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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 283 |
| Acc16I | TGCGCA | 1 cut(s) | 190 |
| Acc36I | ACCTGC | 1 cut(s) | 283 |
| AccB1I | GGYRCC | 1 cut(s) | 337 |
| AccII | CGCG | 2 cut(s) | 76, 90 |
| AciI | CCGC | 4 cut(s) | 231, 316, 538, 676 |
| AclWI | GGATC | 2 cut(s) | 157, 240 |
| AcoI | YGGCCR | 2 cut(s) | 32, 257 |
| AcsI | RAATTY | 1 cut(s) | 380 |
| AcuI | CTGAAG | 1 cut(s) | 599 |
| AfaI | GTAC | 1 cut(s) | 413 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 255, 421, 562, 594, 663 |
| AflII | CTTAAG | 1 cut(s) | 608 |
| AjnI | CCWGG | 1 cut(s) | 174 |
| AluBI | AGCT | 2 cut(s) | 170, 577 |
| AluI | AGCT | 2 cut(s) | 170, 577 |
| AlwI | GGATC | 2 cut(s) | 157, 240 |
| AoxI | GGCC | 8 cut(s) | 12, 32, 65, 177, 212, 232, 257, 344 |
| ApeKI | GCWGC | 1 cut(s) | 136 |
| ApoI | RAATTY | 1 cut(s) | 380 |
| AspLEI | GCGC | 4 cut(s) | 41, 76, 78, 191 |
| AspS9I | GGNCC | 2 cut(s) | 65, 345 |
| AsuC2I | CCSGG | 1 cut(s) | 343 |
| AsuHPI | GGTGA | 3 cut(s) | 9, 264, 520 |
| BaeGI | GKGCMC | 1 cut(s) | 342 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 395, 428 |
| BanI | GGYRCC | 1 cut(s) | 337 |
| BbsI | GAAGAC | 1 cut(s) | 587 |
| BbvI | GCAGC | 1 cut(s) | 148 |
| BccI | CCATC | 3 cut(s) | 210, 226, 352 |
| BceAI | ACGGC | 2 cut(s) | 86, 164 |
| BciT130I | CCWGG | 1 cut(s) | 176 |
| BcnI | CCSGG | 1 cut(s) | 343 |
| BfaI | CTAG | 4 cut(s) | 6, 51, 56, 552 |
| BfmI | CTRYAG | 1 cut(s) | 572 |
| BfoI | RGCGCY | 1 cut(s) | 42 |
| BfrI | CTTAAG | 1 cut(s) | 608 |
| BfuAI | ACCTGC | 1 cut(s) | 283 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 31, 449 |
| BisI | GCNGC | 3 cut(s) | 137, 232, 539 |
| BlpI | GCTNAGC | 1 cut(s) | 97 |
| BlsI | GCNGC | 3 cut(s) | 138, 233, 540 |
| Bme1390I | CCNGG | 2 cut(s) | 176, 343 |
| BmgT120I | GGNCC | 2 cut(s) | 65, 345 |
| BmiI | GGNNCC | 1 cut(s) | 339 |
| BmrFI | CCNGG | 2 cut(s) | 176, 343 |
| BmsI | GCATC | 1 cut(s) | 117 |
| BpiI | GAAGAC | 1 cut(s) | 587 |
| BpmI | CTGGAG | 1 cut(s) | 54 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 97 |
| BpuEI | CTTGAG | 1 cut(s) | 428 |
| BpuMI | CCSGG | 1 cut(s) | 343 |
| BsaJI | CCNNGG | 1 cut(s) | 341 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 255, 421, 562, 594, 663 |
| Bse118I | RCCGGY | 2 cut(s) | 210, 255 |
| Bse1I | ACTGG | 1 cut(s) | 15 |
| BseBI | CCWGG | 1 cut(s) | 176 |
| BseDI | CCNNGG | 1 cut(s) | 341 |
| BseGI | GGATG | 2 cut(s) | 202, 620 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 255, 421, 562, 594, 663 |
| BseMII | CTCAG | 3 cut(s) | 111, 411, 524 |
| BseNI | ACTGG | 1 cut(s) | 15 |
| BsePI | GCGCGC | 1 cut(s) | 74 |
| BseSI | GKGCMC | 1 cut(s) | 342 |
| BseX3I | CGGCCG | 1 cut(s) | 32 |
| BseXI | GCAGC | 1 cut(s) | 148 |
| BseYI | CCCAGC | 2 cut(s) | 166, 561 |
| Bsh1236I | CGCG | 2 cut(s) | 76, 90 |
| Bsh1285I | CGRYCG | 2 cut(s) | 35, 161 |
| BshFI | GGCC | 8 cut(s) | 14, 34, 67, 179, 214, 234, 259, 346 |
| BshNI | GGYRCC | 1 cut(s) | 337 |
| BsiEI | CGRYCG | 2 cut(s) | 35, 161 |
| BsiSI | CCGG | 5 cut(s) | 31, 211, 228, 256, 343 |
| BslFI | GGGAC | 1 cut(s) | 184 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 255, 421, 562, 594, 663 |
| BsmFI | GGGAC | 1 cut(s) | 184 |
| BsmI | GAATGC | 1 cut(s) | 607 |
| BsnI | GGCC | 8 cut(s) | 14, 34, 67, 179, 214, 234, 259, 346 |
| Bsp1286I | GDGCHC | 1 cut(s) | 342 |
| Bsp143I | GATC | 3 cut(s) | 162, 245, 364 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 97 |
| BspACI | CCGC | 4 cut(s) | 231, 316, 538, 676 |
| BspANI | GGCC | 8 cut(s) | 14, 34, 67, 179, 214, 234, 259, 346 |
| BspCNI | CTCAG | 3 cut(s) | 110, 410, 525 |
| BspFNI | CGCG | 2 cut(s) | 76, 90 |
| BspHI | TCATGA | 1 cut(s) | 631 |
| BspLI | GGNNCC | 1 cut(s) | 339 |
| BspMI | ACCTGC | 1 cut(s) | 283 |
| BspPI | GGATC | 2 cut(s) | 157, 240 |
| BspT107I | GGYRCC | 1 cut(s) | 337 |
| BspTI | CTTAAG | 1 cut(s) | 608 |
| BsrFI | RCCGGY | 2 cut(s) | 210, 255 |
| BsrI | ACTGG | 1 cut(s) | 15 |
| BssAI | RCCGGY | 2 cut(s) | 210, 255 |
| BssECI | CCNNGG | 1 cut(s) | 341 |
| BssHII | GCGCGC | 1 cut(s) | 74 |
| BssMI | GATC | 3 cut(s) | 162, 245, 364 |
| Bst2UI | CCWGG | 1 cut(s) | 176 |
| Bst4CI | ACNGT | 4 cut(s) | 46, 198, 597, 658 |
| BstAFI | CTTAAG | 1 cut(s) | 608 |
| BstC8I | GCNNGC | 2 cut(s) | 76, 257 |
| BstDEI | CTNAG | 3 cut(s) | 97, 397, 533 |
| BstF5I | GGATG | 2 cut(s) | 202, 620 |
| BstFNI | CGCG | 2 cut(s) | 76, 90 |
| BstH2I | RGCGCY | 1 cut(s) | 42 |
| BstHHI | GCGC | 4 cut(s) | 41, 76, 78, 191 |
| BstKTI | GATC | 3 cut(s) | 165, 248, 367 |
| BstMBI | GATC | 3 cut(s) | 162, 245, 364 |
| BstMCI | CGRYCG | 2 cut(s) | 35, 161 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 31, 73, 114, 176, 449 |
| BstNI | CCWGG | 1 cut(s) | 176 |
| BstSCI | CCNGG | 2 cut(s) | 174, 341 |
| BstSFI | CTRYAG | 1 cut(s) | 572 |
| BstSLI | GKGCMC | 1 cut(s) | 342 |
| BstUI | CGCG | 2 cut(s) | 76, 90 |
| BstV1I | GCAGC | 1 cut(s) | 148 |
| BstV2I | GAAGAC | 1 cut(s) | 587 |
| BstZI | CGGCCG | 1 cut(s) | 32 |
| BsuRI | GGCC | 8 cut(s) | 14, 34, 67, 179, 214, 234, 259, 346 |
| BtsCI | GGATG | 2 cut(s) | 202, 620 |
| BtsI | GCAGTG | 1 cut(s) | 462 |
| BtsIMutI | CAGTG | 3 cut(s) | 51, 462, 668 |
| BveI | ACCTGC | 1 cut(s) | 283 |
| Cac8I | GCNNGC | 2 cut(s) | 76, 257 |
| CciI | TCATGA | 1 cut(s) | 631 |
| CfoI | GCGC | 4 cut(s) | 41, 76, 78, 191 |
| Cfr10I | RCCGGY | 2 cut(s) | 210, 255 |
| Cfr13I | GGNCC | 2 cut(s) | 65, 345 |
| CseI | GACGC | 1 cut(s) | 79 |
| Csp6I | GTAC | 1 cut(s) | 412 |
| CviAII | CATG | 2 cut(s) | 62, 632 |
| CviQI | GTAC | 1 cut(s) | 412 |
| DdeI | CTNAG | 3 cut(s) | 97, 397, 533 |
| DpnI | GATC | 3 cut(s) | 164, 247, 366 |
| DpnII | GATC | 3 cut(s) | 162, 245, 364 |
| EaeI | YGGCCR | 2 cut(s) | 32, 257 |
| EagI | CGGCCG | 1 cut(s) | 32 |
| EclXI | CGGCCG | 1 cut(s) | 32 |
| Eco52I | CGGCCG | 1 cut(s) | 32 |
| Eco57I | CTGAAG | 1 cut(s) | 599 |
| EcoRII | CCWGG | 1 cut(s) | 174 |
| FaeI | CATG | 2 cut(s) | 65, 635 |
| FaiI | YATR | 3 cut(s) | 63, 543, 633 |
| FaqI | GGGAC | 1 cut(s) | 184 |
| FatI | CATG | 2 cut(s) | 61, 631 |
| FauI | CCCGC | 1 cut(s) | 309 |
| Fnu4HI | GCNGC | 3 cut(s) | 137, 232, 539 |
| FokI | GGATG | 2 cut(s) | 189, 627 |
| Fsp4HI | GCNGC | 3 cut(s) | 137, 232, 539 |
| FspBI | CTAG | 4 cut(s) | 6, 51, 56, 552 |
| FspI | TGCGCA | 1 cut(s) | 190 |
| GlaI | GCGC | 4 cut(s) | 40, 75, 77, 190 |
| GluI | GCNGC | 3 cut(s) | 137, 232, 539 |
| GsaI | CCCAGC | 2 cut(s) | 170, 565 |
| GsuI | CTGGAG | 1 cut(s) | 54 |
| HaeII | RGCGCY | 1 cut(s) | 42 |
| HaeIII | GGCC | 8 cut(s) | 14, 34, 67, 179, 214, 234, 259, 346 |
| HapII | CCGG | 5 cut(s) | 31, 211, 228, 256, 343 |
| HgaI | GACGC | 1 cut(s) | 79 |
| HhaI | GCGC | 4 cut(s) | 41, 76, 78, 191 |
| Hin1II | CATG | 2 cut(s) | 65, 635 |
| Hin6I | GCGC | 4 cut(s) | 39, 74, 76, 189 |
| HinP1I | GCGC | 4 cut(s) | 39, 74, 76, 189 |
| HinfI | GANTC | 1 cut(s) | 395 |
| HpaII | CCGG | 5 cut(s) | 31, 211, 228, 256, 343 |
| HphI | GGTGA | 3 cut(s) | 9, 264, 520 |
| Hpy188I | TCNGA | 3 cut(s) | 400, 430, 534 |
| Hpy188III | TCNNGA | 2 cut(s) | 206, 632 |
| Hpy99I | CGWCG | 1 cut(s) | 159 |
| HpyAV | CCTTC | 3 cut(s) | 245, 328, 395 |
| HpyCH4III | ACNGT | 4 cut(s) | 46, 198, 597, 658 |
| HpyCH4V | TGCA | 2 cut(s) | 108, 278 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 31, 73, 114, 176, 449 |
| HpyF3I | CTNAG | 3 cut(s) | 97, 397, 533 |
| Hsp92II | CATG | 2 cut(s) | 65, 635 |
| HspAI | GCGC | 4 cut(s) | 39, 74, 76, 189 |
| KroI | GCCGGC | 1 cut(s) | 255 |
| KroNI | GCCGGC | 1 cut(s) | 257 |
| Kzo9I | GATC | 3 cut(s) | 162, 245, 364 |
| Lsp1109I | GCAGC | 1 cut(s) | 148 |
| LweI | GCATC | 1 cut(s) | 117 |
| MaeI | CTAG | 4 cut(s) | 6, 51, 56, 552 |
| MaeIII | GTNAC | 2 cut(s) | 121, 270 |
| MalI | GATC | 3 cut(s) | 164, 247, 366 |
| MboI | GATC | 3 cut(s) | 162, 245, 364 |
| MboII | GAAGA | 4 cut(s) | 319, 340, 343, 592 |
| MhlI | GDGCHC | 1 cut(s) | 342 |
| MluCI | AATT | 1 cut(s) | 380 |
| MlyI | GAGTC | 1 cut(s) | 389 |
| MnlI | CCTC | 7 cut(s) | 25, 30, 36, 78, 96, 225, 528 |
| MroNI | GCCGGC | 1 cut(s) | 255 |
| MseI | TTAA | 2 cut(s) | 524, 609 |
| MspA1I | CMGCKG | 2 cut(s) | 577, 678 |
| MspCI | CTTAAG | 1 cut(s) | 608 |
| MspI | CCGG | 5 cut(s) | 31, 211, 228, 256, 343 |
| MspR9I | CCNGG | 2 cut(s) | 176, 343 |
| Mva1269I | GAATGC | 1 cut(s) | 607 |
| MvaI | CCWGG | 1 cut(s) | 176 |
| MvnI | CGCG | 2 cut(s) | 76, 90 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 31, 73, 114, 176, 449 |
| NaeI | GCCGGC | 1 cut(s) | 257 |
| NciI | CCSGG | 1 cut(s) | 343 |
| NdeII | GATC | 3 cut(s) | 162, 245, 364 |
| NgoMIV | GCCGGC | 1 cut(s) | 255 |
| NlaIII | CATG | 2 cut(s) | 65, 635 |
| NlaIV | GGNNCC | 1 cut(s) | 339 |
| NmeAIII | GCCGAG | 1 cut(s) | 60 |
| NmuCI | GTSAC | 2 cut(s) | 121, 270 |
| NsbI | TGCGCA | 1 cut(s) | 190 |
| PagI | TCATGA | 1 cut(s) | 631 |
| PaqCI | CACCTGC | 1 cut(s) | 283 |
| PauI | GCGCGC | 1 cut(s) | 74 |
| PctI | GAATGC | 1 cut(s) | 607 |
| PdiI | GCCGGC | 1 cut(s) | 257 |
| PkrI | GCNGC | 3 cut(s) | 138, 233, 540 |
| PleI | GAGTC | 1 cut(s) | 389 |
| PpsI | GAGTC | 1 cut(s) | 389 |
| Psp6I | CCWGG | 1 cut(s) | 174 |
| PspFI | CCCAGC | 2 cut(s) | 166, 561 |
| PspGI | CCWGG | 1 cut(s) | 174 |
| PspN4I | GGNNCC | 1 cut(s) | 339 |
| PspPI | GGNCC | 2 cut(s) | 65, 345 |
| PteI | GCGCGC | 1 cut(s) | 74 |
| PvuII | CAGCTG | 1 cut(s) | 577 |
| RsaI | GTAC | 1 cut(s) | 413 |
| RsaNI | GTAC | 1 cut(s) | 412 |
| SaqAI | TTAA | 2 cut(s) | 524, 609 |
| SatI | GCNGC | 3 cut(s) | 137, 232, 539 |
| Sau3AI | GATC | 3 cut(s) | 162, 245, 364 |
| Sau96I | GGNCC | 2 cut(s) | 65, 345 |
| SchI | GAGTC | 1 cut(s) | 389 |
| ScrFI | CCNGG | 2 cut(s) | 176, 343 |
| SduI | GDGCHC | 1 cut(s) | 342 |
| SetI | ASST | 9 cut(s) | 22, 172, 267, 277, 339, 379, 510, 573, 579 |
| SfaNI | GCATC | 1 cut(s) | 117 |
| SfcI | CTRYAG | 1 cut(s) | 572 |
| SmlI | CTYRAG | 2 cut(s) | 407, 608 |
| SmoI | CTYRAG | 2 cut(s) | 407, 608 |
| Sse9I | AATT | 1 cut(s) | 380 |
| SsiI | CCGC | 4 cut(s) | 231, 316, 538, 676 |
| SspI | AATATT | 2 cut(s) | 528, 628 |
| SspMI | CTAG | 4 cut(s) | 6, 51, 56, 552 |
| StyD4I | CCNGG | 2 cut(s) | 174, 341 |
| TaaI | ACNGT | 4 cut(s) | 46, 198, 597, 658 |
| TaqI | TCGA | 2 cut(s) | 244, 373 |
| TaqII | GACCGA | 1 cut(s) | 175 |
| TasI | AATT | 1 cut(s) | 380 |
| TauI | GCSGC | 2 cut(s) | 234, 541 |
| Tru1I | TTAA | 2 cut(s) | 524, 609 |
| Tru9I | TTAA | 2 cut(s) | 524, 609 |
| TscAI | CASTG | 3 cut(s) | 51, 469, 668 |
| TseFI | GTSAC | 2 cut(s) | 121, 270 |
| TseI | GCWGC | 1 cut(s) | 136 |
| Tsp45I | GTSAC | 2 cut(s) | 121, 270 |
| TspDTI | ATGAA | 3 cut(s) | 507, 620, 648 |
| TspRI | CASTG | 3 cut(s) | 51, 469, 668 |
| Vha464I | CTTAAG | 1 cut(s) | 608 |
| XapI | RAATTY | 1 cut(s) | 380 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 355 |
| XspI | CTAG | 4 cut(s) | 6, 51, 56, 552 |