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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 2 cut(s) | 551, 898 |
| AccII | CGCG | 2 cut(s) | 29, 795 |
| AccIII | TCCGGA | 1 cut(s) | 15 |
| AcoI | YGGCCR | 2 cut(s) | 752, 796 |
| AcsI | RAATTY | 3 cut(s) | 19, 171, 977 |
| AcuI | CTGAAG | 2 cut(s) | 852, 1163 |
| AcyI | GRCGYC | 2 cut(s) | 78, 932 |
| AfaI | GTAC | 6 cut(s) | 32, 64, 132, 299, 428, 1010 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 22, 473, 875, 947, 1018 |
| AgsI | TTSAA | 4 cut(s) | 188, 239, 514, 1186 |
| AjiI | CACGTC | 1 cut(s) | 491 |
| AjnI | CCWGG | 3 cut(s) | 346, 466, 543 |
| AluBI | AGCT | 2 cut(s) | 874, 1161 |
| AluI | AGCT | 2 cut(s) | 874, 1161 |
| Alw26I | GTCTC | 2 cut(s) | 566, 907 |
| Ama87I | CYCGRG | 1 cut(s) | 204 |
| Aor13HI | TCCGGA | 1 cut(s) | 15 |
| AoxI | GGCC | 7 cut(s) | 497, 517, 546, 714, 752, 796, 949 |
| ApeKI | GCWGC | 5 cut(s) | 555, 758, 843, 854, 857 |
| ApoI | RAATTY | 3 cut(s) | 19, 171, 977 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1176 |
| AspLEI | GCGC | 2 cut(s) | 811, 862 |
| AspS9I | GGNCC | 2 cut(s) | 477, 1100 |
| AsuC2I | CCSGG | 1 cut(s) | 948 |
| AsuHPI | GGTGA | 2 cut(s) | 485, 1126 |
| AsuNHI | GCTAGC | 1 cut(s) | 884 |
| AvaI | CYCGRG | 1 cut(s) | 204 |
| AvaII | GGWCC | 2 cut(s) | 477, 1100 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 46, 79, 992, 1025 |
| BamHI | GGATCC | 1 cut(s) | 892 |
| BbsI | GAAGAC | 1 cut(s) | 1193 |
| BbvI | GCAGC | 5 cut(s) | 542, 770, 855, 866, 869 |
| BccI | CCATC | 6 cut(s) | 353, 511, 738, 856, 1076, 1091 |
| BceAI | ACGGC | 2 cut(s) | 45, 532 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 919, 953 |
| BciT130I | CCWGG | 3 cut(s) | 348, 468, 545 |
| BcnI | CCSGG | 1 cut(s) | 948 |
| BcoDI | GTCTC | 2 cut(s) | 566, 907 |
| BfaI | CTAG | 4 cut(s) | 632, 774, 885, 1158 |
| BfmI | CTRYAG | 5 cut(s) | 55, 556, 570, 582, 852 |
| BfoI | RGCGCY | 2 cut(s) | 812, 863 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 545 |
| BglII | AGATCT | 1 cut(s) | 190 |
| BisI | GCNGC | 8 cut(s) | 76, 549, 556, 759, 796, 844, 855, 858 |
| BlsI | GCNGC | 8 cut(s) | 77, 550, 557, 760, 797, 845, 856, 859 |
| Bme1390I | CCNGG | 4 cut(s) | 348, 468, 545, 948 |
| Bme18I | GGWCC | 2 cut(s) | 477, 1100 |
| BmeT110I | CYCGRG | 1 cut(s) | 204 |
| BmgBI | CACGTC | 1 cut(s) | 491 |
| BmgT120I | GGNCC | 2 cut(s) | 477, 1100 |
| BmiI | GGNNCC | 3 cut(s) | 478, 617, 894 |
| BmrFI | CCNGG | 4 cut(s) | 348, 468, 545, 948 |
| BmtI | GCTAGC | 1 cut(s) | 888 |
| BpiI | GAAGAC | 1 cut(s) | 1193 |
| BpmI | CTGGAG | 3 cut(s) | 527, 548, 752 |
| Bpu10I | CCTNAGC | 1 cut(s) | 678 |
| BpuEI | CTTGAG | 1 cut(s) | 1025 |
| BpuMI | CCSGG | 1 cut(s) | 948 |
| BsaHI | GRCGYC | 2 cut(s) | 78, 932 |
| BsaJI | CCNNGG | 1 cut(s) | 946 |
| BsaWI | WCCGGW | 2 cut(s) | 15, 300 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 581, 611 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 22, 473, 875, 947, 1018 |
| Bse118I | RCCGGY | 3 cut(s) | 495, 712, 750 |
| Bse1I | ACTGG | 3 cut(s) | 413, 696, 912 |
| BseAI | TCCGGA | 1 cut(s) | 15 |
| BseBI | CCWGG | 3 cut(s) | 348, 468, 545 |
| BseDI | CCNNGG | 1 cut(s) | 946 |
| BseGI | GGATG | 2 cut(s) | 503, 1068 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 22, 473, 875, 947, 1018 |
| BseMII | CTCAG | 6 cut(s) | 114, 293, 444, 669, 1008, 1130 |
| BseNI | ACTGG | 3 cut(s) | 413, 696, 912 |
| BseRI | GAGGAG | 1 cut(s) | 85 |
| BseXI | GCAGC | 5 cut(s) | 542, 770, 855, 866, 869 |
| BseYI | CCCAGC | 4 cut(s) | 535, 917, 941, 1167 |
| BsgI | GTGCAG | 2 cut(s) | 721, 892 |
| Bsh1236I | CGCG | 2 cut(s) | 29, 795 |
| BshFI | GGCC | 7 cut(s) | 499, 519, 548, 716, 754, 798, 951 |
| BsiHKCI | CYCGRG | 1 cut(s) | 204 |
| BsiSI | CCGG | 8 cut(s) | 16, 72, 301, 496, 713, 751, 840, 948 |
| BsiWI | CGTACG | 1 cut(s) | 130 |
| BslFI | GGGAC | 2 cut(s) | 490, 900 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 22, 473, 875, 947, 1018 |
| BsmAI | GTCTC | 2 cut(s) | 566, 907 |
| BsmBI | CGTCTC | 1 cut(s) | 907 |
| BsmFI | GGGAC | 2 cut(s) | 490, 900 |
| BsnI | GGCC | 7 cut(s) | 499, 519, 548, 716, 754, 798, 951 |
| BsoBI | CYCGRG | 1 cut(s) | 204 |
| Bsp13I | TCCGGA | 1 cut(s) | 15 |
| BspANI | GGCC | 7 cut(s) | 499, 519, 548, 716, 754, 798, 951 |
| BspCNI | CTCAG | 6 cut(s) | 115, 292, 445, 670, 1007, 1131 |
| BspEI | TCCGGA | 1 cut(s) | 15 |
| BspFNI | CGCG | 2 cut(s) | 29, 795 |
| BspLI | GGNNCC | 3 cut(s) | 478, 617, 894 |
| BspMAI | CTGCAG | 2 cut(s) | 560, 856 |
| BspOI | GCTAGC | 1 cut(s) | 888 |
| BspQI | GCTCTTC | 1 cut(s) | 122 |
| BsrBI | CCGCTC | 2 cut(s) | 551, 898 |
| BsrFI | RCCGGY | 3 cut(s) | 495, 712, 750 |
| BsrI | ACTGG | 3 cut(s) | 413, 696, 912 |
| BssAI | RCCGGY | 3 cut(s) | 495, 712, 750 |
| BssECI | CCNNGG | 1 cut(s) | 946 |
| BssNI | GRCGYC | 2 cut(s) | 78, 932 |
| Bst2UI | CCWGG | 3 cut(s) | 348, 468, 545 |
| Bst4CI | ACNGT | 4 cut(s) | 315, 1016, 1039, 1104 |
| Bst6I | CTCTTC | 1 cut(s) | 122 |
| BstACI | GRCGYC | 2 cut(s) | 78, 932 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 627 |
| BstC8I | GCNNGC | 9 cut(s) | 484, 553, 623, 643, 662, 684, 714, 756, 886 |
| BstDEI | CTNAG | 6 cut(s) | 123, 279, 453, 678, 994, 1139 |
| BstF5I | GGATG | 2 cut(s) | 503, 1068 |
| BstFNI | CGCG | 2 cut(s) | 29, 795 |
| BstH2I | RGCGCY | 2 cut(s) | 812, 863 |
| BstHHI | GCGC | 2 cut(s) | 811, 862 |
| BstMAI | GTCTC | 2 cut(s) | 566, 907 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 545, 627, 647, 670, 679, 692, 827 |
| BstNI | CCWGG | 3 cut(s) | 348, 468, 545 |
| BstSCI | CCNGG | 4 cut(s) | 346, 466, 543, 946 |
| BstSFI | CTRYAG | 5 cut(s) | 55, 556, 570, 582, 852 |
| BstUI | CGCG | 2 cut(s) | 29, 795 |
| BstV1I | GCAGC | 5 cut(s) | 542, 770, 855, 866, 869 |
| BstV2I | GAAGAC | 1 cut(s) | 1193 |
| BstX2I | RGATCY | 4 cut(s) | 12, 190, 262, 892 |
| BstYI | RGATCY | 4 cut(s) | 12, 190, 262, 892 |
| BsuRI | GGCC | 7 cut(s) | 499, 519, 548, 716, 754, 798, 951 |
| BtrI | CACGTC | 1 cut(s) | 491 |
| BtsCI | GGATG | 2 cut(s) | 503, 1068 |
| BtsI | GCAGTG | 2 cut(s) | 733, 1059 |
| BtsIMutI | CAGTG | 5 cut(s) | 311, 689, 733, 1059, 1080 |
| Cac8I | GCNNGC | 9 cut(s) | 484, 553, 623, 643, 662, 684, 714, 756, 886 |
| CfoI | GCGC | 2 cut(s) | 811, 862 |
| Cfr10I | RCCGGY | 3 cut(s) | 495, 712, 750 |
| Cfr13I | GGNCC | 2 cut(s) | 477, 1100 |
| CseI | GACGC | 2 cut(s) | 67, 940 |
| Csp6I | GTAC | 6 cut(s) | 31, 63, 131, 298, 427, 1009 |
| CviQI | GTAC | 6 cut(s) | 31, 63, 131, 298, 427, 1009 |
| DdeI | CTNAG | 6 cut(s) | 123, 279, 453, 678, 994, 1139 |
| EaeI | YGGCCR | 2 cut(s) | 752, 796 |
| Eam1104I | CTCTTC | 1 cut(s) | 122 |
| EarI | CTCTTC | 1 cut(s) | 122 |
| EciI | GGCGGA | 1 cut(s) | 855 |
| Eco47I | GGWCC | 2 cut(s) | 477, 1100 |
| Eco57I | CTGAAG | 2 cut(s) | 852, 1163 |
| Eco88I | CYCGRG | 1 cut(s) | 204 |
| EcoRII | CCWGG | 3 cut(s) | 346, 466, 543 |
| Esp3I | CGTCTC | 1 cut(s) | 907 |
| FaiI | YATR | 8 cut(s) | 107, 219, 251, 272, 288, 404, 414, 1149 |
| FaqI | GGGAC | 2 cut(s) | 490, 900 |
| FauI | CCCGC | 2 cut(s) | 881, 931 |
| Fnu4HI | GCNGC | 8 cut(s) | 76, 549, 556, 759, 796, 844, 855, 858 |
| FokI | GGATG | 2 cut(s) | 490, 1055 |
| Fsp4HI | GCNGC | 8 cut(s) | 76, 549, 556, 759, 796, 844, 855, 858 |
| FspBI | CTAG | 4 cut(s) | 632, 774, 885, 1158 |
| GlaI | GCGC | 2 cut(s) | 810, 861 |
| GluI | GCNGC | 8 cut(s) | 76, 549, 556, 759, 796, 844, 855, 858 |
| GsaI | CCCAGC | 4 cut(s) | 539, 921, 945, 1171 |
| GsuI | CTGGAG | 3 cut(s) | 527, 548, 752 |
| HaeII | RGCGCY | 2 cut(s) | 812, 863 |
| HaeIII | GGCC | 7 cut(s) | 499, 519, 548, 716, 754, 798, 951 |
| HapII | CCGG | 8 cut(s) | 16, 72, 301, 496, 713, 751, 840, 948 |
| HgaI | GACGC | 2 cut(s) | 67, 940 |
| HhaI | GCGC | 2 cut(s) | 811, 862 |
| Hin1I | GRCGYC | 2 cut(s) | 78, 932 |
| Hin6I | GCGC | 2 cut(s) | 809, 860 |
| HinP1I | GCGC | 2 cut(s) | 809, 860 |
| HinfI | GANTC | 6 cut(s) | 200, 306, 434, 510, 836, 992 |
| HpaII | CCGG | 8 cut(s) | 16, 72, 301, 496, 713, 751, 840, 948 |
| HphI | GGTGA | 2 cut(s) | 485, 1126 |
| Hpy188I | TCNGA | 8 cut(s) | 124, 199, 262, 282, 439, 878, 997, 1140 |
| Hpy188III | TCNNGA | 4 cut(s) | 16, 507, 613, 677 |
| Hpy99I | CGWCG | 2 cut(s) | 402, 934 |
| HpyAV | CCTTC | 5 cut(s) | 338, 530, 610, 992, 1187 |
| HpyCH4III | ACNGT | 4 cut(s) | 315, 1016, 1039, 1104 |
| HpyCH4IV | ACGT | 1 cut(s) | 490 |
| HpyCH4V | TGCA | 5 cut(s) | 558, 686, 738, 854, 909 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 545, 627, 647, 670, 679, 692, 827 |
| HpyF3I | CTNAG | 6 cut(s) | 123, 279, 453, 678, 994, 1139 |
| HpySE526I | ACGT | 1 cut(s) | 490 |
| Hsp92I | GRCGYC | 2 cut(s) | 78, 932 |
| HspAI | GCGC | 2 cut(s) | 809, 860 |
| Kpn2I | TCCGGA | 1 cut(s) | 15 |
| KroI | GCCGGC | 1 cut(s) | 712 |
| KroNI | GCCGGC | 1 cut(s) | 714 |
| LguI | GCTCTTC | 1 cut(s) | 122 |
| LmnI | GCTCC | 2 cut(s) | 114, 771 |
| Lsp1109I | GCAGC | 5 cut(s) | 542, 770, 855, 866, 869 |
| MaeI | CTAG | 4 cut(s) | 632, 774, 885, 1158 |
| MaeII | ACGT | 1 cut(s) | 490 |
| MaeIII | GTNAC | 1 cut(s) | 491 |
| MbiI | CCGCTC | 2 cut(s) | 551, 898 |
| MboII | GAAGA | 4 cut(s) | 109, 200, 845, 1198 |
| MflI | RGATCY | 4 cut(s) | 12, 190, 262, 892 |
| MluCI | AATT | 8 cut(s) | 19, 171, 214, 226, 339, 369, 977, 1199 |
| MlyI | GAGTC | 1 cut(s) | 986 |
| MmeI | TCCRAC | 2 cut(s) | 290, 989 |
| MroI | TCCGGA | 1 cut(s) | 15 |
| MroNI | GCCGGC | 1 cut(s) | 712 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1176 |
| MseI | TTAA | 1 cut(s) | 1130 |
| MslI | CAYNNNNRTG | 1 cut(s) | 104 |
| MspI | CCGG | 8 cut(s) | 16, 72, 301, 496, 713, 751, 840, 948 |
| MspR9I | CCNGG | 4 cut(s) | 348, 468, 545, 948 |
| MvaI | CCWGG | 3 cut(s) | 348, 468, 545 |
| MvnI | CGCG | 2 cut(s) | 29, 795 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 545, 627, 647, 670, 679, 692, 827 |
| NaeI | GCCGGC | 1 cut(s) | 714 |
| NciI | CCSGG | 1 cut(s) | 948 |
| NgoMIV | GCCGGC | 1 cut(s) | 712 |
| NheI | GCTAGC | 1 cut(s) | 884 |
| NlaIV | GGNNCC | 3 cut(s) | 478, 617, 894 |
| NmuCI | GTSAC | 1 cut(s) | 491 |
| PciSI | GCTCTTC | 1 cut(s) | 122 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 33 |
| PdiI | GCCGGC | 1 cut(s) | 714 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1176 |
| PfeI | GAWTC | 5 cut(s) | 200, 306, 434, 510, 836 |
| Pfl23II | CGTACG | 1 cut(s) | 130 |
| PfoI | TCCNGGA | 1 cut(s) | 466 |
| PkrI | GCNGC | 8 cut(s) | 77, 550, 557, 760, 797, 845, 856, 859 |
| PleI | GAGTC | 1 cut(s) | 986 |
| PpsI | GAGTC | 1 cut(s) | 986 |
| Psp6I | CCWGG | 3 cut(s) | 346, 466, 543 |
| PspFI | CCCAGC | 4 cut(s) | 535, 917, 941, 1167 |
| PspGI | CCWGG | 3 cut(s) | 346, 466, 543 |
| PspLI | CGTACG | 1 cut(s) | 130 |
| PspN4I | GGNNCC | 3 cut(s) | 478, 617, 894 |
| PspPI | GGNCC | 2 cut(s) | 477, 1100 |
| PstI | CTGCAG | 2 cut(s) | 560, 856 |
| PsuI | RGATCY | 4 cut(s) | 12, 190, 262, 892 |
| RsaI | GTAC | 6 cut(s) | 32, 64, 132, 299, 428, 1010 |
| RsaNI | GTAC | 6 cut(s) | 31, 63, 131, 298, 427, 1009 |
| RseI | CAYNNNNRTG | 1 cut(s) | 104 |
| SapI | GCTCTTC | 1 cut(s) | 122 |
| SaqAI | TTAA | 1 cut(s) | 1130 |
| SatI | GCNGC | 8 cut(s) | 76, 549, 556, 759, 796, 844, 855, 858 |
| Sau96I | GGNCC | 2 cut(s) | 477, 1100 |
| SchI | GAGTC | 1 cut(s) | 986 |
| ScrFI | CCNGG | 4 cut(s) | 348, 468, 545, 948 |
| SfcI | CTRYAG | 5 cut(s) | 55, 556, 570, 582, 852 |
| SinI | GGWCC | 2 cut(s) | 477, 1100 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 104 |
| SmlI | CTYRAG | 1 cut(s) | 1004 |
| SmoI | CTYRAG | 1 cut(s) | 1004 |
| Sse9I | AATT | 8 cut(s) | 19, 171, 214, 226, 339, 369, 977, 1199 |
| SspMI | CTAG | 4 cut(s) | 632, 774, 885, 1158 |
| StyD4I | CCNGG | 4 cut(s) | 346, 466, 543, 946 |
| TaaI | ACNGT | 4 cut(s) | 315, 1016, 1039, 1104 |
| TaiI | ACGT | 1 cut(s) | 493 |
| TaqI | TCGA | 4 cut(s) | 343, 530, 603, 970 |
| TasI | AATT | 8 cut(s) | 19, 171, 214, 226, 339, 369, 977, 1199 |
| TauI | GCSGC | 3 cut(s) | 78, 551, 798 |
| TfiI | GAWTC | 5 cut(s) | 200, 306, 434, 510, 836 |
| Tru1I | TTAA | 1 cut(s) | 1130 |
| Tru9I | TTAA | 1 cut(s) | 1130 |
| TscAI | CASTG | 5 cut(s) | 318, 696, 740, 1066, 1087 |
| TseFI | GTSAC | 1 cut(s) | 491 |
| TseI | GCWGC | 5 cut(s) | 555, 758, 843, 854, 857 |
| Tsp45I | GTSAC | 1 cut(s) | 491 |
| TspDTI | ATGAA | 5 cut(s) | 20, 172, 234, 320, 419 |
| TspGWI | ACGGA | 1 cut(s) | 768 |
| TspRI | CASTG | 5 cut(s) | 318, 696, 740, 1066, 1087 |
| VpaK11BI | GGWCC | 2 cut(s) | 477, 1100 |
| XapI | RAATTY | 3 cut(s) | 19, 171, 977 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1176 |
| XspI | CTAG | 4 cut(s) | 632, 774, 885, 1158 |