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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 2 cut(s) | 735, 1000 |
| AatII | GACGTC | 1 cut(s) | 1004 |
| AccB1I | GGYRCC | 1 cut(s) | 816 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 771 |
| AciI | CCGC | 3 cut(s) | 41, 68, 442 |
| AclWI | GGATC | 4 cut(s) | 116, 308, 538, 683 |
| AcsI | RAATTY | 2 cut(s) | 508, 618 |
| AcuI | CTGAAG | 4 cut(s) | 323, 558, 645, 815 |
| AcvI | CACGTG | 2 cut(s) | 701, 719 |
| AcyI | GRCGYC | 1 cut(s) | 1001 |
| AdeI | CACNNNGTG | 1 cut(s) | 719 |
| AfaI | GTAC | 2 cut(s) | 170, 895 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 178, 328, 429, 771 |
| AflII | CTTAAG | 1 cut(s) | 374 |
| AflIII | ACRYGT | 1 cut(s) | 483 |
| AgsI | TTSAA | 4 cut(s) | 55, 75, 346, 475 |
| AjiI | CACGTC | 1 cut(s) | 683 |
| AluBI | AGCT | 2 cut(s) | 46, 629 |
| AluI | AGCT | 2 cut(s) | 46, 629 |
| Alw26I | GTCTC | 2 cut(s) | 207, 602 |
| AlwI | GGATC | 4 cut(s) | 116, 308, 538, 683 |
| AoxI | GGCC | 4 cut(s) | 748, 757, 783, 987 |
| ApeKI | GCWGC | 3 cut(s) | 43, 103, 925 |
| ApoI | RAATTY | 2 cut(s) | 508, 618 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 336 |
| AspLEI | GCGC | 2 cut(s) | 103, 492 |
| AspS9I | GGNCC | 5 cut(s) | 151, 260, 748, 758, 784 |
| AsuHPI | GGTGA | 1 cut(s) | 286 |
| AvaII | GGWCC | 2 cut(s) | 151, 260 |
| BaeGI | GKGCMC | 2 cut(s) | 34, 819 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 152, 185 |
| BanI | GGYRCC | 1 cut(s) | 816 |
| BauI | CACGAG | 1 cut(s) | 210 |
| BbrPI | CACGTG | 2 cut(s) | 701, 719 |
| BbsI | GAAGAC | 2 cut(s) | 353, 557 |
| BbvI | GCAGC | 3 cut(s) | 55, 90, 937 |
| BccI | CCATC | 2 cut(s) | 236, 251 |
| BceAI | ACGGC | 1 cut(s) | 735 |
| BcoDI | GTCTC | 2 cut(s) | 207, 602 |
| BfaI | CTAG | 3 cut(s) | 318, 587, 788 |
| BfmI | CTRYAG | 1 cut(s) | 867 |
| BfoI | RGCGCY | 1 cut(s) | 104 |
| BfrI | CTTAAG | 1 cut(s) | 374 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 206, 756 |
| BisI | GCNGC | 3 cut(s) | 44, 104, 926 |
| BlsI | GCNGC | 3 cut(s) | 45, 105, 927 |
| Bme18I | GGWCC | 2 cut(s) | 151, 260 |
| BmgBI | CACGTC | 1 cut(s) | 683 |
| BmgT120I | GGNCC | 5 cut(s) | 151, 260, 748, 758, 784 |
| BmiI | GGNNCC | 2 cut(s) | 153, 818 |
| BmsI | GCATC | 2 cut(s) | 358, 1047 |
| BpiI | GAAGAC | 2 cut(s) | 353, 557 |
| BpmI | CTGGAG | 1 cut(s) | 626 |
| BpuEI | CTTGAG | 1 cut(s) | 185 |
| BsaAI | YACGTR | 2 cut(s) | 701, 719 |
| BsaHI | GRCGYC | 1 cut(s) | 1001 |
| BsaJI | CCNNGG | 1 cut(s) | 751 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 178, 328, 429, 771 |
| Bse118I | RCCGGY | 1 cut(s) | 97 |
| Bse1I | ACTGG | 1 cut(s) | 595 |
| Bse3DI | GCAATG | 1 cut(s) | 861 |
| BseDI | CCNNGG | 1 cut(s) | 751 |
| BseGI | GGATG | 2 cut(s) | 22, 373 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 178, 328, 429, 771 |
| BseMI | GCAATG | 1 cut(s) | 861 |
| BseMII | CTCAG | 2 cut(s) | 126, 1060 |
| BseNI | ACTGG | 1 cut(s) | 595 |
| BseSI | GKGCMC | 2 cut(s) | 34, 819 |
| BseXI | GCAGC | 3 cut(s) | 55, 90, 937 |
| BseYI | CCCAGC | 1 cut(s) | 327 |
| BshFI | GGCC | 4 cut(s) | 750, 759, 785, 989 |
| BshNI | GGYRCC | 1 cut(s) | 816 |
| BsiSI | CCGG | 1 cut(s) | 98 |
| BslFI | GGGAC | 3 cut(s) | 66, 393, 741 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 178, 328, 429, 771 |
| BsmAI | GTCTC | 2 cut(s) | 207, 602 |
| BsmFI | GGGAC | 3 cut(s) | 66, 393, 741 |
| BsnI | GGCC | 4 cut(s) | 750, 759, 785, 989 |
| Bsp1286I | GDGCHC | 2 cut(s) | 34, 819 |
| Bsp143I | GATC | 6 cut(s) | 86, 121, 313, 543, 688, 1075 |
| BspACI | CCGC | 3 cut(s) | 41, 68, 442 |
| BspANI | GGCC | 4 cut(s) | 750, 759, 785, 989 |
| BspCNI | CTCAG | 2 cut(s) | 127, 1059 |
| BspHI | TCATGA | 1 cut(s) | 397 |
| BspLI | GGNNCC | 2 cut(s) | 153, 818 |
| BspPI | GGATC | 4 cut(s) | 116, 308, 538, 683 |
| BspT107I | GGYRCC | 1 cut(s) | 816 |
| BspTI | CTTAAG | 1 cut(s) | 374 |
| BsrDI | GCAATG | 1 cut(s) | 861 |
| BsrFI | RCCGGY | 1 cut(s) | 97 |
| BsrI | ACTGG | 1 cut(s) | 595 |
| BssAI | RCCGGY | 1 cut(s) | 97 |
| BssECI | CCNNGG | 1 cut(s) | 751 |
| BssMI | GATC | 6 cut(s) | 86, 121, 313, 543, 688, 1075 |
| BssNI | GRCGYC | 1 cut(s) | 1001 |
| BssSI | CACGAG | 1 cut(s) | 210 |
| Bst2BI | CACGAG | 1 cut(s) | 210 |
| Bst4CI | ACNGT | 6 cut(s) | 176, 264, 363, 424, 904, 1108 |
| BstACI | GRCGYC | 1 cut(s) | 1001 |
| BstAFI | CTTAAG | 1 cut(s) | 374 |
| BstBAI | YACGTR | 2 cut(s) | 701, 719 |
| BstC8I | GCNNGC | 3 cut(s) | 48, 99, 912 |
| BstDEI | CTNAG | 3 cut(s) | 135, 821, 1046 |
| BstDSI | CCRYGG | 1 cut(s) | 751 |
| BstF5I | GGATG | 2 cut(s) | 22, 373 |
| BstH2I | RGCGCY | 1 cut(s) | 104 |
| BstHHI | GCGC | 2 cut(s) | 103, 492 |
| BstKTI | GATC | 6 cut(s) | 89, 124, 316, 546, 691, 1078 |
| BstMAI | GTCTC | 2 cut(s) | 207, 602 |
| BstMBI | GATC | 6 cut(s) | 86, 121, 313, 543, 688, 1075 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 103, 206, 756 |
| BstNSI | RCATGY | 1 cut(s) | 487 |
| BstSFI | CTRYAG | 1 cut(s) | 867 |
| BstSLI | GKGCMC | 2 cut(s) | 34, 819 |
| BstV1I | GCAGC | 3 cut(s) | 55, 90, 937 |
| BstV2I | GAAGAC | 2 cut(s) | 353, 557 |
| BsuRI | GGCC | 4 cut(s) | 750, 759, 785, 989 |
| BtgI | CCRYGG | 1 cut(s) | 751 |
| BtrI | CACGTC | 1 cut(s) | 683 |
| BtsCI | GGATG | 2 cut(s) | 22, 373 |
| BtsIMutI | CAGTG | 2 cut(s) | 240, 434 |
| Cac8I | GCNNGC | 3 cut(s) | 48, 99, 912 |
| CciI | TCATGA | 1 cut(s) | 397 |
| CfoI | GCGC | 2 cut(s) | 103, 492 |
| Cfr10I | RCCGGY | 1 cut(s) | 97 |
| Cfr13I | GGNCC | 5 cut(s) | 151, 260, 748, 758, 784 |
| Csp6I | GTAC | 2 cut(s) | 169, 894 |
| CviAII | CATG | 6 cut(s) | 398, 484, 731, 796, 863, 991 |
| CviQI | GTAC | 2 cut(s) | 169, 894 |
| DdeI | CTNAG | 3 cut(s) | 135, 821, 1046 |
| DpnI | GATC | 6 cut(s) | 88, 123, 315, 545, 690, 1077 |
| DpnII | GATC | 6 cut(s) | 86, 121, 313, 543, 688, 1075 |
| DraI | TTTAAA | 1 cut(s) | 507 |
| DraIII | CACNNNGTG | 1 cut(s) | 719 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 735, 1000 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 735, 1000 |
| Eco47I | GGWCC | 2 cut(s) | 151, 260 |
| Eco57I | CTGAAG | 4 cut(s) | 323, 558, 645, 815 |
| Eco72I | CACGTG | 2 cut(s) | 701, 719 |
| EcoO109I | RGGNCCY | 1 cut(s) | 758 |
| FaeI | CATG | 6 cut(s) | 401, 487, 734, 799, 866, 994 |
| FaqI | GGGAC | 3 cut(s) | 66, 393, 741 |
| FatI | CATG | 6 cut(s) | 397, 483, 730, 795, 862, 990 |
| FauI | CCCGC | 1 cut(s) | 75 |
| Fnu4HI | GCNGC | 3 cut(s) | 44, 104, 926 |
| FokI | GGATG | 2 cut(s) | 9, 380 |
| Fsp4HI | GCNGC | 3 cut(s) | 44, 104, 926 |
| FspBI | CTAG | 3 cut(s) | 318, 587, 788 |
| GlaI | GCGC | 2 cut(s) | 102, 491 |
| GluI | GCNGC | 3 cut(s) | 44, 104, 926 |
| GsaI | CCCAGC | 1 cut(s) | 331 |
| GsuI | CTGGAG | 1 cut(s) | 626 |
| HaeII | RGCGCY | 1 cut(s) | 104 |
| HaeIII | GGCC | 4 cut(s) | 750, 759, 785, 989 |
| HapII | CCGG | 1 cut(s) | 98 |
| HhaI | GCGC | 2 cut(s) | 103, 492 |
| Hin1I | GRCGYC | 1 cut(s) | 1001 |
| Hin1II | CATG | 6 cut(s) | 401, 487, 734, 799, 866, 994 |
| Hin6I | GCGC | 2 cut(s) | 101, 490 |
| HinP1I | GCGC | 2 cut(s) | 101, 490 |
| HincII | GTYRAC | 2 cut(s) | 1005, 1052 |
| HindII | GTYRAC | 2 cut(s) | 1005, 1052 |
| HinfI | GANTC | 4 cut(s) | 92, 553, 878, 949 |
| HpaII | CCGG | 1 cut(s) | 98 |
| HphI | GGTGA | 1 cut(s) | 286 |
| Hpy166II | GTNNAC | 3 cut(s) | 653, 1005, 1052 |
| Hpy188I | TCNGA | 3 cut(s) | 91, 187, 268 |
| Hpy188III | TCNNGA | 4 cut(s) | 398, 547, 623, 740 |
| Hpy8I | GTNNAC | 3 cut(s) | 653, 1005, 1052 |
| HpyAV | CCTTC | 6 cut(s) | 61, 81, 347, 839, 976, 1108 |
| HpyCH4III | ACNGT | 6 cut(s) | 176, 264, 363, 424, 904, 1108 |
| HpyCH4IV | ACGT | 6 cut(s) | 382, 502, 682, 700, 718, 1001 |
| HpyCH4V | TGCA | 5 cut(s) | 62, 668, 713, 810, 1018 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 103, 206, 756 |
| HpyF3I | CTNAG | 3 cut(s) | 135, 821, 1046 |
| HpySE526I | ACGT | 6 cut(s) | 382, 502, 682, 700, 718, 1001 |
| Hsp92I | GRCGYC | 1 cut(s) | 1001 |
| Hsp92II | CATG | 6 cut(s) | 401, 487, 734, 799, 866, 994 |
| HspAI | GCGC | 2 cut(s) | 101, 490 |
| KroI | GCCGGC | 1 cut(s) | 97 |
| KroNI | GCCGGC | 1 cut(s) | 99 |
| Kzo9I | GATC | 6 cut(s) | 86, 121, 313, 543, 688, 1075 |
| LmnI | GCTCC | 1 cut(s) | 414 |
| Lsp1109I | GCAGC | 3 cut(s) | 55, 90, 937 |
| LweI | GCATC | 2 cut(s) | 358, 1047 |
| MaeI | CTAG | 3 cut(s) | 318, 587, 788 |
| MaeII | ACGT | 6 cut(s) | 382, 502, 682, 700, 718, 1001 |
| MaeIII | GTNAC | 1 cut(s) | 701 |
| MalI | GATC | 6 cut(s) | 88, 123, 315, 545, 690, 1077 |
| MboI | GATC | 6 cut(s) | 86, 121, 313, 543, 688, 1075 |
| MboII | GAAGA | 4 cut(s) | 358, 545, 562, 991 |
| MfeI | CAATTG | 1 cut(s) | 1013 |
| MhlI | GDGCHC | 2 cut(s) | 34, 819 |
| MluCI | AATT | 6 cut(s) | 508, 579, 618, 631, 930, 1013 |
| MlyI | GAGTC | 4 cut(s) | 101, 547, 887, 958 |
| MmeI | TCCRAC | 2 cut(s) | 149, 658 |
| MnlI | CCTC | 9 cut(s) | 117, 294, 671, 749, 771, 932, 957, 979, 1018 |
| MreI | CGCCGGCG | 1 cut(s) | 97 |
| MroNI | GCCGGC | 1 cut(s) | 97 |
| MroXI | GAANNNNTTC | 1 cut(s) | 336 |
| MseI | TTAA | 4 cut(s) | 290, 375, 506, 1025 |
| MslI | CAYNNNNRTG | 1 cut(s) | 27 |
| MspCI | CTTAAG | 1 cut(s) | 374 |
| MspI | CCGG | 1 cut(s) | 98 |
| MunI | CAATTG | 1 cut(s) | 1013 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 103, 206, 756 |
| NaeI | GCCGGC | 1 cut(s) | 99 |
| NdeII | GATC | 6 cut(s) | 86, 121, 313, 543, 688, 1075 |
| NgoMIV | GCCGGC | 1 cut(s) | 97 |
| NlaIII | CATG | 6 cut(s) | 401, 487, 734, 799, 866, 994 |
| NlaIV | GGNNCC | 2 cut(s) | 153, 818 |
| NmuCI | GTSAC | 1 cut(s) | 701 |
| NspI | RCATGY | 1 cut(s) | 487 |
| PagI | TCATGA | 1 cut(s) | 397 |
| PciI | ACATGT | 1 cut(s) | 483 |
| PdiI | GCCGGC | 1 cut(s) | 99 |
| PdmI | GAANNNNTTC | 1 cut(s) | 336 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 771 |
| PkrI | GCNGC | 3 cut(s) | 45, 105, 927 |
| PleI | GAGTC | 4 cut(s) | 100, 547, 886, 957 |
| PmaCI | CACGTG | 2 cut(s) | 701, 719 |
| PmlI | CACGTG | 2 cut(s) | 701, 719 |
| PpsI | GAGTC | 4 cut(s) | 100, 547, 886, 957 |
| Ppu21I | YACGTR | 2 cut(s) | 701, 719 |
| PscI | ACATGT | 1 cut(s) | 483 |
| PspCI | CACGTG | 2 cut(s) | 701, 719 |
| PspFI | CCCAGC | 1 cut(s) | 327 |
| PspN4I | GGNNCC | 2 cut(s) | 153, 818 |
| PspPI | GGNCC | 5 cut(s) | 151, 260, 748, 758, 784 |
| RsaI | GTAC | 2 cut(s) | 170, 895 |
| RsaNI | GTAC | 2 cut(s) | 169, 894 |
| RseI | CAYNNNNRTG | 1 cut(s) | 27 |
| SaqAI | TTAA | 4 cut(s) | 290, 375, 506, 1025 |
| SatI | GCNGC | 3 cut(s) | 44, 104, 926 |
| Sau3AI | GATC | 6 cut(s) | 86, 121, 313, 543, 688, 1075 |
| Sau96I | GGNCC | 5 cut(s) | 151, 260, 748, 758, 784 |
| SchI | GAGTC | 4 cut(s) | 101, 547, 887, 958 |
| SduI | GDGCHC | 2 cut(s) | 34, 819 |
| SfaNI | GCATC | 2 cut(s) | 358, 1047 |
| SfcI | CTRYAG | 1 cut(s) | 867 |
| SfiI | GGCCNNNNNGGCC | 1 cut(s) | 756 |
| SgrAI | CRCCGGYG | 1 cut(s) | 97 |
| SinI | GGWCC | 2 cut(s) | 151, 260 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 27 |
| SmlI | CTYRAG | 2 cut(s) | 164, 374 |
| SmoI | CTYRAG | 2 cut(s) | 164, 374 |
| Sse9I | AATT | 6 cut(s) | 508, 579, 618, 631, 930, 1013 |
| SsiI | CCGC | 3 cut(s) | 41, 68, 442 |
| SspMI | CTAG | 3 cut(s) | 318, 587, 788 |
| TaaI | ACNGT | 6 cut(s) | 176, 264, 363, 424, 904, 1108 |
| TaiI | ACGT | 6 cut(s) | 385, 505, 685, 703, 721, 1004 |
| TaqI | TCGA | 1 cut(s) | 130 |
| TasI | AATT | 6 cut(s) | 508, 579, 618, 631, 930, 1013 |
| Tru1I | TTAA | 4 cut(s) | 290, 375, 506, 1025 |
| Tru9I | TTAA | 4 cut(s) | 290, 375, 506, 1025 |
| TscAI | CASTG | 2 cut(s) | 247, 434 |
| TseFI | GTSAC | 1 cut(s) | 701 |
| TseI | GCWGC | 3 cut(s) | 43, 103, 925 |
| Tsp45I | GTSAC | 1 cut(s) | 701 |
| TspDTI | ATGAA | 4 cut(s) | 386, 450, 537, 872 |
| TspGWI | ACGGA | 1 cut(s) | 174 |
| TspRI | CASTG | 2 cut(s) | 247, 434 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 771 |
| Vha464I | CTTAAG | 1 cut(s) | 374 |
| VpaK11BI | GGWCC | 2 cut(s) | 151, 260 |
| XapI | RAATTY | 2 cut(s) | 508, 618 |
| XceI | RCATGY | 1 cut(s) | 487 |
| XmnI | GAANNNNTTC | 1 cut(s) | 336 |
| XspI | CTAG | 3 cut(s) | 318, 587, 788 |
| ZraI | GACGTC | 1 cut(s) | 1002 |