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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccIII | TCCGGA | 1 cut(s) | 432 |
| AciI | CCGC | 1 cut(s) | 84 |
| AclWI | GGATC | 3 cut(s) | 2, 194, 424 |
| AcsI | RAATTY | 2 cut(s) | 23, 513 |
| AcuI | CTGAAG | 1 cut(s) | 209 |
| AfaI | GTAC | 2 cut(s) | 56, 221 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 64, 214, 315 |
| AflII | CTTAAG | 1 cut(s) | 260 |
| AflIII | ACRYGT | 1 cut(s) | 369 |
| AgsI | TTSAA | 2 cut(s) | 232, 361 |
| AjiI | CACGTC | 1 cut(s) | 578 |
| AlwI | GGATC | 3 cut(s) | 2, 194, 424 |
| Aor13HI | TCCGGA | 1 cut(s) | 432 |
| AoxI | GGCC | 2 cut(s) | 643, 652 |
| ApoI | RAATTY | 2 cut(s) | 23, 513 |
| AspS9I | GGNCC | 1 cut(s) | 653 |
| AsuHPI | GGTGA | 1 cut(s) | 550 |
| BanII | GRGCYC | 1 cut(s) | 498 |
| BbsI | GAAGAC | 1 cut(s) | 443 |
| BccI | CCATC | 2 cut(s) | 122, 137 |
| BfaI | CTAG | 4 cut(s) | 204, 299, 473, 491 |
| BfrI | CTTAAG | 1 cut(s) | 260 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 92, 651 |
| BmgBI | CACGTC | 1 cut(s) | 578 |
| BmgT120I | GGNCC | 1 cut(s) | 653 |
| BmrI | ACTGGG | 1 cut(s) | 49 |
| BmsI | GCATC | 1 cut(s) | 244 |
| BmuI | ACTGGG | 1 cut(s) | 49 |
| BpiI | GAAGAC | 1 cut(s) | 443 |
| BsaJI | CCNNGG | 3 cut(s) | 314, 519, 646 |
| BsaWI | WCCGGW | 1 cut(s) | 432 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 64, 214, 315 |
| Bse1I | ACTGG | 2 cut(s) | 44, 481 |
| BseAI | TCCGGA | 1 cut(s) | 432 |
| BseDI | CCNNGG | 3 cut(s) | 314, 519, 646 |
| BseGI | GGATG | 2 cut(s) | 259, 272 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 64, 214, 315 |
| BseNI | ACTGG | 2 cut(s) | 44, 481 |
| BseYI | CCCAGC | 1 cut(s) | 213 |
| BshFI | GGCC | 2 cut(s) | 645, 654 |
| BsiSI | CCGG | 1 cut(s) | 433 |
| BslFI | GGGAC | 2 cut(s) | 517, 636 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 64, 214, 315 |
| BsmFI | GGGAC | 2 cut(s) | 517, 636 |
| BsnI | GGCC | 2 cut(s) | 645, 654 |
| Bsp1286I | GDGCHC | 1 cut(s) | 498 |
| Bsp13I | TCCGGA | 1 cut(s) | 432 |
| Bsp143I | GATC | 4 cut(s) | 7, 199, 429, 583 |
| Bsp19I | CCATGG | 2 cut(s) | 314, 646 |
| BspACI | CCGC | 1 cut(s) | 84 |
| BspANI | GGCC | 2 cut(s) | 645, 654 |
| BspEI | TCCGGA | 1 cut(s) | 432 |
| BspHI | TCATGA | 1 cut(s) | 283 |
| BspPI | GGATC | 3 cut(s) | 2, 194, 424 |
| BspTI | CTTAAG | 1 cut(s) | 260 |
| BsrI | ACTGG | 2 cut(s) | 44, 481 |
| BssECI | CCNNGG | 3 cut(s) | 314, 519, 646 |
| BssMI | GATC | 4 cut(s) | 7, 199, 429, 583 |
| BssT1I | CCWWGG | 2 cut(s) | 314, 646 |
| Bst4CI | ACNGT | 3 cut(s) | 150, 249, 310 |
| BstAFI | CTTAAG | 1 cut(s) | 260 |
| BstDEI | CTNAG | 1 cut(s) | 185 |
| BstDSI | CCRYGG | 2 cut(s) | 314, 646 |
| BstF5I | GGATG | 2 cut(s) | 259, 272 |
| BstKTI | GATC | 4 cut(s) | 10, 202, 432, 586 |
| BstMBI | GATC | 4 cut(s) | 7, 199, 429, 583 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 92, 651 |
| BstNSI | RCATGY | 1 cut(s) | 373 |
| BstV2I | GAAGAC | 1 cut(s) | 443 |
| BsuRI | GGCC | 2 cut(s) | 645, 654 |
| BtgI | CCRYGG | 2 cut(s) | 314, 646 |
| BtrI | CACGTC | 1 cut(s) | 578 |
| BtsCI | GGATG | 2 cut(s) | 259, 272 |
| BtsI | GCAGTG | 1 cut(s) | 105 |
| BtsIMutI | CAGTG | 1 cut(s) | 105 |
| CciI | TCATGA | 1 cut(s) | 283 |
| Cfr13I | GGNCC | 1 cut(s) | 653 |
| Csp6I | GTAC | 2 cut(s) | 55, 220 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 382, 417 |
| CviAII | CATG | 7 cut(s) | 284, 315, 370, 596, 614, 626, 647 |
| CviJI | RGCY | 7 cut(s) | 5, 207, 490, 496, 524, 645, 654 |
| CviKI_1 | RGCY | 7 cut(s) | 5, 207, 490, 496, 524, 645, 654 |
| CviQI | GTAC | 2 cut(s) | 55, 220 |
| DdeI | CTNAG | 1 cut(s) | 185 |
| DpnI | GATC | 4 cut(s) | 9, 201, 431, 585 |
| DpnII | GATC | 4 cut(s) | 7, 199, 429, 583 |
| Eco130I | CCWWGG | 2 cut(s) | 314, 646 |
| Eco24I | GRGCYC | 1 cut(s) | 498 |
| Eco57I | CTGAAG | 1 cut(s) | 209 |
| EcoO109I | RGGNCCY | 1 cut(s) | 653 |
| EcoT14I | CCWWGG | 2 cut(s) | 314, 646 |
| EcoT38I | GRGCYC | 1 cut(s) | 498 |
| ErhI | CCWWGG | 2 cut(s) | 314, 646 |
| FaeI | CATG | 7 cut(s) | 287, 318, 373, 599, 617, 629, 650 |
| FaqI | GGGAC | 2 cut(s) | 517, 636 |
| FatI | CATG | 7 cut(s) | 283, 314, 369, 595, 613, 625, 646 |
| FokI | GGATG | 2 cut(s) | 266, 279 |
| FriOI | GRGCYC | 1 cut(s) | 498 |
| FspBI | CTAG | 4 cut(s) | 204, 299, 473, 491 |
| GsaI | CCCAGC | 1 cut(s) | 217 |
| HaeIII | GGCC | 2 cut(s) | 645, 654 |
| HapII | CCGG | 1 cut(s) | 433 |
| Hin1II | CATG | 7 cut(s) | 287, 318, 373, 599, 617, 629, 650 |
| HinfI | GANTC | 1 cut(s) | 439 |
| HpaII | CCGG | 1 cut(s) | 433 |
| HphI | GGTGA | 1 cut(s) | 550 |
| Hpy188I | TCNGA | 2 cut(s) | 73, 520 |
| Hpy188III | TCNNGA | 2 cut(s) | 284, 433 |
| HpyAV | CCTTC | 2 cut(s) | 38, 233 |
| HpyCH4III | ACNGT | 3 cut(s) | 150, 249, 310 |
| HpyCH4IV | ACGT | 1 cut(s) | 577 |
| HpyCH4V | TGCA | 1 cut(s) | 608 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 92, 651 |
| HpyF3I | CTNAG | 1 cut(s) | 185 |
| HpySE526I | ACGT | 1 cut(s) | 577 |
| Hsp92II | CATG | 7 cut(s) | 287, 318, 373, 599, 617, 629, 650 |
| Kpn2I | TCCGGA | 1 cut(s) | 432 |
| Kzo9I | GATC | 4 cut(s) | 7, 199, 429, 583 |
| LpnPI | CCDG | 5 cut(s) | 25, 33, 199, 446, 494 |
| LweI | GCATC | 1 cut(s) | 244 |
| MaeI | CTAG | 4 cut(s) | 204, 299, 473, 491 |
| MaeII | ACGT | 1 cut(s) | 577 |
| MaeIII | GTNAC | 1 cut(s) | 372 |
| MalI | GATC | 4 cut(s) | 9, 201, 431, 585 |
| MboI | GATC | 4 cut(s) | 7, 199, 429, 583 |
| MboII | GAAGA | 3 cut(s) | 244, 431, 448 |
| MhlI | GDGCHC | 1 cut(s) | 498 |
| MluCI | AATT | 6 cut(s) | 23, 48, 394, 513, 526, 661 |
| MlyI | GAGTC | 1 cut(s) | 433 |
| MmeI | TCCRAC | 2 cut(s) | 35, 553 |
| MnlI | CCTC | 4 cut(s) | 338, 514, 644, 666 |
| MroI | TCCGGA | 1 cut(s) | 432 |
| MseI | TTAA | 2 cut(s) | 176, 261 |
| MspCI | CTTAAG | 1 cut(s) | 260 |
| MspI | CCGG | 1 cut(s) | 433 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 92, 651 |
| NcoI | CCATGG | 2 cut(s) | 314, 646 |
| NdeII | GATC | 4 cut(s) | 7, 199, 429, 583 |
| NlaIII | CATG | 7 cut(s) | 287, 318, 373, 599, 617, 629, 650 |
| NspI | RCATGY | 1 cut(s) | 373 |
| PagI | TCATGA | 1 cut(s) | 283 |
| PciI | ACATGT | 1 cut(s) | 369 |
| PleI | GAGTC | 1 cut(s) | 433 |
| PpsI | GAGTC | 1 cut(s) | 433 |
| PscI | ACATGT | 1 cut(s) | 369 |
| PspFI | CCCAGC | 1 cut(s) | 213 |
| PspPI | GGNCC | 1 cut(s) | 653 |
| RsaI | GTAC | 2 cut(s) | 56, 221 |
| RsaNI | GTAC | 2 cut(s) | 55, 220 |
| SaqAI | TTAA | 2 cut(s) | 176, 261 |
| Sau3AI | GATC | 4 cut(s) | 7, 199, 429, 583 |
| Sau96I | GGNCC | 1 cut(s) | 653 |
| SchI | GAGTC | 1 cut(s) | 433 |
| SduI | GDGCHC | 1 cut(s) | 498 |
| SetI | ASST | 6 cut(s) | 22, 162, 225, 540, 547, 580 |
| SfaNI | GCATC | 1 cut(s) | 244 |
| SfiI | GGCCNNNNNGGCC | 1 cut(s) | 651 |
| SmlI | CTYRAG | 1 cut(s) | 260 |
| SmoI | CTYRAG | 1 cut(s) | 260 |
| Sse9I | AATT | 6 cut(s) | 23, 48, 394, 513, 526, 661 |
| SsiI | CCGC | 1 cut(s) | 84 |
| SspMI | CTAG | 4 cut(s) | 204, 299, 473, 491 |
| StyI | CCWWGG | 2 cut(s) | 314, 646 |
| TaaI | ACNGT | 3 cut(s) | 150, 249, 310 |
| TaiI | ACGT | 1 cut(s) | 580 |
| TaqI | TCGA | 2 cut(s) | 16, 117 |
| TasI | AATT | 6 cut(s) | 23, 48, 394, 513, 526, 661 |
| Tru1I | TTAA | 2 cut(s) | 176, 261 |
| Tru9I | TTAA | 2 cut(s) | 176, 261 |
| TscAI | CASTG | 1 cut(s) | 112 |
| TspDTI | ATGAA | 3 cut(s) | 272, 336, 630 |
| TspRI | CASTG | 1 cut(s) | 112 |
| Vha464I | CTTAAG | 1 cut(s) | 260 |
| XapI | RAATTY | 2 cut(s) | 23, 513 |
| XceI | RCATGY | 1 cut(s) | 373 |
| XspI | CTAG | 4 cut(s) | 204, 299, 473, 491 |