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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 456 |
| AccB1I | GGYRCC | 1 cut(s) | 545 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 225 |
| AciI | CCGC | 1 cut(s) | 537 |
| AclWI | GGATC | 1 cut(s) | 404 |
| AcsI | RAATTY | 1 cut(s) | 339 |
| AcvI | CACGTG | 2 cut(s) | 422, 440 |
| AdeI | CACNNNGTG | 1 cut(s) | 440 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 124, 225 |
| AflII | CTTAAG | 1 cut(s) | 170 |
| AgsI | TTSAA | 3 cut(s) | 88, 137, 307 |
| AjiI | CACGTC | 1 cut(s) | 404 |
| AlwI | GGATC | 1 cut(s) | 404 |
| AoxI | GGCC | 3 cut(s) | 469, 478, 514 |
| ApoI | RAATTY | 1 cut(s) | 339 |
| AspS9I | GGNCC | 4 cut(s) | 56, 469, 479, 515 |
| AsuHPI | GGTGA | 1 cut(s) | 82 |
| AvaII | GGWCC | 1 cut(s) | 56 |
| AxyI | CCTNAGG | 1 cut(s) | 345 |
| BanI | GGYRCC | 1 cut(s) | 545 |
| BbrPI | CACGTG | 2 cut(s) | 422, 440 |
| BccI | CCATC | 3 cut(s) | 32, 47, 497 |
| BceAI | ACGGC | 1 cut(s) | 456 |
| BclI | TGATCA | 1 cut(s) | 261 |
| BfaI | CTAG | 1 cut(s) | 519 |
| BfrI | CTTAAG | 1 cut(s) | 170 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 477, 522 |
| Bme18I | GGWCC | 1 cut(s) | 56 |
| BmgBI | CACGTC | 1 cut(s) | 404 |
| BmgT120I | GGNCC | 4 cut(s) | 56, 469, 479, 515 |
| BmiI | GGNNCC | 1 cut(s) | 547 |
| BmsI | GCATC | 1 cut(s) | 154 |
| BsaAI | YACGTR | 2 cut(s) | 422, 440 |
| BsaJI | CCNNGG | 2 cut(s) | 472, 549 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 124, 225 |
| Bse21I | CCTNAGG | 1 cut(s) | 345 |
| Bse3DI | GCAATG | 1 cut(s) | 200 |
| BseDI | CCNNGG | 2 cut(s) | 472, 549 |
| BseGI | GGATG | 1 cut(s) | 169 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 124, 225 |
| BseMI | GCAATG | 1 cut(s) | 200 |
| BseMII | CTCAG | 3 cut(s) | 273, 336, 511 |
| BseYI | CCCAGC | 1 cut(s) | 123 |
| BshFI | GGCC | 3 cut(s) | 471, 480, 516 |
| BshNI | GGYRCC | 1 cut(s) | 545 |
| BslFI | GGGAC | 3 cut(s) | 189, 343, 462 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 124, 225 |
| BsmFI | GGGAC | 3 cut(s) | 189, 343, 462 |
| BsnI | GGCC | 3 cut(s) | 471, 480, 516 |
| Bsp143I | GATC | 3 cut(s) | 109, 261, 409 |
| BspACI | CCGC | 1 cut(s) | 537 |
| BspANI | GGCC | 3 cut(s) | 471, 480, 516 |
| BspCNI | CTCAG | 3 cut(s) | 274, 337, 510 |
| BspHI | TCATGA | 2 cut(s) | 193, 460 |
| BspLI | GGNNCC | 1 cut(s) | 547 |
| BspPI | GGATC | 1 cut(s) | 404 |
| BspT107I | GGYRCC | 1 cut(s) | 545 |
| BspTI | CTTAAG | 1 cut(s) | 170 |
| BsrDI | GCAATG | 1 cut(s) | 200 |
| BssECI | CCNNGG | 2 cut(s) | 472, 549 |
| BssMI | GATC | 3 cut(s) | 109, 261, 409 |
| Bst4CI | ACNGT | 2 cut(s) | 60, 159 |
| BstAFI | CTTAAG | 1 cut(s) | 170 |
| BstBAI | YACGTR | 2 cut(s) | 422, 440 |
| BstC8I | GCNNGC | 2 cut(s) | 319, 514 |
| BstDEI | CTNAG | 5 cut(s) | 95, 113, 282, 345, 497 |
| BstDSI | CCRYGG | 1 cut(s) | 472 |
| BstF5I | GGATG | 1 cut(s) | 169 |
| BstKTI | GATC | 3 cut(s) | 112, 264, 412 |
| BstMBI | GATC | 3 cut(s) | 109, 261, 409 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 477, 522 |
| Bsu36I | CCTNAGG | 1 cut(s) | 345 |
| BsuRI | GGCC | 3 cut(s) | 471, 480, 516 |
| BtgI | CCRYGG | 1 cut(s) | 472 |
| BtrI | CACGTC | 1 cut(s) | 404 |
| BtsCI | GGATG | 1 cut(s) | 169 |
| BtsI | GCAGTG | 1 cut(s) | 15 |
| BtsIMutI | CAGTG | 2 cut(s) | 15, 230 |
| Cac8I | GCNNGC | 2 cut(s) | 319, 514 |
| CciI | TCATGA | 2 cut(s) | 193, 460 |
| Cfr13I | GGNCC | 4 cut(s) | 56, 469, 479, 515 |
| CviAII | CATG | 5 cut(s) | 194, 452, 461, 532, 561 |
| DdeI | CTNAG | 5 cut(s) | 95, 113, 282, 345, 497 |
| DpnI | GATC | 3 cut(s) | 111, 263, 411 |
| DpnII | GATC | 3 cut(s) | 109, 261, 409 |
| DraIII | CACNNNGTG | 1 cut(s) | 440 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 456 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 456 |
| Eco47I | GGWCC | 1 cut(s) | 56 |
| Eco72I | CACGTG | 2 cut(s) | 422, 440 |
| Eco81I | CCTNAGG | 1 cut(s) | 345 |
| EcoO109I | RGGNCCY | 1 cut(s) | 479 |
| FaeI | CATG | 5 cut(s) | 197, 455, 464, 535, 564 |
| FaqI | GGGAC | 3 cut(s) | 189, 343, 462 |
| FatI | CATG | 5 cut(s) | 193, 451, 460, 531, 560 |
| FbaI | TGATCA | 1 cut(s) | 261 |
| FokI | GGATG | 1 cut(s) | 176 |
| FspBI | CTAG | 1 cut(s) | 519 |
| GsaI | CCCAGC | 1 cut(s) | 127 |
| HaeIII | GGCC | 3 cut(s) | 471, 480, 516 |
| Hin1II | CATG | 5 cut(s) | 197, 455, 464, 535, 564 |
| HphI | GGTGA | 1 cut(s) | 82 |
| Hpy166II | GTNNAC | 1 cut(s) | 374 |
| Hpy188I | TCNGA | 2 cut(s) | 64, 500 |
| Hpy188III | TCNNGA | 3 cut(s) | 194, 344, 461 |
| Hpy8I | GTNNAC | 1 cut(s) | 374 |
| HpyCH4III | ACNGT | 2 cut(s) | 60, 159 |
| HpyCH4IV | ACGT | 4 cut(s) | 178, 403, 421, 439 |
| HpyCH4V | TGCA | 4 cut(s) | 274, 389, 434, 531 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 477, 522 |
| HpyF3I | CTNAG | 5 cut(s) | 95, 113, 282, 345, 497 |
| HpySE526I | ACGT | 4 cut(s) | 178, 403, 421, 439 |
| Hsp92II | CATG | 5 cut(s) | 197, 455, 464, 535, 564 |
| Ksp22I | TGATCA | 1 cut(s) | 261 |
| Kzo9I | GATC | 3 cut(s) | 109, 261, 409 |
| LmnI | GCTCC | 1 cut(s) | 210 |
| LpnPI | CCDG | 5 cut(s) | 109, 222, 331, 357, 498 |
| LweI | GCATC | 1 cut(s) | 154 |
| MaeI | CTAG | 1 cut(s) | 519 |
| MaeII | ACGT | 4 cut(s) | 178, 403, 421, 439 |
| MaeIII | GTNAC | 1 cut(s) | 556 |
| MalI | GATC | 3 cut(s) | 111, 263, 411 |
| MboI | GATC | 3 cut(s) | 109, 261, 409 |
| MboII | GAAGA | 1 cut(s) | 125 |
| MluCI | AATT | 3 cut(s) | 137, 339, 352 |
| MmeI | TCCRAC | 1 cut(s) | 379 |
| MnlI | CCTC | 6 cut(s) | 279, 289, 340, 470, 492, 544 |
| MseI | TTAA | 2 cut(s) | 140, 171 |
| MspCI | CTTAAG | 1 cut(s) | 170 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 477, 522 |
| NdeII | GATC | 3 cut(s) | 109, 261, 409 |
| NlaIII | CATG | 5 cut(s) | 197, 455, 464, 535, 564 |
| NlaIV | GGNNCC | 1 cut(s) | 547 |
| NmuCI | GTSAC | 1 cut(s) | 556 |
| PagI | TCATGA | 2 cut(s) | 193, 460 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 225 |
| PmaCI | CACGTG | 2 cut(s) | 422, 440 |
| PmlI | CACGTG | 2 cut(s) | 422, 440 |
| Ppu21I | YACGTR | 2 cut(s) | 422, 440 |
| PspCI | CACGTG | 2 cut(s) | 422, 440 |
| PspFI | CCCAGC | 1 cut(s) | 123 |
| PspN4I | GGNNCC | 1 cut(s) | 547 |
| PspPI | GGNCC | 4 cut(s) | 56, 469, 479, 515 |
| SaqAI | TTAA | 2 cut(s) | 140, 171 |
| Sau3AI | GATC | 3 cut(s) | 109, 261, 409 |
| Sau96I | GGNCC | 4 cut(s) | 56, 469, 479, 515 |
| SetI | ASST | 9 cut(s) | 72, 181, 270, 300, 373, 406, 424, 442, 555 |
| SfaNI | GCATC | 1 cut(s) | 154 |
| SfiI | GGCCNNNNNGGCC | 1 cut(s) | 477 |
| SinI | GGWCC | 1 cut(s) | 56 |
| SmlI | CTYRAG | 1 cut(s) | 170 |
| SmoI | CTYRAG | 1 cut(s) | 170 |
| Sse9I | AATT | 3 cut(s) | 137, 339, 352 |
| SsiI | CCGC | 1 cut(s) | 537 |
| SspMI | CTAG | 1 cut(s) | 519 |
| TaaI | ACNGT | 2 cut(s) | 60, 159 |
| TaiI | ACGT | 4 cut(s) | 181, 406, 424, 442 |
| TasI | AATT | 3 cut(s) | 137, 339, 352 |
| Tru1I | TTAA | 2 cut(s) | 140, 171 |
| Tru9I | TTAA | 2 cut(s) | 140, 171 |
| TscAI | CASTG | 2 cut(s) | 22, 230 |
| TseFI | GTSAC | 1 cut(s) | 556 |
| Tsp45I | GTSAC | 1 cut(s) | 556 |
| TspDTI | ATGAA | 2 cut(s) | 182, 246 |
| TspRI | CASTG | 2 cut(s) | 22, 230 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 225 |
| Vha464I | CTTAAG | 1 cut(s) | 170 |
| VpaK11BI | GGWCC | 1 cut(s) | 56 |
| XapI | RAATTY | 1 cut(s) | 339 |
| XspI | CTAG | 1 cut(s) | 519 |