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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 2 cut(s) | 726, 1022 |
| AccB1I | GGYRCC | 1 cut(s) | 838 |
| AciI | CCGC | 2 cut(s) | 84, 328 |
| AclWI | GGATC | 3 cut(s) | 2, 194, 424 |
| AcsI | RAATTY | 3 cut(s) | 23, 394, 609 |
| AcuI | CTGAAG | 3 cut(s) | 444, 837, 1068 |
| AcvI | CACGTG | 1 cut(s) | 710 |
| AdeI | CACNNNGTG | 1 cut(s) | 710 |
| AfaI | GTAC | 2 cut(s) | 56, 917 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 64, 214, 758 |
| AflII | CTTAAG | 1 cut(s) | 260 |
| AflIII | ACRYGT | 2 cut(s) | 369, 673 |
| AgsI | TTSAA | 5 cut(s) | 232, 361, 523, 554, 1048 |
| AjiI | CACGTC | 3 cut(s) | 389, 674, 722 |
| AjnI | CCWGG | 2 cut(s) | 730, 751 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 651, 683 |
| Alw26I | GTCTC | 1 cut(s) | 978 |
| AlwI | GGATC | 3 cut(s) | 2, 194, 424 |
| AoxI | GGCC | 3 cut(s) | 760, 769, 805 |
| ApeKI | GCWGC | 1 cut(s) | 947 |
| ApoI | RAATTY | 3 cut(s) | 23, 394, 609 |
| AspLEI | GCGC | 2 cut(s) | 378, 789 |
| AspS9I | GGNCC | 5 cut(s) | 728, 749, 760, 770, 806 |
| AvaII | GGWCC | 2 cut(s) | 728, 749 |
| AxyI | CCTNAGG | 1 cut(s) | 615 |
| BaeGI | GKGCMC | 1 cut(s) | 841 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 38, 71 |
| BanI | GGYRCC | 1 cut(s) | 838 |
| BauI | CACGAG | 1 cut(s) | 690 |
| BbrPI | CACGTG | 1 cut(s) | 710 |
| BbsI | GAAGAC | 1 cut(s) | 239 |
| BbvI | GCAGC | 1 cut(s) | 959 |
| BccI | CCATC | 3 cut(s) | 122, 137, 788 |
| BceAI | ACGGC | 2 cut(s) | 726, 747 |
| BciT130I | CCWGG | 2 cut(s) | 732, 753 |
| BclI | TGATCA | 1 cut(s) | 531 |
| BcoDI | GTCTC | 1 cut(s) | 978 |
| BfaI | CTAG | 3 cut(s) | 204, 473, 810 |
| BfmI | CTRYAG | 1 cut(s) | 889 |
| BfrI | CTTAAG | 1 cut(s) | 260 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 768 |
| BisI | GCNGC | 1 cut(s) | 948 |
| BlsI | GCNGC | 1 cut(s) | 949 |
| Bme1390I | CCNGG | 2 cut(s) | 732, 753 |
| Bme18I | GGWCC | 2 cut(s) | 728, 749 |
| BmgBI | CACGTC | 3 cut(s) | 389, 674, 722 |
| BmgT120I | GGNCC | 5 cut(s) | 728, 749, 760, 770, 806 |
| BmiI | GGNNCC | 2 cut(s) | 729, 840 |
| BmrFI | CCNGG | 2 cut(s) | 732, 753 |
| BmsI | GCATC | 2 cut(s) | 244, 1069 |
| BpiI | GAAGAC | 1 cut(s) | 239 |
| BpmI | CTGGAG | 2 cut(s) | 209, 512 |
| BpuEI | CTTGAG | 2 cut(s) | 71, 960 |
| BsaAI | YACGTR | 1 cut(s) | 710 |
| BsaJI | CCNNGG | 2 cut(s) | 742, 763 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 64, 214, 758 |
| Bse1I | ACTGG | 2 cut(s) | 226, 481 |
| Bse21I | CCTNAGG | 1 cut(s) | 615 |
| Bse3DI | GCAATG | 2 cut(s) | 883, 1018 |
| BseBI | CCWGG | 2 cut(s) | 732, 753 |
| BseDI | CCNNGG | 2 cut(s) | 742, 763 |
| BseGI | GGATG | 3 cut(s) | 259, 679, 1084 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 64, 214, 758 |
| BseMI | GCAATG | 2 cut(s) | 883, 1018 |
| BseMII | CTCAG | 3 cut(s) | 54, 606, 1082 |
| BseNI | ACTGG | 2 cut(s) | 226, 481 |
| BseSI | GKGCMC | 1 cut(s) | 841 |
| BseXI | GCAGC | 1 cut(s) | 959 |
| BseYI | CCCAGC | 1 cut(s) | 213 |
| BshFI | GGCC | 3 cut(s) | 762, 771, 807 |
| BshNI | GGYRCC | 1 cut(s) | 838 |
| BslFI | GGGAC | 3 cut(s) | 279, 613, 732 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 64, 214, 758 |
| BsmAI | GTCTC | 1 cut(s) | 978 |
| BsmFI | GGGAC | 3 cut(s) | 279, 613, 732 |
| BsnI | GGCC | 3 cut(s) | 762, 771, 807 |
| Bsp1286I | GDGCHC | 1 cut(s) | 841 |
| Bsp143I | GATC | 4 cut(s) | 7, 199, 429, 531 |
| BspACI | CCGC | 2 cut(s) | 84, 328 |
| BspANI | GGCC | 3 cut(s) | 762, 771, 807 |
| BspCNI | CTCAG | 3 cut(s) | 53, 607, 1081 |
| BspHI | TCATGA | 1 cut(s) | 283 |
| BspLI | GGNNCC | 2 cut(s) | 729, 840 |
| BspPI | GGATC | 3 cut(s) | 2, 194, 424 |
| BspT107I | GGYRCC | 1 cut(s) | 838 |
| BspTI | CTTAAG | 1 cut(s) | 260 |
| BsrDI | GCAATG | 2 cut(s) | 883, 1018 |
| BsrI | ACTGG | 2 cut(s) | 226, 481 |
| BssECI | CCNNGG | 2 cut(s) | 742, 763 |
| BssMI | GATC | 4 cut(s) | 7, 199, 429, 531 |
| BssSI | CACGAG | 1 cut(s) | 690 |
| Bst2BI | CACGAG | 1 cut(s) | 690 |
| Bst2UI | CCWGG | 2 cut(s) | 732, 753 |
| Bst4CI | ACNGT | 4 cut(s) | 62, 150, 310, 926 |
| BstAFI | CTTAAG | 1 cut(s) | 260 |
| BstBAI | YACGTR | 1 cut(s) | 710 |
| BstC8I | GCNNGC | 3 cut(s) | 332, 805, 934 |
| BstDEI | CTNAG | 4 cut(s) | 40, 615, 843, 1068 |
| BstDSI | CCRYGG | 2 cut(s) | 742, 763 |
| BstF5I | GGATG | 3 cut(s) | 259, 679, 1084 |
| BstHHI | GCGC | 2 cut(s) | 378, 789 |
| BstKTI | GATC | 4 cut(s) | 10, 202, 432, 534 |
| BstMAI | GTCTC | 1 cut(s) | 978 |
| BstMBI | GATC | 4 cut(s) | 7, 199, 429, 531 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 92, 768 |
| BstNI | CCWGG | 2 cut(s) | 732, 753 |
| BstNSI | RCATGY | 1 cut(s) | 373 |
| BstSCI | CCNGG | 2 cut(s) | 730, 751 |
| BstSFI | CTRYAG | 1 cut(s) | 889 |
| BstSLI | GKGCMC | 1 cut(s) | 841 |
| BstV1I | GCAGC | 1 cut(s) | 959 |
| BstV2I | GAAGAC | 1 cut(s) | 239 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 783 |
| Bsu36I | CCTNAGG | 1 cut(s) | 615 |
| BsuRI | GGCC | 3 cut(s) | 762, 771, 807 |
| BtgI | CCRYGG | 2 cut(s) | 742, 763 |
| BtrI | CACGTC | 3 cut(s) | 389, 674, 722 |
| BtsCI | GGATG | 3 cut(s) | 259, 679, 1084 |
| BtsI | GCAGTG | 1 cut(s) | 105 |
| BtsIMutI | CAGTG | 3 cut(s) | 105, 126, 320 |
| Cac8I | GCNNGC | 3 cut(s) | 332, 805, 934 |
| CciI | TCATGA | 1 cut(s) | 283 |
| CfoI | GCGC | 2 cut(s) | 378, 789 |
| Cfr13I | GGNCC | 5 cut(s) | 728, 749, 760, 770, 806 |
| Csp6I | GTAC | 2 cut(s) | 55, 916 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 703, 738 |
| CviAII | CATG | 5 cut(s) | 284, 370, 818, 885, 904 |
| CviQI | GTAC | 2 cut(s) | 55, 916 |
| DdeI | CTNAG | 4 cut(s) | 40, 615, 843, 1068 |
| DpnI | GATC | 4 cut(s) | 9, 201, 431, 533 |
| DpnII | GATC | 4 cut(s) | 7, 199, 429, 531 |
| DraIII | CACNNNGTG | 1 cut(s) | 710 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 726, 1022 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 726, 1022 |
| Eco47I | GGWCC | 2 cut(s) | 728, 749 |
| Eco57I | CTGAAG | 3 cut(s) | 444, 837, 1068 |
| Eco72I | CACGTG | 1 cut(s) | 710 |
| Eco81I | CCTNAGG | 1 cut(s) | 615 |
| EcoO109I | RGGNCCY | 3 cut(s) | 728, 749, 770 |
| EcoRII | CCWGG | 2 cut(s) | 730, 751 |
| FaeI | CATG | 5 cut(s) | 287, 373, 821, 888, 907 |
| FaqI | GGGAC | 3 cut(s) | 279, 613, 732 |
| FatI | CATG | 5 cut(s) | 283, 369, 817, 884, 903 |
| FbaI | TGATCA | 1 cut(s) | 531 |
| Fnu4HI | GCNGC | 1 cut(s) | 948 |
| FokI | GGATG | 3 cut(s) | 266, 666, 1091 |
| Fsp4HI | GCNGC | 1 cut(s) | 948 |
| FspBI | CTAG | 3 cut(s) | 204, 473, 810 |
| GlaI | GCGC | 2 cut(s) | 377, 788 |
| GluI | GCNGC | 1 cut(s) | 948 |
| GsaI | CCCAGC | 1 cut(s) | 217 |
| GsuI | CTGGAG | 2 cut(s) | 209, 512 |
| HaeIII | GGCC | 3 cut(s) | 762, 771, 807 |
| HhaI | GCGC | 2 cut(s) | 378, 789 |
| Hin1II | CATG | 5 cut(s) | 287, 373, 821, 888, 907 |
| Hin6I | GCGC | 2 cut(s) | 376, 787 |
| HinP1I | GCGC | 2 cut(s) | 376, 787 |
| HincII | GTYRAC | 1 cut(s) | 1027 |
| HindII | GTYRAC | 1 cut(s) | 1027 |
| HinfI | GANTC | 5 cut(s) | 38, 439, 510, 900, 971 |
| Hpy166II | GTNNAC | 1 cut(s) | 1027 |
| Hpy188I | TCNGA | 4 cut(s) | 43, 73, 154, 1087 |
| Hpy188III | TCNNGA | 3 cut(s) | 284, 614, 977 |
| Hpy8I | GTNNAC | 1 cut(s) | 1027 |
| HpyAV | CCTTC | 4 cut(s) | 38, 529, 861, 998 |
| HpyCH4III | ACNGT | 4 cut(s) | 62, 150, 310, 926 |
| HpyCH4IV | ACGT | 5 cut(s) | 268, 388, 673, 709, 721 |
| HpyCH4V | TGCA | 4 cut(s) | 544, 704, 832, 1040 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 92, 768 |
| HpyF3I | CTNAG | 4 cut(s) | 40, 615, 843, 1068 |
| HpySE526I | ACGT | 5 cut(s) | 268, 388, 673, 709, 721 |
| Hsp92II | CATG | 5 cut(s) | 287, 373, 821, 888, 907 |
| HspAI | GCGC | 2 cut(s) | 376, 787 |
| Ksp22I | TGATCA | 1 cut(s) | 531 |
| Kzo9I | GATC | 4 cut(s) | 7, 199, 429, 531 |
| LmnI | GCTCC | 1 cut(s) | 300 |
| Lsp1109I | GCAGC | 1 cut(s) | 959 |
| LweI | GCATC | 2 cut(s) | 244, 1069 |
| MaeI | CTAG | 3 cut(s) | 204, 473, 810 |
| MaeII | ACGT | 5 cut(s) | 268, 388, 673, 709, 721 |
| MalI | GATC | 4 cut(s) | 9, 201, 431, 533 |
| MboI | GATC | 4 cut(s) | 7, 199, 429, 531 |
| MboII | GAAGA | 3 cut(s) | 244, 431, 1013 |
| MfeI | CAATTG | 1 cut(s) | 1035 |
| MhlI | GDGCHC | 1 cut(s) | 841 |
| MluCI | AATT | 9 cut(s) | 23, 245, 302, 394, 465, 609, 622, 952, 1035 |
| MlyI | GAGTC | 4 cut(s) | 32, 433, 909, 980 |
| MmeI | TCCRAC | 2 cut(s) | 35, 649 |
| MseI | TTAA | 3 cut(s) | 176, 185, 261 |
| MspCI | CTTAAG | 1 cut(s) | 260 |
| MspR9I | CCNGG | 2 cut(s) | 732, 753 |
| MunI | CAATTG | 1 cut(s) | 1035 |
| MvaI | CCWGG | 2 cut(s) | 732, 753 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 92, 768 |
| NdeII | GATC | 4 cut(s) | 7, 199, 429, 531 |
| NlaIII | CATG | 5 cut(s) | 287, 373, 821, 888, 907 |
| NlaIV | GGNNCC | 2 cut(s) | 729, 840 |
| NspI | RCATGY | 1 cut(s) | 373 |
| PagI | TCATGA | 1 cut(s) | 283 |
| PciI | ACATGT | 1 cut(s) | 369 |
| PfeI | GAWTC | 1 cut(s) | 510 |
| PkrI | GCNGC | 1 cut(s) | 949 |
| PleI | GAGTC | 4 cut(s) | 32, 433, 908, 979 |
| PmaCI | CACGTG | 1 cut(s) | 710 |
| PmlI | CACGTG | 1 cut(s) | 710 |
| PpsI | GAGTC | 4 cut(s) | 32, 433, 908, 979 |
| Ppu21I | YACGTR | 1 cut(s) | 710 |
| PpuMI | RGGWCCY | 2 cut(s) | 728, 749 |
| PscI | ACATGT | 1 cut(s) | 369 |
| Psp5II | RGGWCCY | 2 cut(s) | 728, 749 |
| Psp6I | CCWGG | 2 cut(s) | 730, 751 |
| PspCI | CACGTG | 1 cut(s) | 710 |
| PspFI | CCCAGC | 1 cut(s) | 213 |
| PspGI | CCWGG | 2 cut(s) | 730, 751 |
| PspN4I | GGNNCC | 2 cut(s) | 729, 840 |
| PspPI | GGNCC | 5 cut(s) | 728, 749, 760, 770, 806 |
| PspPPI | RGGWCCY | 2 cut(s) | 728, 749 |
| RsaI | GTAC | 2 cut(s) | 56, 917 |
| RsaNI | GTAC | 2 cut(s) | 55, 916 |
| SaqAI | TTAA | 3 cut(s) | 176, 185, 261 |
| SatI | GCNGC | 1 cut(s) | 948 |
| Sau3AI | GATC | 4 cut(s) | 7, 199, 429, 531 |
| Sau96I | GGNCC | 5 cut(s) | 728, 749, 760, 770, 806 |
| SchI | GAGTC | 4 cut(s) | 32, 433, 909, 980 |
| ScrFI | CCNGG | 2 cut(s) | 732, 753 |
| SduI | GDGCHC | 1 cut(s) | 841 |
| SfaNI | GCATC | 2 cut(s) | 244, 1069 |
| SfcI | CTRYAG | 1 cut(s) | 889 |
| SfiI | GGCCNNNNNGGCC | 1 cut(s) | 768 |
| SinI | GGWCC | 2 cut(s) | 728, 749 |
| SmlI | CTYRAG | 3 cut(s) | 50, 260, 975 |
| SmoI | CTYRAG | 3 cut(s) | 50, 260, 975 |
| Sse9I | AATT | 9 cut(s) | 23, 245, 302, 394, 465, 609, 622, 952, 1035 |
| SsiI | CCGC | 2 cut(s) | 84, 328 |
| SspMI | CTAG | 3 cut(s) | 204, 473, 810 |
| StyD4I | CCNGG | 2 cut(s) | 730, 751 |
| TaaI | ACNGT | 4 cut(s) | 62, 150, 310, 926 |
| TaiI | ACGT | 5 cut(s) | 271, 391, 676, 712, 724 |
| TaqI | TCGA | 1 cut(s) | 16 |
| TasI | AATT | 9 cut(s) | 23, 245, 302, 394, 465, 609, 622, 952, 1035 |
| TfiI | GAWTC | 1 cut(s) | 510 |
| Tru1I | TTAA | 3 cut(s) | 176, 185, 261 |
| Tru9I | TTAA | 3 cut(s) | 176, 185, 261 |
| TscAI | CASTG | 3 cut(s) | 112, 133, 320 |
| TseI | GCWGC | 1 cut(s) | 947 |
| TspDTI | ATGAA | 6 cut(s) | 272, 336, 579, 668, 672, 894 |
| TspRI | CASTG | 3 cut(s) | 112, 133, 320 |
| Vha464I | CTTAAG | 1 cut(s) | 260 |
| VpaK11BI | GGWCC | 2 cut(s) | 728, 749 |
| XapI | RAATTY | 3 cut(s) | 23, 394, 609 |
| XceI | RCATGY | 1 cut(s) | 373 |
| XspI | CTAG | 3 cut(s) | 204, 473, 810 |