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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 2 cut(s) | 684, 911 |
| AatII | GACGTC | 1 cut(s) | 915 |
| AccB1I | GGYRCC | 1 cut(s) | 727 |
| AclWI | GGATC | 4 cut(s) | 2, 185, 382, 632 |
| AcsI | RAATTY | 3 cut(s) | 23, 352, 567 |
| AcuI | CTGAAG | 3 cut(s) | 396, 402, 726 |
| AcvI | CACGTG | 2 cut(s) | 650, 668 |
| AcyI | GRCGYC | 1 cut(s) | 912 |
| AdeI | CACNNNGTG | 1 cut(s) | 668 |
| AfaI | GTAC | 3 cut(s) | 56, 720, 806 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 64, 273 |
| AflII | CTTAAG | 1 cut(s) | 218 |
| AgsI | TTSAA | 4 cut(s) | 23, 319, 481, 535 |
| AjiI | CACGTC | 2 cut(s) | 347, 632 |
| AluBI | AGCT | 1 cut(s) | 487 |
| AluI | AGCT | 1 cut(s) | 487 |
| AlwI | GGATC | 4 cut(s) | 2, 185, 382, 632 |
| AoxI | GGCC | 4 cut(s) | 548, 697, 706, 898 |
| ApeKI | GCWGC | 1 cut(s) | 836 |
| ApoI | RAATTY | 3 cut(s) | 23, 352, 567 |
| AspS9I | GGNCC | 3 cut(s) | 137, 697, 707 |
| AsuC2I | CCSGG | 1 cut(s) | 547 |
| AsuHPI | GGTGA | 2 cut(s) | 163, 611 |
| AvaII | GGWCC | 1 cut(s) | 137 |
| AxyI | CCTNAGG | 1 cut(s) | 573 |
| BaeGI | GKGCMC | 1 cut(s) | 730 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 38, 71 |
| BanI | GGYRCC | 1 cut(s) | 727 |
| BbrPI | CACGTG | 2 cut(s) | 650, 668 |
| BbsI | GAAGAC | 1 cut(s) | 401 |
| BbvI | GCAGC | 1 cut(s) | 848 |
| BccI | CCATC | 1 cut(s) | 19 |
| BceAI | ACGGC | 1 cut(s) | 684 |
| BclI | TGATCA | 1 cut(s) | 489 |
| BcnI | CCSGG | 1 cut(s) | 547 |
| BfaI | CTAG | 2 cut(s) | 195, 431 |
| BfmI | CTRYAG | 1 cut(s) | 778 |
| BfrI | CTTAAG | 1 cut(s) | 218 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 92, 705 |
| BisI | GCNGC | 1 cut(s) | 837 |
| BlsI | GCNGC | 1 cut(s) | 838 |
| Bme1390I | CCNGG | 1 cut(s) | 547 |
| Bme18I | GGWCC | 1 cut(s) | 137 |
| BmgBI | CACGTC | 2 cut(s) | 347, 632 |
| BmgT120I | GGNCC | 3 cut(s) | 137, 697, 707 |
| BmiI | GGNNCC | 1 cut(s) | 729 |
| BmrFI | CCNGG | 1 cut(s) | 547 |
| BmsI | GCATC | 1 cut(s) | 202 |
| BpiI | GAAGAC | 1 cut(s) | 401 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 866, 898 |
| BpmI | CTGGAG | 1 cut(s) | 470 |
| BpuEI | CTTGAG | 1 cut(s) | 71 |
| BpuMI | CCSGG | 1 cut(s) | 547 |
| BsaAI | YACGTR | 2 cut(s) | 650, 668 |
| BsaHI | GRCGYC | 1 cut(s) | 912 |
| BsaJI | CCNNGG | 1 cut(s) | 700 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 64, 273 |
| Bse1I | ACTGG | 1 cut(s) | 439 |
| Bse21I | CCTNAGG | 1 cut(s) | 573 |
| Bse3DI | GCAATG | 2 cut(s) | 248, 772 |
| BseDI | CCNNGG | 1 cut(s) | 700 |
| BseGI | GGATG | 1 cut(s) | 217 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 64, 273 |
| BseMI | GCAATG | 2 cut(s) | 248, 772 |
| BseMII | CTCAG | 5 cut(s) | 54, 167, 501, 564, 971 |
| BseNI | ACTGG | 1 cut(s) | 439 |
| BseSI | GKGCMC | 1 cut(s) | 730 |
| BseXI | GCAGC | 1 cut(s) | 848 |
| BshFI | GGCC | 4 cut(s) | 550, 699, 708, 900 |
| BshNI | GGYRCC | 1 cut(s) | 727 |
| BsiSI | CCGG | 1 cut(s) | 547 |
| BslFI | GGGAC | 3 cut(s) | 237, 571, 690 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 64, 273 |
| BsmFI | GGGAC | 3 cut(s) | 237, 571, 690 |
| BsnI | GGCC | 4 cut(s) | 550, 699, 708, 900 |
| Bsp1286I | GDGCHC | 1 cut(s) | 730 |
| Bsp1407I | TGTACA | 1 cut(s) | 718 |
| Bsp143I | GATC | 5 cut(s) | 7, 190, 387, 489, 637 |
| BspANI | GGCC | 4 cut(s) | 550, 699, 708, 900 |
| BspCNI | CTCAG | 5 cut(s) | 53, 168, 502, 565, 970 |
| BspHI | TCATGA | 2 cut(s) | 241, 688 |
| BspLI | GGNNCC | 1 cut(s) | 729 |
| BspPI | GGATC | 4 cut(s) | 2, 185, 382, 632 |
| BspT107I | GGYRCC | 1 cut(s) | 727 |
| BspTI | CTTAAG | 1 cut(s) | 218 |
| BsrDI | GCAATG | 2 cut(s) | 248, 772 |
| BsrGI | TGTACA | 1 cut(s) | 718 |
| BsrI | ACTGG | 1 cut(s) | 439 |
| BssECI | CCNNGG | 1 cut(s) | 700 |
| BssMI | GATC | 5 cut(s) | 7, 190, 387, 489, 637 |
| BssNI | GRCGYC | 1 cut(s) | 912 |
| Bst4CI | ACNGT | 5 cut(s) | 62, 141, 207, 268, 815 |
| BstACI | GRCGYC | 1 cut(s) | 912 |
| BstAFI | CTTAAG | 1 cut(s) | 218 |
| BstAUI | TGTACA | 1 cut(s) | 718 |
| BstBAI | YACGTR | 2 cut(s) | 650, 668 |
| BstC8I | GCNNGC | 2 cut(s) | 823, 880 |
| BstDEI | CTNAG | 6 cut(s) | 40, 176, 510, 573, 732, 957 |
| BstDSI | CCRYGG | 1 cut(s) | 700 |
| BstF5I | GGATG | 1 cut(s) | 217 |
| BstKTI | GATC | 5 cut(s) | 10, 193, 390, 492, 640 |
| BstMBI | GATC | 5 cut(s) | 7, 190, 387, 489, 637 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 92, 705, 875 |
| BstSCI | CCNGG | 1 cut(s) | 545 |
| BstSFI | CTRYAG | 1 cut(s) | 778 |
| BstSLI | GKGCMC | 1 cut(s) | 730 |
| BstV1I | GCAGC | 1 cut(s) | 848 |
| BstV2I | GAAGAC | 1 cut(s) | 401 |
| Bsu36I | CCTNAGG | 1 cut(s) | 573 |
| BsuRI | GGCC | 4 cut(s) | 550, 699, 708, 900 |
| BtgI | CCRYGG | 1 cut(s) | 700 |
| BtrI | CACGTC | 2 cut(s) | 347, 632 |
| BtsCI | GGATG | 1 cut(s) | 217 |
| BtsI | GCAGTG | 1 cut(s) | 105 |
| BtsIMutI | CAGTG | 3 cut(s) | 105, 278, 372 |
| Cac8I | GCNNGC | 2 cut(s) | 823, 880 |
| CciI | TCATGA | 2 cut(s) | 241, 688 |
| Cfr13I | GGNCC | 3 cut(s) | 137, 697, 707 |
| Csp6I | GTAC | 3 cut(s) | 55, 719, 805 |
| CviAII | CATG | 5 cut(s) | 242, 680, 689, 774, 902 |
| CviQI | GTAC | 3 cut(s) | 55, 719, 805 |
| DdeI | CTNAG | 6 cut(s) | 40, 176, 510, 573, 732, 957 |
| DpnI | GATC | 5 cut(s) | 9, 192, 389, 491, 639 |
| DpnII | GATC | 5 cut(s) | 7, 190, 387, 489, 637 |
| DraIII | CACNNNGTG | 1 cut(s) | 668 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 684, 911 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 684, 911 |
| Eco47I | GGWCC | 1 cut(s) | 137 |
| Eco57I | CTGAAG | 3 cut(s) | 396, 402, 726 |
| Eco72I | CACGTG | 2 cut(s) | 650, 668 |
| Eco81I | CCTNAGG | 1 cut(s) | 573 |
| EcoO109I | RGGNCCY | 1 cut(s) | 707 |
| FaeI | CATG | 5 cut(s) | 245, 683, 692, 777, 905 |
| FaqI | GGGAC | 3 cut(s) | 237, 571, 690 |
| FatI | CATG | 5 cut(s) | 241, 679, 688, 773, 901 |
| FbaI | TGATCA | 1 cut(s) | 489 |
| Fnu4HI | GCNGC | 1 cut(s) | 837 |
| FokI | GGATG | 1 cut(s) | 224 |
| Fsp4HI | GCNGC | 1 cut(s) | 837 |
| FspBI | CTAG | 2 cut(s) | 195, 431 |
| GluI | GCNGC | 1 cut(s) | 837 |
| GsuI | CTGGAG | 1 cut(s) | 470 |
| HaeIII | GGCC | 4 cut(s) | 550, 699, 708, 900 |
| HapII | CCGG | 1 cut(s) | 547 |
| Hin1I | GRCGYC | 1 cut(s) | 912 |
| Hin1II | CATG | 5 cut(s) | 245, 683, 692, 777, 905 |
| HincII | GTYRAC | 2 cut(s) | 916, 963 |
| HindII | GTYRAC | 2 cut(s) | 916, 963 |
| HinfI | GANTC | 5 cut(s) | 38, 397, 468, 789, 860 |
| HpaII | CCGG | 1 cut(s) | 547 |
| HphI | GGTGA | 2 cut(s) | 163, 611 |
| Hpy166II | GTNNAC | 3 cut(s) | 602, 916, 963 |
| Hpy188I | TCNGA | 4 cut(s) | 43, 73, 145, 177 |
| Hpy188III | TCNNGA | 5 cut(s) | 15, 242, 391, 572, 689 |
| Hpy8I | GTNNAC | 3 cut(s) | 602, 916, 963 |
| HpyAV | CCTTC | 3 cut(s) | 487, 750, 887 |
| HpyCH4III | ACNGT | 5 cut(s) | 62, 141, 207, 268, 815 |
| HpyCH4IV | ACGT | 6 cut(s) | 226, 346, 631, 649, 667, 912 |
| HpyCH4V | TGCA | 3 cut(s) | 617, 662, 929 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 92, 705, 875 |
| HpyF3I | CTNAG | 6 cut(s) | 40, 176, 510, 573, 732, 957 |
| HpySE526I | ACGT | 6 cut(s) | 226, 346, 631, 649, 667, 912 |
| Hsp92I | GRCGYC | 1 cut(s) | 912 |
| Hsp92II | CATG | 5 cut(s) | 245, 683, 692, 777, 905 |
| Ksp22I | TGATCA | 1 cut(s) | 489 |
| Kzo9I | GATC | 5 cut(s) | 7, 190, 387, 489, 637 |
| LmnI | GCTCC | 2 cut(s) | 258, 339 |
| LpnPI | CCDG | 8 cut(s) | 270, 302, 404, 434, 452, 560, 585, 921 |
| Lsp1109I | GCAGC | 1 cut(s) | 848 |
| LweI | GCATC | 1 cut(s) | 202 |
| MaeI | CTAG | 2 cut(s) | 195, 431 |
| MaeII | ACGT | 6 cut(s) | 226, 346, 631, 649, 667, 912 |
| MalI | GATC | 5 cut(s) | 9, 192, 389, 491, 639 |
| MboI | GATC | 5 cut(s) | 7, 190, 387, 489, 637 |
| MboII | GAAGA | 3 cut(s) | 389, 406, 902 |
| MfeI | CAATTG | 1 cut(s) | 924 |
| MhlI | GDGCHC | 1 cut(s) | 730 |
| MluCI | AATT | 6 cut(s) | 23, 352, 423, 567, 580, 924 |
| MlyI | GAGTC | 4 cut(s) | 32, 391, 798, 869 |
| MmeI | TCCRAC | 1 cut(s) | 607 |
| MseI | TTAA | 3 cut(s) | 167, 219, 936 |
| MspCI | CTTAAG | 1 cut(s) | 218 |
| MspI | CCGG | 1 cut(s) | 547 |
| MspR9I | CCNGG | 1 cut(s) | 547 |
| MunI | CAATTG | 1 cut(s) | 924 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 92, 705, 875 |
| NciI | CCSGG | 1 cut(s) | 547 |
| NdeII | GATC | 5 cut(s) | 7, 190, 387, 489, 637 |
| NlaIII | CATG | 5 cut(s) | 245, 683, 692, 777, 905 |
| NlaIV | GGNNCC | 1 cut(s) | 729 |
| PagI | TCATGA | 2 cut(s) | 241, 688 |
| PfeI | GAWTC | 1 cut(s) | 468 |
| PkrI | GCNGC | 1 cut(s) | 838 |
| PleI | GAGTC | 4 cut(s) | 32, 391, 797, 868 |
| PmaCI | CACGTG | 2 cut(s) | 650, 668 |
| PmlI | CACGTG | 2 cut(s) | 650, 668 |
| PpsI | GAGTC | 4 cut(s) | 32, 391, 797, 868 |
| Ppu21I | YACGTR | 2 cut(s) | 650, 668 |
| PspCI | CACGTG | 2 cut(s) | 650, 668 |
| PspN4I | GGNNCC | 1 cut(s) | 729 |
| PspPI | GGNCC | 3 cut(s) | 137, 697, 707 |
| RsaI | GTAC | 3 cut(s) | 56, 720, 806 |
| RsaNI | GTAC | 3 cut(s) | 55, 719, 805 |
| SaqAI | TTAA | 3 cut(s) | 167, 219, 936 |
| SatI | GCNGC | 1 cut(s) | 837 |
| Sau3AI | GATC | 5 cut(s) | 7, 190, 387, 489, 637 |
| Sau96I | GGNCC | 3 cut(s) | 137, 697, 707 |
| SchI | GAGTC | 4 cut(s) | 32, 391, 798, 869 |
| ScrFI | CCNGG | 1 cut(s) | 547 |
| SduI | GDGCHC | 1 cut(s) | 730 |
| SfaNI | GCATC | 1 cut(s) | 202 |
| SfcI | CTRYAG | 1 cut(s) | 778 |
| SfiI | GGCCNNNNNGGCC | 1 cut(s) | 705 |
| SinI | GGWCC | 1 cut(s) | 137 |
| SmlI | CTYRAG | 2 cut(s) | 50, 218 |
| SmoI | CTYRAG | 2 cut(s) | 50, 218 |
| Sse9I | AATT | 6 cut(s) | 23, 352, 423, 567, 580, 924 |
| SspMI | CTAG | 2 cut(s) | 195, 431 |
| StyD4I | CCNGG | 1 cut(s) | 545 |
| TaaI | ACNGT | 5 cut(s) | 62, 141, 207, 268, 815 |
| TaiI | ACGT | 6 cut(s) | 229, 349, 634, 652, 670, 915 |
| TaqI | TCGA | 1 cut(s) | 16 |
| TasI | AATT | 6 cut(s) | 23, 352, 423, 567, 580, 924 |
| TatI | WGTACW | 1 cut(s) | 718 |
| TfiI | GAWTC | 1 cut(s) | 468 |
| Tru1I | TTAA | 3 cut(s) | 167, 219, 936 |
| Tru9I | TTAA | 3 cut(s) | 167, 219, 936 |
| TscAI | CASTG | 3 cut(s) | 112, 278, 379 |
| TseI | GCWGC | 1 cut(s) | 836 |
| TspDTI | ATGAA | 3 cut(s) | 230, 294, 783 |
| TspGWI | ACGGA | 1 cut(s) | 60 |
| TspRI | CASTG | 3 cut(s) | 112, 278, 379 |
| Vha464I | CTTAAG | 1 cut(s) | 218 |
| VpaK11BI | GGWCC | 1 cut(s) | 137 |
| XapI | RAATTY | 3 cut(s) | 23, 352, 567 |
| XspI | CTAG | 2 cut(s) | 195, 431 |
| ZraI | GACGTC | 1 cut(s) | 913 |