | 2 cut(s) | 301, 309 |
| RsaNI | GTAC | 2 cut(s) | 300, 308 |
| SacI | GAGCTC | 1 cut(s) | 697 |
| SatI | GCNGC | 1 cut(s) | 763 |
| Sau3AI | GATC | 5 cut(s) | 7, 273, 375, 523, 716 |
| Sau96I | GGNCC | 4 cut(s) | 146, 582, 592, 628 |
| ScaI | AGTACT | 1 cut(s) | 309 |
| SchI | GAGTC | 3 cut(s) | 125, 277, 670 |
| ScrFI | CCNGG | 1 cut(s) | 665 |
| SduI | GDGCHC | 1 cut(s) | 697 |
| SfaNI | GCATC | 1 cut(s) | 761 |
| SfiI | GGCCNNNNNGGCC | 1 cut(s) | 590 |
| SinI | GGWCC | 1 cut(s) | 146 |
| SmlI | CTYRAG | 1 cut(s) | 224 |
| SmoI | CTYRAG | 1 cut(s) | 224 |
| Sse9I | AATT | 5 cut(s) | 23, 48, 238, 453, 466 |
| SsiI | CCGC | 1 cut(s) | 762 |
| SspMI | CTAG | 3 cut(s) | 317, 632, 759 |
| SstI | GAGCTC | 1 cut(s) | 697 |
| StyD4I | CCNGG | 1 cut(s) | 663 |
| TaaI | ACNGT | 2 cut(s) | 109, 150 |
| TaiI | ACGT | 2 cut(s) | 538, 556 |
| TaqI | TCGA | 3 cut(s) | 16, 129, 276 |
| TasI | AATT | 5 cut(s) | 23, 48, 238, 453, 466 |
| TatI | WGTACW | 1 cut(s) | 307 |
| TauI | GCSGC | 1 cut(s) | 765 |
| TfiI | GAWTC | 1 cut(s) | 767 |
| TscAI | CASTG | 1 cut(s) | 112 |
| TspDTI | ATGAA | 1 cut(s) | 180 |
| TspRI | CASTG | 1 cut(s) | 112 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 605 |
| VpaK11BI | GGWCC | 1 cut(s) | 146 |
| XapI | RAATTY | 2 cut(s) | 23, 453 |
| XceI | RCATGY | 3 cut(s) | 217, 521, 569 |
| XspI | CTAG | 3 cut(s) | 317, 632, 759 |
| ZrmI | AGTACT | 1 cut(s) | 309 |