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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 612 |
| AccB1I | GGYRCC | 2 cut(s) | 705, 906 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 648 |
| AciI | CCGC | 3 cut(s) | 310, 898, 1213 |
| AclWI | GGATC | 5 cut(s) | 406, 560, 836, 922, 1202 |
| AcsI | RAATTY | 3 cut(s) | 4, 376, 495 |
| AcuI | CTGAAG | 3 cut(s) | 426, 704, 1241 |
| AdeI | CACNNNGTG | 3 cut(s) | 596, 1226, 1406 |
| AfaI | GTAC | 4 cut(s) | 37, 203, 1024, 1056 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 45, 196, 297, 648, 1363, 1364, 1365 |
| AflII | CTTAAG | 1 cut(s) | 242 |
| AgsI | TTSAA | 7 cut(s) | 209, 214, 343, 836, 1101, 1123, 1142 |
| AjiI | CACGTC | 2 cut(s) | 371, 560 |
| AluBI | AGCT | 1 cut(s) | 1328 |
| AluI | AGCT | 1 cut(s) | 1328 |
| Alw26I | GTCTC | 2 cut(s) | 880, 1203 |
| AlwI | GGATC | 5 cut(s) | 406, 560, 836, 922, 1202 |
| Ama87I | CYCGRG | 1 cut(s) | 500 |
| AoxI | GGCC | 5 cut(s) | 625, 634, 672, 1417, 1446 |
| ApeKI | GCWGC | 1 cut(s) | 1328 |
| ApoI | RAATTY | 3 cut(s) | 4, 376, 495 |
| AspA2I | CCTAGG | 1 cut(s) | 901 |
| AspS9I | GGNCC | 5 cut(s) | 128, 625, 635, 673, 1016 |
| AsuC2I | CCSGG | 1 cut(s) | 912 |
| AsuHPI | GGTGA | 2 cut(s) | 154, 841 |
| AvaI | CYCGRG | 1 cut(s) | 500 |
| AvaII | GGWCC | 2 cut(s) | 128, 1016 |
| AvrII | CCTAGG | 1 cut(s) | 901 |
| BaeGI | GKGCMC | 3 cut(s) | 708, 909, 1371 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 19, 52 |
| BanI | GGYRCC | 2 cut(s) | 705, 906 |
| BbsI | GAAGAC | 1 cut(s) | 221 |
| BbvI | GCAGC | 1 cut(s) | 1315 |
| BccI | CCATC | 3 cut(s) | 104, 119, 655 |
| BceAI | ACGGC | 1 cut(s) | 1404 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 896, 930, 1095, 1129 |
| BcnI | CCSGG | 1 cut(s) | 912 |
| BcoDI | GTCTC | 2 cut(s) | 880, 1203 |
| BfaI | CTAG | 4 cut(s) | 455, 677, 902, 1020 |
| BfmI | CTRYAG | 2 cut(s) | 756, 1377 |
| BfrI | CTTAAG | 1 cut(s) | 242 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 74, 633 |
| BisI | GCNGC | 1 cut(s) | 1329 |
| BlnI | CCTAGG | 1 cut(s) | 901 |
| BlsI | GCNGC | 1 cut(s) | 1330 |
| BmcAI | AGTACT | 1 cut(s) | 1024 |
| Bme1390I | CCNGG | 1 cut(s) | 912 |
| Bme18I | GGWCC | 2 cut(s) | 128, 1016 |
| BmeT110I | CYCGRG | 1 cut(s) | 500 |
| BmgBI | CACGTC | 2 cut(s) | 371, 560 |
| BmgT120I | GGNCC | 5 cut(s) | 128, 625, 635, 673, 1016 |
| BmiI | GGNNCC | 4 cut(s) | 477, 707, 908, 1426 |
| BmrFI | CCNGG | 1 cut(s) | 912 |
| BmsI | GCATC | 3 cut(s) | 226, 1266, 1273 |
| BpiI | GAAGAC | 1 cut(s) | 221 |
| BpmI | CTGGAG | 1 cut(s) | 494 |
| BpuEI | CTTGAG | 1 cut(s) | 52 |
| BpuMI | CCSGG | 1 cut(s) | 912 |
| Bsa29I | ATCGAT | 1 cut(s) | 1251 |
| BsaBI | GATNNNNATC | 1 cut(s) | 827 |
| BsaJI | CCNNGG | 5 cut(s) | 501, 628, 901, 910, 1420 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 45, 196, 297, 648, 1363, 1364, 1365 |
| Bse1I | ACTGG | 1 cut(s) | 463 |
| Bse3DI | GCAATG | 1 cut(s) | 1040 |
| Bse8I | GATNNNNATC | 1 cut(s) | 827 |
| BseCI | ATCGAT | 1 cut(s) | 1251 |
| BseDI | CCNNGG | 5 cut(s) | 501, 628, 901, 910, 1420 |
| BseGI | GGATG | 2 cut(s) | 241, 955 |
| BseJI | GATNNNNATC | 1 cut(s) | 827 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 45, 196, 297, 648, 1363, 1364, 1365 |
| BseMI | GCAATG | 1 cut(s) | 1040 |
| BseMII | CTCAG | 3 cut(s) | 35, 158, 1043 |
| BseNI | ACTGG | 1 cut(s) | 463 |
| BseSI | GKGCMC | 3 cut(s) | 708, 909, 1371 |
| BseXI | GCAGC | 1 cut(s) | 1315 |
| BseYI | CCCAGC | 1 cut(s) | 195 |
| Bsh1285I | CGRYCG | 1 cut(s) | 916 |
| BshFI | GGCC | 5 cut(s) | 627, 636, 674, 1419, 1448 |
| BshNI | GGYRCC | 2 cut(s) | 705, 906 |
| BshVI | ATCGAT | 1 cut(s) | 1251 |
| BsiEI | CGRYCG | 1 cut(s) | 916 |
| BsiHKCI | CYCGRG | 1 cut(s) | 500 |
| BsiSI | CCGG | 1 cut(s) | 912 |
| BslFI | GGGAC | 6 cut(s) | 261, 618, 881, 999, 1172, 1340 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 45, 196, 297, 648, 1363, 1364, 1365 |
| BsmAI | GTCTC | 2 cut(s) | 880, 1203 |
| BsmFI | GGGAC | 6 cut(s) | 261, 618, 881, 999, 1172, 1340 |
| BsnI | GGCC | 5 cut(s) | 627, 636, 674, 1419, 1448 |
| BsoBI | CYCGRG | 1 cut(s) | 500 |
| Bsp1286I | GDGCHC | 3 cut(s) | 708, 909, 1371 |
| Bsp143I | GATC | 8 cut(s) | 181, 411, 565, 828, 927, 1207, 1252, 1313 |
| Bsp19I | CCATGG | 1 cut(s) | 628 |
| BspACI | CCGC | 3 cut(s) | 310, 898, 1213 |
| BspANI | GGCC | 5 cut(s) | 627, 636, 674, 1419, 1448 |
| BspCNI | CTCAG | 3 cut(s) | 34, 159, 1042 |
| BspDI | ATCGAT | 1 cut(s) | 1251 |
| BspHI | TCATGA | 1 cut(s) | 265 |
| BspLI | GGNNCC | 4 cut(s) | 477, 707, 908, 1426 |
| BspPI | GGATC | 5 cut(s) | 406, 560, 836, 922, 1202 |
| BspT107I | GGYRCC | 2 cut(s) | 705, 906 |
| BspTI | CTTAAG | 1 cut(s) | 242 |
| BsrDI | GCAATG | 1 cut(s) | 1040 |
| BsrI | ACTGG | 1 cut(s) | 463 |
| BssECI | CCNNGG | 5 cut(s) | 501, 628, 901, 910, 1420 |
| BssMI | GATC | 8 cut(s) | 181, 411, 565, 828, 927, 1207, 1252, 1313 |
| BssT1I | CCWWGG | 2 cut(s) | 628, 901 |
| Bst4CI | ACNGT | 7 cut(s) | 132, 231, 292, 646, 874, 1038, 1373 |
| Bst6I | CTCTTC | 1 cut(s) | 1431 |
| BstAFI | CTTAAG | 1 cut(s) | 242 |
| BstC8I | GCNNGC | 4 cut(s) | 314, 654, 672, 1341 |
| BstDEI | CTNAG | 7 cut(s) | 21, 167, 185, 710, 1029, 1157, 1403 |
| BstDSI | CCRYGG | 2 cut(s) | 628, 1420 |
| BstF5I | GGATG | 2 cut(s) | 241, 955 |
| BstKTI | GATC | 8 cut(s) | 184, 414, 568, 831, 930, 1210, 1255, 1316 |
| BstMAI | GTCTC | 2 cut(s) | 880, 1203 |
| BstMBI | GATC | 8 cut(s) | 181, 411, 565, 828, 927, 1207, 1252, 1313 |
| BstMCI | CGRYCG | 1 cut(s) | 916 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 74, 633 |
| BstSCI | CCNGG | 1 cut(s) | 910 |
| BstSFI | CTRYAG | 2 cut(s) | 756, 1377 |
| BstSLI | GKGCMC | 3 cut(s) | 708, 909, 1371 |
| BstV1I | GCAGC | 1 cut(s) | 1315 |
| BstV2I | GAAGAC | 1 cut(s) | 221 |
| Bsu15I | ATCGAT | 1 cut(s) | 1251 |
| BsuRI | GGCC | 5 cut(s) | 627, 636, 674, 1419, 1448 |
| BsuTUI | ATCGAT | 1 cut(s) | 1251 |
| BtgI | CCRYGG | 2 cut(s) | 628, 1420 |
| BtrI | CACGTC | 2 cut(s) | 371, 560 |
| BtsCI | GGATG | 2 cut(s) | 241, 955 |
| BtsI | GCAGTG | 2 cut(s) | 87, 1001 |
| BtsIMutI | CAGTG | 7 cut(s) | 87, 108, 302, 642, 870, 1001, 1378 |
| Cac8I | GCNNGC | 4 cut(s) | 314, 654, 672, 1341 |
| CciI | TCATGA | 1 cut(s) | 265 |
| Cfr13I | GGNCC | 5 cut(s) | 128, 625, 635, 673, 1016 |
| ClaI | ATCGAT | 1 cut(s) | 1251 |
| Csp6I | GTAC | 4 cut(s) | 36, 202, 1023, 1055 |
| CviAII | CATG | 9 cut(s) | 266, 578, 594, 608, 629, 685, 752, 893, 922 |
| CviQI | GTAC | 4 cut(s) | 36, 202, 1023, 1055 |
| DdeI | CTNAG | 7 cut(s) | 21, 167, 185, 710, 1029, 1157, 1403 |
| DpnI | GATC | 8 cut(s) | 183, 413, 567, 830, 929, 1209, 1254, 1315 |
| DpnII | GATC | 8 cut(s) | 181, 411, 565, 828, 927, 1207, 1252, 1313 |
| DraI | TTTAAA | 1 cut(s) | 939 |
| DraIII | CACNNNGTG | 3 cut(s) | 596, 1226, 1406 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 612 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 612 |
| Eam1104I | CTCTTC | 1 cut(s) | 1431 |
| EarI | CTCTTC | 1 cut(s) | 1431 |
| Eco130I | CCWWGG | 2 cut(s) | 628, 901 |
| Eco32I | GATATC | 1 cut(s) | 1297 |
| Eco47I | GGWCC | 2 cut(s) | 128, 1016 |
| Eco57I | CTGAAG | 3 cut(s) | 426, 704, 1241 |
| Eco88I | CYCGRG | 1 cut(s) | 500 |
| EcoO109I | RGGNCCY | 1 cut(s) | 635 |
| EcoRV | GATATC | 1 cut(s) | 1297 |
| EcoT14I | CCWWGG | 2 cut(s) | 628, 901 |
| ErhI | CCWWGG | 2 cut(s) | 628, 901 |
| FaeI | CATG | 9 cut(s) | 269, 581, 597, 611, 632, 688, 755, 896, 925 |
| FaqI | GGGAC | 6 cut(s) | 261, 618, 881, 999, 1172, 1340 |
| FatI | CATG | 9 cut(s) | 265, 577, 593, 607, 628, 684, 751, 892, 921 |
| FauI | CCCGC | 1 cut(s) | 1220 |
| FauNDI | CATATG | 1 cut(s) | 949 |
| Fnu4HI | GCNGC | 1 cut(s) | 1329 |
| FokI | GGATG | 2 cut(s) | 248, 942 |
| Fsp4HI | GCNGC | 1 cut(s) | 1329 |
| FspBI | CTAG | 4 cut(s) | 455, 677, 902, 1020 |
| GluI | GCNGC | 1 cut(s) | 1329 |
| GsaI | CCCAGC | 1 cut(s) | 199 |
| GsuI | CTGGAG | 1 cut(s) | 494 |
| HaeIII | GGCC | 5 cut(s) | 627, 636, 674, 1419, 1448 |
| HapII | CCGG | 1 cut(s) | 912 |
| Hin1II | CATG | 9 cut(s) | 269, 581, 597, 611, 632, 688, 755, 896, 925 |
| HinfI | GANTC | 6 cut(s) | 19, 767, 793, 823, 836, 1271 |
| HpaII | CCGG | 1 cut(s) | 912 |
| HphI | GGTGA | 2 cut(s) | 154, 841 |
| Hpy166II | GTNNAC | 3 cut(s) | 300, 806, 1290 |
| Hpy188I | TCNGA | 7 cut(s) | 24, 55, 136, 168, 828, 1032, 1260 |
| Hpy188III | TCNNGA | 5 cut(s) | 266, 415, 500, 617, 917 |
| Hpy8I | GTNNAC | 3 cut(s) | 300, 806, 1290 |
| HpyAV | CCTTC | 5 cut(s) | 79, 215, 412, 728, 970 |
| HpyCH4III | ACNGT | 7 cut(s) | 132, 231, 292, 646, 874, 1038, 1373 |
| HpyCH4IV | ACGT | 4 cut(s) | 250, 370, 559, 1146 |
| HpyCH4V | TGCA | 7 cut(s) | 545, 590, 656, 699, 1006, 1331, 1343 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 74, 633 |
| HpyF3I | CTNAG | 7 cut(s) | 21, 167, 185, 710, 1029, 1157, 1403 |
| HpySE526I | ACGT | 4 cut(s) | 250, 370, 559, 1146 |
| Hsp92II | CATG | 9 cut(s) | 269, 581, 597, 611, 632, 688, 755, 896, 925 |
| Kzo9I | GATC | 8 cut(s) | 181, 411, 565, 828, 927, 1207, 1252, 1313 |
| LmnI | GCTCC | 2 cut(s) | 475, 1430 |
| Lsp1109I | GCAGC | 1 cut(s) | 1315 |
| LweI | GCATC | 3 cut(s) | 226, 1266, 1273 |
| MaeI | CTAG | 4 cut(s) | 455, 677, 902, 1020 |
| MaeII | ACGT | 4 cut(s) | 250, 370, 559, 1146 |
| MaeIII | GTNAC | 4 cut(s) | 847, 917, 997, 1306 |
| MalI | GATC | 8 cut(s) | 183, 413, 567, 830, 929, 1209, 1254, 1315 |
| MboI | GATC | 8 cut(s) | 181, 411, 565, 828, 927, 1207, 1252, 1313 |
| MboII | GAAGA | 5 cut(s) | 226, 413, 1130, 1247, 1448 |
| MfeI | CAATTG | 1 cut(s) | 209 |
| MhlI | GDGCHC | 3 cut(s) | 708, 909, 1371 |
| MluCI | AATT | 8 cut(s) | 4, 209, 376, 447, 495, 508, 1152, 1172 |
| MlyI | GAGTC | 3 cut(s) | 13, 776, 802 |
| MseI | TTAA | 3 cut(s) | 158, 243, 938 |
| MspA1I | CMGCKG | 1 cut(s) | 1328 |
| MspCI | CTTAAG | 1 cut(s) | 242 |
| MspI | CCGG | 1 cut(s) | 912 |
| MspR9I | CCNGG | 1 cut(s) | 912 |
| MunI | CAATTG | 1 cut(s) | 209 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 74, 633 |
| NciI | CCSGG | 1 cut(s) | 912 |
| NcoI | CCATGG | 1 cut(s) | 628 |
| NdeI | CATATG | 1 cut(s) | 949 |
| NdeII | GATC | 8 cut(s) | 181, 411, 565, 828, 927, 1207, 1252, 1313 |
| NlaIII | CATG | 9 cut(s) | 269, 581, 597, 611, 632, 688, 755, 896, 925 |
| NlaIV | GGNNCC | 4 cut(s) | 477, 707, 908, 1426 |
| NmuCI | GTSAC | 4 cut(s) | 847, 917, 997, 1306 |
| PagI | TCATGA | 1 cut(s) | 265 |
| PfeI | GAWTC | 3 cut(s) | 823, 836, 1271 |
| PflFI | GACNNNGTC | 2 cut(s) | 872, 1036 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 648 |
| PkrI | GCNGC | 1 cut(s) | 1330 |
| PleI | GAGTC | 3 cut(s) | 13, 775, 801 |
| PpsI | GAGTC | 3 cut(s) | 13, 775, 801 |
| PspFI | CCCAGC | 1 cut(s) | 195 |
| PspN4I | GGNNCC | 4 cut(s) | 477, 707, 908, 1426 |
| PspPI | GGNCC | 5 cut(s) | 128, 625, 635, 673, 1016 |
| PsyI | GACNNNGTC | 2 cut(s) | 872, 1036 |
| PvuII | CAGCTG | 1 cut(s) | 1328 |
| RsaI | GTAC | 4 cut(s) | 37, 203, 1024, 1056 |
| RsaNI | GTAC | 4 cut(s) | 36, 202, 1023, 1055 |
| SaqAI | TTAA | 3 cut(s) | 158, 243, 938 |
| SatI | GCNGC | 1 cut(s) | 1329 |
| Sau3AI | GATC | 8 cut(s) | 181, 411, 565, 828, 927, 1207, 1252, 1313 |
| Sau96I | GGNCC | 5 cut(s) | 128, 625, 635, 673, 1016 |
| ScaI | AGTACT | 1 cut(s) | 1024 |
| SchI | GAGTC | 3 cut(s) | 13, 776, 802 |
| ScrFI | CCNGG | 1 cut(s) | 912 |
| SduI | GDGCHC | 3 cut(s) | 708, 909, 1371 |
| SfaNI | GCATC | 3 cut(s) | 226, 1266, 1273 |
| SfcI | CTRYAG | 2 cut(s) | 756, 1377 |
| SfiI | GGCCNNNNNGGCC | 1 cut(s) | 633 |
| SinI | GGWCC | 2 cut(s) | 128, 1016 |
| SmlI | CTYRAG | 2 cut(s) | 31, 242 |
| SmoI | CTYRAG | 2 cut(s) | 31, 242 |
| Sse9I | AATT | 8 cut(s) | 4, 209, 376, 447, 495, 508, 1152, 1172 |
| SsiI | CCGC | 3 cut(s) | 310, 898, 1213 |
| SspMI | CTAG | 4 cut(s) | 455, 677, 902, 1020 |
| StyD4I | CCNGG | 1 cut(s) | 910 |
| StyI | CCWWGG | 2 cut(s) | 628, 901 |
| TaaI | ACNGT | 7 cut(s) | 132, 231, 292, 646, 874, 1038, 1373 |
| TaiI | ACGT | 4 cut(s) | 253, 373, 562, 1149 |
| TaqI | TCGA | 5 cut(s) | 796, 967, 1251, 1274, 1458 |
| TaqII | GACCGA | 1 cut(s) | 1004 |
| TasI | AATT | 8 cut(s) | 4, 209, 376, 447, 495, 508, 1152, 1172 |
| TatI | WGTACW | 1 cut(s) | 1022 |
| TfiI | GAWTC | 3 cut(s) | 823, 836, 1271 |
| Tru1I | TTAA | 3 cut(s) | 158, 243, 938 |
| Tru9I | TTAA | 3 cut(s) | 158, 243, 938 |
| TscAI | CASTG | 7 cut(s) | 94, 115, 302, 649, 877, 1008, 1378 |
| TseFI | GTSAC | 4 cut(s) | 847, 917, 997, 1306 |
| TseI | GCWGC | 1 cut(s) | 1328 |
| Tsp45I | GTSAC | 4 cut(s) | 847, 917, 997, 1306 |
| TspDTI | ATGAA | 3 cut(s) | 254, 873, 1449 |
| TspGWI | ACGGA | 3 cut(s) | 41, 920, 985 |
| TspRI | CASTG | 7 cut(s) | 94, 115, 302, 649, 877, 1008, 1378 |
| Tth111I | GACNNNGTC | 2 cut(s) | 872, 1036 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 648 |
| Vha464I | CTTAAG | 1 cut(s) | 242 |
| VpaK11BI | GGWCC | 2 cut(s) | 128, 1016 |
| XapI | RAATTY | 3 cut(s) | 4, 376, 495 |
| XmaJI | CCTAGG | 1 cut(s) | 901 |
| XspI | CTAG | 4 cut(s) | 455, 677, 902, 1020 |
| ZrmI | AGTACT | 1 cut(s) | 1024 |