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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 34 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 198 |
| AccII | CGCG | 1 cut(s) | 32 |
| AciI | CCGC | 2 cut(s) | 5, 32 |
| AclWI | GGATC | 1 cut(s) | 424 |
| AcsI | RAATTY | 1 cut(s) | 224 |
| AcuI | CTGAAG | 1 cut(s) | 39 |
| AfaI | GTAC | 1 cut(s) | 280 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 198 |
| AgsI | TTSAA | 3 cut(s) | 289, 315, 350 |
| AluBI | AGCT | 5 cut(s) | 164, 320, 337, 363, 439 |
| AluI | AGCT | 5 cut(s) | 164, 320, 337, 363, 439 |
| AlwI | GGATC | 1 cut(s) | 424 |
| AoxI | GGCC | 1 cut(s) | 396 |
| ApeKI | GCWGC | 3 cut(s) | 155, 158, 161 |
| ApoI | RAATTY | 1 cut(s) | 224 |
| AspLEI | GCGC | 1 cut(s) | 503 |
| AspS9I | GGNCC | 2 cut(s) | 230, 396 |
| AvaII | GGWCC | 1 cut(s) | 230 |
| BanI | GGYRCC | 1 cut(s) | 34 |
| BbvI | GCAGC | 3 cut(s) | 142, 170, 173 |
| BccI | CCATC | 2 cut(s) | 241, 491 |
| BfaI | CTAG | 3 cut(s) | 360, 440, 467 |
| BfmI | CTRYAG | 1 cut(s) | 156 |
| BisI | GCNGC | 3 cut(s) | 156, 159, 162 |
| BlsI | GCNGC | 3 cut(s) | 157, 160, 163 |
| Bme18I | GGWCC | 1 cut(s) | 230 |
| BmgT120I | GGNCC | 2 cut(s) | 230, 396 |
| BmiI | GGNNCC | 1 cut(s) | 36 |
| BpuEI | CTTGAG | 1 cut(s) | 419 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 198 |
| Bse118I | RCCGGY | 1 cut(s) | 146 |
| Bse1I | ACTGG | 1 cut(s) | 77 |
| BseGI | GGATG | 1 cut(s) | 233 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 198 |
| BseNI | ACTGG | 1 cut(s) | 77 |
| BseRI | GAGGAG | 1 cut(s) | 23 |
| BseXI | GCAGC | 3 cut(s) | 142, 170, 173 |
| Bsh1236I | CGCG | 1 cut(s) | 32 |
| BshFI | GGCC | 1 cut(s) | 398 |
| BshNI | GGYRCC | 1 cut(s) | 34 |
| BsiSI | CCGG | 1 cut(s) | 147 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 198 |
| BsnI | GGCC | 1 cut(s) | 398 |
| Bsp143I | GATC | 1 cut(s) | 429 |
| BspACI | CCGC | 2 cut(s) | 5, 32 |
| BspANI | GGCC | 1 cut(s) | 398 |
| BspFNI | CGCG | 1 cut(s) | 32 |
| BspLI | GGNNCC | 1 cut(s) | 36 |
| BspMAI | CTGCAG | 1 cut(s) | 160 |
| BspPI | GGATC | 1 cut(s) | 424 |
| BspQI | GCTCTTC | 1 cut(s) | 400 |
| BspT107I | GGYRCC | 1 cut(s) | 34 |
| BsrFI | RCCGGY | 1 cut(s) | 146 |
| BsrI | ACTGG | 1 cut(s) | 77 |
| BssAI | RCCGGY | 1 cut(s) | 146 |
| BssMI | GATC | 1 cut(s) | 429 |
| Bst4CI | ACNGT | 3 cut(s) | 299, 371, 507 |
| Bst6I | CTCTTC | 1 cut(s) | 400 |
| BstDEI | CTNAG | 2 cut(s) | 207, 426 |
| BstF5I | GGATG | 1 cut(s) | 233 |
| BstFNI | CGCG | 1 cut(s) | 32 |
| BstHHI | GCGC | 1 cut(s) | 503 |
| BstKTI | GATC | 1 cut(s) | 432 |
| BstMBI | GATC | 1 cut(s) | 429 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 22, 152, 161, 170, 179, 188 |
| BstSFI | CTRYAG | 1 cut(s) | 156 |
| BstUI | CGCG | 1 cut(s) | 32 |
| BstV1I | GCAGC | 3 cut(s) | 142, 170, 173 |
| BstX2I | RGATCY | 1 cut(s) | 429 |
| BstYI | RGATCY | 1 cut(s) | 429 |
| BsuRI | GGCC | 1 cut(s) | 398 |
| BtsCI | GGATG | 1 cut(s) | 233 |
| BtsI | GCAGTG | 1 cut(s) | 417 |
| BtsIMutI | CAGTG | 2 cut(s) | 304, 417 |
| CfoI | GCGC | 1 cut(s) | 503 |
| Cfr10I | RCCGGY | 1 cut(s) | 146 |
| Cfr13I | GGNCC | 2 cut(s) | 230, 396 |
| CseI | GACGC | 1 cut(s) | 38 |
| Csp6I | GTAC | 1 cut(s) | 279 |
| CviAII | CATG | 3 cut(s) | 169, 251, 400 |
| CviQI | GTAC | 1 cut(s) | 279 |
| DdeI | CTNAG | 2 cut(s) | 207, 426 |
| DpnI | GATC | 1 cut(s) | 431 |
| DpnII | GATC | 1 cut(s) | 429 |
| Eam1104I | CTCTTC | 1 cut(s) | 400 |
| EarI | CTCTTC | 1 cut(s) | 400 |
| EciI | GGCGGA | 1 cut(s) | 20 |
| Eco32I | GATATC | 1 cut(s) | 204 |
| Eco47I | GGWCC | 1 cut(s) | 230 |
| Eco57I | CTGAAG | 1 cut(s) | 39 |
| EcoRV | GATATC | 1 cut(s) | 204 |
| FaeI | CATG | 3 cut(s) | 172, 254, 403 |
| FaiI | YATR | 7 cut(s) | 170, 219, 252, 401, 422, 527, 529 |
| FatI | CATG | 3 cut(s) | 168, 250, 399 |
| Fnu4HI | GCNGC | 3 cut(s) | 156, 159, 162 |
| FokI | GGATG | 1 cut(s) | 220 |
| Fsp4HI | GCNGC | 3 cut(s) | 156, 159, 162 |
| FspBI | CTAG | 3 cut(s) | 360, 440, 467 |
| GlaI | GCGC | 1 cut(s) | 502 |
| GluI | GCNGC | 3 cut(s) | 156, 159, 162 |
| HaeIII | GGCC | 1 cut(s) | 398 |
| HapII | CCGG | 1 cut(s) | 147 |
| HgaI | GACGC | 1 cut(s) | 38 |
| HhaI | GCGC | 1 cut(s) | 503 |
| Hin1II | CATG | 3 cut(s) | 172, 254, 403 |
| Hin6I | GCGC | 1 cut(s) | 501 |
| HinP1I | GCGC | 1 cut(s) | 501 |
| HincII | GTYRAC | 1 cut(s) | 374 |
| HindII | GTYRAC | 1 cut(s) | 374 |
| HindIII | AAGCTT | 1 cut(s) | 335 |
| HinfI | GANTC | 2 cut(s) | 459, 470 |
| HpaII | CCGG | 1 cut(s) | 147 |
| Hpy166II | GTNNAC | 2 cut(s) | 245, 374 |
| Hpy188III | TCNNGA | 4 cut(s) | 68, 262, 315, 467 |
| Hpy8I | GTNNAC | 2 cut(s) | 245, 374 |
| HpyAV | CCTTC | 2 cut(s) | 34, 441 |
| HpyCH4III | ACNGT | 3 cut(s) | 299, 371, 507 |
| HpyCH4IV | ACGT | 1 cut(s) | 376 |
| HpyCH4V | TGCA | 2 cut(s) | 158, 476 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 22, 152, 161, 170, 179, 188 |
| HpyF3I | CTNAG | 2 cut(s) | 207, 426 |
| HpySE526I | ACGT | 1 cut(s) | 376 |
| Hsp92II | CATG | 3 cut(s) | 172, 254, 403 |
| HspAI | GCGC | 1 cut(s) | 501 |
| Kzo9I | GATC | 1 cut(s) | 429 |
| LguI | GCTCTTC | 1 cut(s) | 400 |
| LmnI | GCTCC | 1 cut(s) | 187 |
| LpnPI | CCDG | 8 cut(s) | 30, 58, 81, 89, 160, 225, 261, 507 |
| Lsp1109I | GCAGC | 3 cut(s) | 142, 170, 173 |
| MaeI | CTAG | 3 cut(s) | 360, 440, 467 |
| MaeII | ACGT | 1 cut(s) | 376 |
| MaeIII | GTNAC | 2 cut(s) | 328, 355 |
| MalI | GATC | 1 cut(s) | 431 |
| MboI | GATC | 1 cut(s) | 429 |
| MboII | GAAGA | 2 cut(s) | 417, 510 |
| MfeI | CAATTG | 1 cut(s) | 48 |
| MflI | RGATCY | 1 cut(s) | 429 |
| MluCI | AATT | 3 cut(s) | 48, 224, 340 |
| MlyI | GAGTC | 1 cut(s) | 453 |
| MnlI | CCTC | 3 cut(s) | 75, 443, 477 |
| MseI | TTAA | 1 cut(s) | 339 |
| MspI | CCGG | 1 cut(s) | 147 |
| MunI | CAATTG | 1 cut(s) | 48 |
| MvnI | CGCG | 1 cut(s) | 32 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 22, 152, 161, 170, 179, 188 |
| NdeII | GATC | 1 cut(s) | 429 |
| NlaIII | CATG | 3 cut(s) | 172, 254, 403 |
| NlaIV | GGNNCC | 1 cut(s) | 36 |
| NmuCI | GTSAC | 2 cut(s) | 328, 355 |
| PciSI | GCTCTTC | 1 cut(s) | 400 |
| PfeI | GAWTC | 1 cut(s) | 470 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 198 |
| PkrI | GCNGC | 3 cut(s) | 157, 160, 163 |
| PleI | GAGTC | 1 cut(s) | 453 |
| PpsI | GAGTC | 1 cut(s) | 453 |
| PspN4I | GGNNCC | 1 cut(s) | 36 |
| PspPI | GGNCC | 2 cut(s) | 230, 396 |
| PstI | CTGCAG | 1 cut(s) | 160 |
| PsuI | RGATCY | 1 cut(s) | 429 |
| RsaI | GTAC | 1 cut(s) | 280 |
| RsaNI | GTAC | 1 cut(s) | 279 |
| SapI | GCTCTTC | 1 cut(s) | 400 |
| SaqAI | TTAA | 1 cut(s) | 339 |
| SatI | GCNGC | 3 cut(s) | 156, 159, 162 |
| Sau3AI | GATC | 1 cut(s) | 429 |
| Sau96I | GGNCC | 2 cut(s) | 230, 396 |
| SchI | GAGTC | 1 cut(s) | 453 |
| SetI | ASST | 8 cut(s) | 166, 310, 322, 327, 339, 365, 379, 441 |
| SfcI | CTRYAG | 1 cut(s) | 156 |
| SinI | GGWCC | 1 cut(s) | 230 |
| SmlI | CTYRAG | 1 cut(s) | 434 |
| SmoI | CTYRAG | 1 cut(s) | 434 |
| Sse9I | AATT | 3 cut(s) | 48, 224, 340 |
| SsiI | CCGC | 2 cut(s) | 5, 32 |
| SspI | AATATT | 1 cut(s) | 493 |
| SspMI | CTAG | 3 cut(s) | 360, 440, 467 |
| TaaI | ACNGT | 3 cut(s) | 299, 371, 507 |
| TaiI | ACGT | 1 cut(s) | 379 |
| TasI | AATT | 3 cut(s) | 48, 224, 340 |
| TfiI | GAWTC | 1 cut(s) | 470 |
| Tru1I | TTAA | 1 cut(s) | 339 |
| Tru9I | TTAA | 1 cut(s) | 339 |
| TscAI | CASTG | 2 cut(s) | 304, 417 |
| TseFI | GTSAC | 2 cut(s) | 328, 355 |
| TseI | GCWGC | 3 cut(s) | 155, 158, 161 |
| Tsp45I | GTSAC | 2 cut(s) | 328, 355 |
| TspDTI | ATGAA | 1 cut(s) | 118 |
| TspRI | CASTG | 2 cut(s) | 304, 417 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 198 |
| VpaK11BI | GGWCC | 1 cut(s) | 230 |
| XapI | RAATTY | 1 cut(s) | 224 |
| XbaI | TCTAGA | 1 cut(s) | 466 |
| XspI | CTAG | 3 cut(s) | 360, 440, 467 |