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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 2 cut(s) | 300, 605 |
| AccIII | TCCGGA | 1 cut(s) | 205 |
| AciI | CCGC | 1 cut(s) | 313 |
| AclWI | GGATC | 3 cut(s) | 74, 197, 548 |
| AcoI | YGGCCR | 1 cut(s) | 36 |
| AcvI | CACGTG | 1 cut(s) | 566 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 300, 605 |
| AflII | CTTAAG | 1 cut(s) | 244 |
| AgsI | TTSAA | 2 cut(s) | 397, 451 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 581 |
| AjiI | CACGTC | 2 cut(s) | 548, 578 |
| AjnI | CCWGG | 1 cut(s) | 461 |
| AluBI | AGCT | 1 cut(s) | 403 |
| AluI | AGCT | 1 cut(s) | 403 |
| AlwI | GGATC | 3 cut(s) | 74, 197, 548 |
| Ama87I | CYCGRG | 1 cut(s) | 488 |
| Aor13HI | TCCGGA | 1 cut(s) | 205 |
| AoxI | GGCC | 4 cut(s) | 36, 464, 591, 627 |
| AspLEI | GCGC | 1 cut(s) | 611 |
| AspS9I | GGNCC | 4 cut(s) | 250, 465, 592, 628 |
| AvaI | CYCGRG | 1 cut(s) | 488 |
| AvaII | GGWCC | 1 cut(s) | 250 |
| BalI | TGGCCA | 1 cut(s) | 38 |
| BbrPI | CACGTG | 1 cut(s) | 566 |
| BccI | CCATC | 2 cut(s) | 203, 610 |
| BciT130I | CCWGG | 1 cut(s) | 463 |
| BclI | TGATCA | 2 cut(s) | 405, 636 |
| BfaI | CTAG | 3 cut(s) | 347, 632, 655 |
| BfrI | CTTAAG | 1 cut(s) | 244 |
| Bme1390I | CCNGG | 1 cut(s) | 463 |
| Bme18I | GGWCC | 1 cut(s) | 250 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 581 |
| BmeT110I | CYCGRG | 1 cut(s) | 488 |
| BmgBI | CACGTC | 2 cut(s) | 548, 578 |
| BmgT120I | GGNCC | 4 cut(s) | 250, 465, 592, 628 |
| BmiI | GGNNCC | 1 cut(s) | 251 |
| BmrFI | CCNGG | 1 cut(s) | 463 |
| BmrI | ACTGGG | 1 cut(s) | 480 |
| BmsI | GCATC | 2 cut(s) | 37, 228 |
| BmuI | ACTGGG | 1 cut(s) | 480 |
| BsaAI | YACGTR | 1 cut(s) | 566 |
| BsaJI | CCNNGG | 1 cut(s) | 489 |
| BsaWI | WCCGGW | 1 cut(s) | 205 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 300, 605 |
| Bse1I | ACTGG | 2 cut(s) | 355, 475 |
| Bse3DI | GCAATG | 1 cut(s) | 125 |
| BseAI | TCCGGA | 1 cut(s) | 205 |
| BseBI | CCWGG | 1 cut(s) | 463 |
| BseDI | CCNNGG | 1 cut(s) | 489 |
| BseGI | GGATG | 3 cut(s) | 52, 193, 214 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 300, 605 |
| BseMI | GCAATG | 1 cut(s) | 125 |
| BseMII | CTCAG | 1 cut(s) | 417 |
| BseNI | ACTGG | 2 cut(s) | 355, 475 |
| BshFI | GGCC | 4 cut(s) | 38, 466, 593, 629 |
| BsiHKCI | CYCGRG | 1 cut(s) | 488 |
| BsiSI | CCGG | 1 cut(s) | 206 |
| BslFI | GGGAC | 4 cut(s) | 153, 263, 487, 588 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 300, 605 |
| BsmFI | GGGAC | 4 cut(s) | 153, 263, 487, 588 |
| BsnI | GGCC | 4 cut(s) | 38, 466, 593, 629 |
| BsoBI | CYCGRG | 1 cut(s) | 488 |
| Bsp13I | TCCGGA | 1 cut(s) | 205 |
| Bsp143I | GATC | 6 cut(s) | 19, 79, 202, 405, 553, 636 |
| BspACI | CCGC | 1 cut(s) | 313 |
| BspANI | GGCC | 4 cut(s) | 38, 466, 593, 629 |
| BspCNI | CTCAG | 1 cut(s) | 418 |
| BspEI | TCCGGA | 1 cut(s) | 205 |
| BspLI | GGNNCC | 1 cut(s) | 251 |
| BspPI | GGATC | 3 cut(s) | 74, 197, 548 |
| BspTI | CTTAAG | 1 cut(s) | 244 |
| BsrDI | GCAATG | 1 cut(s) | 125 |
| BsrI | ACTGG | 2 cut(s) | 355, 475 |
| BssECI | CCNNGG | 1 cut(s) | 489 |
| BssMI | GATC | 6 cut(s) | 19, 79, 202, 405, 553, 636 |
| Bst2UI | CCWGG | 1 cut(s) | 463 |
| Bst4CI | ACNGT | 1 cut(s) | 233 |
| BstAFI | CTTAAG | 1 cut(s) | 244 |
| BstBAI | YACGTR | 1 cut(s) | 566 |
| BstC8I | GCNNGC | 2 cut(s) | 317, 627 |
| BstDEI | CTNAG | 1 cut(s) | 426 |
| BstF5I | GGATG | 3 cut(s) | 52, 193, 214 |
| BstHHI | GCGC | 1 cut(s) | 611 |
| BstKTI | GATC | 6 cut(s) | 22, 82, 205, 408, 556, 639 |
| BstMBI | GATC | 6 cut(s) | 19, 79, 202, 405, 553, 636 |
| BstNI | CCWGG | 1 cut(s) | 463 |
| BstSCI | CCNGG | 1 cut(s) | 461 |
| BsuRI | GGCC | 4 cut(s) | 38, 466, 593, 629 |
| BtgZI | GCGATG | 1 cut(s) | 79 |
| BtrI | CACGTC | 2 cut(s) | 548, 578 |
| BtsCI | GGATG | 3 cut(s) | 52, 193, 214 |
| BtsIMutI | CAGTG | 2 cut(s) | 305, 468 |
| Cac8I | GCNNGC | 2 cut(s) | 317, 627 |
| CfoI | GCGC | 1 cut(s) | 611 |
| Cfr13I | GGNCC | 4 cut(s) | 250, 465, 592, 628 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 559, 594, 600, 635 |
| CviAII | CATG | 1 cut(s) | 640 |
| DdeI | CTNAG | 1 cut(s) | 426 |
| DpnI | GATC | 6 cut(s) | 21, 81, 204, 407, 555, 638 |
| DpnII | GATC | 6 cut(s) | 19, 79, 202, 405, 553, 636 |
| DriI | GACNNNNNGTC | 1 cut(s) | 581 |
| EaeI | YGGCCR | 1 cut(s) | 36 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 581 |
| Eco47I | GGWCC | 1 cut(s) | 250 |
| Eco72I | CACGTG | 1 cut(s) | 566 |
| Eco88I | CYCGRG | 1 cut(s) | 488 |
| EcoO109I | RGGNCCY | 2 cut(s) | 250, 592 |
| EcoRII | CCWGG | 1 cut(s) | 461 |
| EcoT22I | ATGCAT | 1 cut(s) | 127 |
| FaeI | CATG | 1 cut(s) | 643 |
| FaqI | GGGAC | 4 cut(s) | 153, 263, 487, 588 |
| FatI | CATG | 1 cut(s) | 639 |
| FbaI | TGATCA | 2 cut(s) | 405, 636 |
| FokI | GGATG | 3 cut(s) | 59, 200, 221 |
| FspBI | CTAG | 3 cut(s) | 347, 632, 655 |
| GlaI | GCGC | 1 cut(s) | 610 |
| HaeIII | GGCC | 4 cut(s) | 38, 466, 593, 629 |
| HapII | CCGG | 1 cut(s) | 206 |
| HhaI | GCGC | 1 cut(s) | 611 |
| Hin1II | CATG | 1 cut(s) | 643 |
| Hin6I | GCGC | 1 cut(s) | 609 |
| HinP1I | GCGC | 1 cut(s) | 609 |
| HinfI | GANTC | 1 cut(s) | 384 |
| HpaII | CCGG | 1 cut(s) | 206 |
| Hpy188I | TCNGA | 1 cut(s) | 72 |
| Hpy188III | TCNNGA | 3 cut(s) | 206, 448, 488 |
| HpyCH4III | ACNGT | 1 cut(s) | 233 |
| HpyCH4IV | ACGT | 3 cut(s) | 547, 565, 577 |
| HpyCH4V | TGCA | 4 cut(s) | 50, 125, 130, 418 |
| HpyF3I | CTNAG | 1 cut(s) | 426 |
| HpySE526I | ACGT | 3 cut(s) | 547, 565, 577 |
| Hsp92II | CATG | 1 cut(s) | 643 |
| HspAI | GCGC | 1 cut(s) | 609 |
| Kpn2I | TCCGGA | 1 cut(s) | 205 |
| Ksp22I | TGATCA | 2 cut(s) | 405, 636 |
| Kzo9I | GATC | 6 cut(s) | 19, 79, 202, 405, 553, 636 |
| LmnI | GCTCC | 1 cut(s) | 285 |
| LpnPI | CCDG | 8 cut(s) | 219, 297, 350, 368, 448, 456, 475, 611 |
| LweI | GCATC | 2 cut(s) | 37, 228 |
| MaeI | CTAG | 3 cut(s) | 347, 632, 655 |
| MaeII | ACGT | 3 cut(s) | 547, 565, 577 |
| MalI | GATC | 6 cut(s) | 21, 81, 204, 407, 555, 638 |
| MboI | GATC | 6 cut(s) | 19, 79, 202, 405, 553, 636 |
| MboII | GAAGA | 1 cut(s) | 17 |
| MlsI | TGGCCA | 1 cut(s) | 38 |
| MluCI | AATT | 1 cut(s) | 496 |
| MluNI | TGGCCA | 1 cut(s) | 38 |
| MmeI | TCCRAC | 1 cut(s) | 523 |
| MnlI | CCTC | 9 cut(s) | 37, 46, 130, 165, 423, 433, 484, 583, 605 |
| Mox20I | TGGCCA | 1 cut(s) | 38 |
| Mph1103I | ATGCAT | 1 cut(s) | 127 |
| MroI | TCCGGA | 1 cut(s) | 205 |
| MscI | TGGCCA | 1 cut(s) | 38 |
| MseI | TTAA | 1 cut(s) | 245 |
| Msp20I | TGGCCA | 1 cut(s) | 38 |
| MspCI | CTTAAG | 1 cut(s) | 244 |
| MspI | CCGG | 1 cut(s) | 206 |
| MspR9I | CCNGG | 1 cut(s) | 463 |
| MvaI | CCWGG | 1 cut(s) | 463 |
| NdeII | GATC | 6 cut(s) | 19, 79, 202, 405, 553, 636 |
| NlaIII | CATG | 1 cut(s) | 643 |
| NlaIV | GGNNCC | 1 cut(s) | 251 |
| NsiI | ATGCAT | 1 cut(s) | 127 |
| PfeI | GAWTC | 1 cut(s) | 384 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 300, 605 |
| PmaCI | CACGTG | 1 cut(s) | 566 |
| PmlI | CACGTG | 1 cut(s) | 566 |
| Ppu21I | YACGTR | 1 cut(s) | 566 |
| PpuMI | RGGWCCY | 1 cut(s) | 250 |
| Psp5II | RGGWCCY | 1 cut(s) | 250 |
| Psp6I | CCWGG | 1 cut(s) | 461 |
| PspCI | CACGTG | 1 cut(s) | 566 |
| PspGI | CCWGG | 1 cut(s) | 461 |
| PspN4I | GGNNCC | 1 cut(s) | 251 |
| PspPI | GGNCC | 4 cut(s) | 250, 465, 592, 628 |
| PspPPI | RGGWCCY | 1 cut(s) | 250 |
| SaqAI | TTAA | 1 cut(s) | 245 |
| Sau3AI | GATC | 6 cut(s) | 19, 79, 202, 405, 553, 636 |
| Sau96I | GGNCC | 4 cut(s) | 250, 465, 592, 628 |
| ScrFI | CCNGG | 1 cut(s) | 463 |
| SfaNI | GCATC | 2 cut(s) | 37, 228 |
| SinI | GGWCC | 1 cut(s) | 250 |
| SmlI | CTYRAG | 1 cut(s) | 244 |
| SmoI | CTYRAG | 1 cut(s) | 244 |
| Sse9I | AATT | 1 cut(s) | 496 |
| SsiI | CCGC | 1 cut(s) | 313 |
| SspMI | CTAG | 3 cut(s) | 347, 632, 655 |
| StyD4I | CCNGG | 1 cut(s) | 461 |
| TaaI | ACNGT | 1 cut(s) | 233 |
| TaiI | ACGT | 3 cut(s) | 550, 568, 580 |
| TaqI | TCGA | 2 cut(s) | 18, 197 |
| TasI | AATT | 1 cut(s) | 496 |
| TfiI | GAWTC | 1 cut(s) | 384 |
| Tru1I | TTAA | 1 cut(s) | 245 |
| Tru9I | TTAA | 1 cut(s) | 245 |
| TscAI | CASTG | 2 cut(s) | 305, 475 |
| TspDTI | ATGAA | 5 cut(s) | 74, 257, 321, 516, 524 |
| TspRI | CASTG | 2 cut(s) | 305, 475 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 300, 605 |
| Vha464I | CTTAAG | 1 cut(s) | 244 |
| VpaK11BI | GGWCC | 1 cut(s) | 250 |
| XspI | CTAG | 3 cut(s) | 347, 632, 655 |
| Zsp2I | ATGCAT | 1 cut(s) | 127 |