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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 710 |
| AciI | CCGC | 4 cut(s) | 259, 431, 550, 714 |
| AclWI | GGATC | 3 cut(s) | 2, 355, 539 |
| AcsI | RAATTY | 2 cut(s) | 325, 425 |
| AcuI | CTGAAG | 2 cut(s) | 375, 578 |
| AdeI | CACNNNGTG | 2 cut(s) | 563, 743 |
| AfaI | GTAC | 1 cut(s) | 56 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 64, 246, 467, 700, 701, 702 |
| AflII | CTTAAG | 1 cut(s) | 191 |
| AflIII | ACRYGT | 1 cut(s) | 300 |
| AgsI | TTSAA | 2 cut(s) | 163, 292 |
| AjiI | CACGTC | 1 cut(s) | 320 |
| AluBI | AGCT | 1 cut(s) | 665 |
| AluI | AGCT | 1 cut(s) | 665 |
| Alw26I | GTCTC | 3 cut(s) | 93, 443, 540 |
| AlwI | GGATC | 3 cut(s) | 2, 355, 539 |
| AoxI | GGCC | 1 cut(s) | 759 |
| ApeKI | GCWGC | 1 cut(s) | 665 |
| ApoI | RAATTY | 2 cut(s) | 325, 425 |
| AspLEI | GCGC | 1 cut(s) | 309 |
| AspS9I | GGNCC | 1 cut(s) | 146 |
| AsuHPI | GGTGA | 1 cut(s) | 802 |
| AvaII | GGWCC | 1 cut(s) | 146 |
| BaeGI | GKGCMC | 1 cut(s) | 708 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 38, 71 |
| BanI | GGYRCC | 1 cut(s) | 710 |
| BbsI | GAAGAC | 3 cut(s) | 170, 374, 448 |
| BbvI | GCAGC | 1 cut(s) | 652 |
| BccI | CCATC | 3 cut(s) | 38, 122, 137 |
| BceAI | ACGGC | 1 cut(s) | 746 |
| BcoDI | GTCTC | 3 cut(s) | 93, 443, 540 |
| BfaI | CTAG | 1 cut(s) | 404 |
| BfrI | CTTAAG | 1 cut(s) | 191 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 92 |
| BisI | GCNGC | 2 cut(s) | 666, 714 |
| BlsI | GCNGC | 2 cut(s) | 667, 715 |
| Bme18I | GGWCC | 1 cut(s) | 146 |
| BmgBI | CACGTC | 1 cut(s) | 320 |
| BmgT120I | GGNCC | 1 cut(s) | 146 |
| BmiI | GGNNCC | 2 cut(s) | 712, 768 |
| BmsI | GCATC | 2 cut(s) | 603, 610 |
| BpiI | GAAGAC | 3 cut(s) | 170, 374, 448 |
| BpuEI | CTTGAG | 1 cut(s) | 71 |
| Bsa29I | ATCGAT | 1 cut(s) | 588 |
| BsaJI | CCNNGG | 4 cut(s) | 494, 762, 772, 814 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 738, 768 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 64, 246, 467, 700, 701, 702 |
| Bse1I | ACTGG | 1 cut(s) | 412 |
| BseCI | ATCGAT | 1 cut(s) | 588 |
| BseDI | CCNNGG | 4 cut(s) | 494, 762, 772, 814 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 64, 246, 467, 700, 701, 702 |
| BseMII | CTCAG | 2 cut(s) | 12, 54 |
| BseNI | ACTGG | 1 cut(s) | 412 |
| BseSI | GKGCMC | 1 cut(s) | 708 |
| BseXI | GCAGC | 1 cut(s) | 652 |
| BshFI | GGCC | 1 cut(s) | 761 |
| BshNI | GGYRCC | 1 cut(s) | 710 |
| BshVI | ATCGAT | 1 cut(s) | 588 |
| BslFI | GGGAC | 3 cut(s) | 210, 509, 677 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 64, 246, 467, 700, 701, 702 |
| BsmAI | GTCTC | 3 cut(s) | 93, 443, 540 |
| BsmFI | GGGAC | 3 cut(s) | 210, 509, 677 |
| BsmI | GAATGC | 1 cut(s) | 190 |
| BsnI | GGCC | 1 cut(s) | 761 |
| Bsp1286I | GDGCHC | 1 cut(s) | 708 |
| Bsp143I | GATC | 5 cut(s) | 7, 360, 544, 589, 650 |
| BspACI | CCGC | 4 cut(s) | 259, 431, 550, 714 |
| BspANI | GGCC | 1 cut(s) | 761 |
| BspCNI | CTCAG | 2 cut(s) | 13, 53 |
| BspDI | ATCGAT | 1 cut(s) | 588 |
| BspHI | TCATGA | 1 cut(s) | 214 |
| BspLI | GGNNCC | 2 cut(s) | 712, 768 |
| BspPI | GGATC | 3 cut(s) | 2, 355, 539 |
| BspT107I | GGYRCC | 1 cut(s) | 710 |
| BspTI | CTTAAG | 1 cut(s) | 191 |
| BsrI | ACTGG | 1 cut(s) | 412 |
| BssECI | CCNNGG | 4 cut(s) | 494, 762, 772, 814 |
| BssMI | GATC | 5 cut(s) | 7, 360, 544, 589, 650 |
| BssT1I | CCWWGG | 3 cut(s) | 494, 772, 814 |
| Bst4CI | ACNGT | 6 cut(s) | 62, 150, 180, 241, 454, 710 |
| Bst6I | CTCTTC | 2 cut(s) | 772, 817 |
| BstAFI | CTTAAG | 1 cut(s) | 191 |
| BstC8I | GCNNGC | 2 cut(s) | 263, 678 |
| BstDEI | CTNAG | 3 cut(s) | 21, 40, 740 |
| BstDSI | CCRYGG | 1 cut(s) | 762 |
| BstHHI | GCGC | 1 cut(s) | 309 |
| BstKTI | GATC | 5 cut(s) | 10, 363, 547, 592, 653 |
| BstMAI | GTCTC | 3 cut(s) | 93, 443, 540 |
| BstMBI | GATC | 5 cut(s) | 7, 360, 544, 589, 650 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 92 |
| BstNSI | RCATGY | 1 cut(s) | 304 |
| BstSLI | GKGCMC | 1 cut(s) | 708 |
| BstV1I | GCAGC | 1 cut(s) | 652 |
| BstV2I | GAAGAC | 3 cut(s) | 170, 374, 448 |
| Bsu15I | ATCGAT | 1 cut(s) | 588 |
| BsuRI | GGCC | 1 cut(s) | 761 |
| BsuTUI | ATCGAT | 1 cut(s) | 588 |
| BtgI | CCRYGG | 1 cut(s) | 762 |
| BtrI | CACGTC | 1 cut(s) | 320 |
| BtsI | GCAGTG | 1 cut(s) | 105 |
| BtsIMutI | CAGTG | 3 cut(s) | 105, 126, 251 |
| Cac8I | GCNNGC | 2 cut(s) | 263, 678 |
| CciI | TCATGA | 1 cut(s) | 214 |
| CfoI | GCGC | 1 cut(s) | 309 |
| Cfr13I | GGNCC | 1 cut(s) | 146 |
| ClaI | ATCGAT | 1 cut(s) | 588 |
| Csp6I | GTAC | 1 cut(s) | 55 |
| CviAII | CATG | 2 cut(s) | 215, 301 |
| CviJI | RGCY | 5 cut(s) | 5, 421, 665, 761, 767 |
| CviKI_1 | RGCY | 5 cut(s) | 5, 421, 665, 761, 767 |
| CviQI | GTAC | 1 cut(s) | 55 |
| DdeI | CTNAG | 3 cut(s) | 21, 40, 740 |
| DpnI | GATC | 5 cut(s) | 9, 362, 546, 591, 652 |
| DpnII | GATC | 5 cut(s) | 7, 360, 544, 589, 650 |
| DraIII | CACNNNGTG | 2 cut(s) | 563, 743 |
| Eam1104I | CTCTTC | 2 cut(s) | 772, 817 |
| EarI | CTCTTC | 2 cut(s) | 772, 817 |
| Eco130I | CCWWGG | 3 cut(s) | 494, 772, 814 |
| Eco32I | GATATC | 1 cut(s) | 634 |
| Eco47I | GGWCC | 1 cut(s) | 146 |
| Eco57I | CTGAAG | 2 cut(s) | 375, 578 |
| EcoRV | GATATC | 1 cut(s) | 634 |
| EcoT14I | CCWWGG | 3 cut(s) | 494, 772, 814 |
| ErhI | CCWWGG | 3 cut(s) | 494, 772, 814 |
| FaeI | CATG | 2 cut(s) | 218, 304 |
| FaiI | YATR | 7 cut(s) | 216, 302, 359, 401, 417, 657, 659 |
| FaqI | GGGAC | 3 cut(s) | 210, 509, 677 |
| FatI | CATG | 2 cut(s) | 214, 300 |
| FauI | CCCGC | 1 cut(s) | 557 |
| Fnu4HI | GCNGC | 2 cut(s) | 666, 714 |
| Fsp4HI | GCNGC | 2 cut(s) | 666, 714 |
| FspBI | CTAG | 1 cut(s) | 404 |
| GlaI | GCGC | 1 cut(s) | 308 |
| GluI | GCNGC | 2 cut(s) | 666, 714 |
| HaeIII | GGCC | 1 cut(s) | 761 |
| HhaI | GCGC | 1 cut(s) | 309 |
| Hin1II | CATG | 2 cut(s) | 218, 304 |
| Hin6I | GCGC | 1 cut(s) | 307 |
| HinP1I | GCGC | 1 cut(s) | 307 |
| HinfI | GANTC | 3 cut(s) | 38, 370, 608 |
| HphI | GGTGA | 1 cut(s) | 802 |
| Hpy166II | GTNNAC | 1 cut(s) | 627 |
| Hpy188I | TCNGA | 4 cut(s) | 43, 73, 154, 597 |
| Hpy188III | TCNNGA | 2 cut(s) | 215, 364 |
| Hpy8I | GTNNAC | 1 cut(s) | 627 |
| Hpy99I | CGWCG | 1 cut(s) | 466 |
| HpyCH4III | ACNGT | 6 cut(s) | 62, 150, 180, 241, 454, 710 |
| HpyCH4IV | ACGT | 3 cut(s) | 199, 319, 600 |
| HpyCH4V | TGCA | 2 cut(s) | 668, 680 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 92 |
| HpyF3I | CTNAG | 3 cut(s) | 21, 40, 740 |
| HpySE526I | ACGT | 3 cut(s) | 199, 319, 600 |
| Hsp92II | CATG | 2 cut(s) | 218, 304 |
| HspAI | GCGC | 1 cut(s) | 307 |
| Kzo9I | GATC | 5 cut(s) | 7, 360, 544, 589, 650 |
| LmnI | GCTCC | 1 cut(s) | 772 |
| LpnPI | CCDG | 8 cut(s) | 33, 243, 377, 407, 425, 630, 675, 690 |
| Lsp1109I | GCAGC | 1 cut(s) | 652 |
| LweI | GCATC | 2 cut(s) | 603, 610 |
| MaeI | CTAG | 1 cut(s) | 404 |
| MaeII | ACGT | 3 cut(s) | 199, 319, 600 |
| MaeIII | GTNAC | 3 cut(s) | 437, 643, 788 |
| MalI | GATC | 5 cut(s) | 9, 362, 546, 591, 652 |
| MboI | GATC | 5 cut(s) | 7, 360, 544, 589, 650 |
| MboII | GAAGA | 6 cut(s) | 175, 379, 448, 584, 789, 831 |
| MhlI | GDGCHC | 1 cut(s) | 708 |
| MluCI | AATT | 4 cut(s) | 325, 396, 425, 509 |
| MlyI | GAGTC | 2 cut(s) | 32, 364 |
| MmeI | TCCRAC | 1 cut(s) | 35 |
| MnlI | CCTC | 6 cut(s) | 716, 740, 751, 773, 779, 818 |
| MseI | TTAA | 1 cut(s) | 192 |
| MslI | CAYNNNNRTG | 1 cut(s) | 444 |
| MspA1I | CMGCKG | 1 cut(s) | 665 |
| MspCI | CTTAAG | 1 cut(s) | 191 |
| Mva1269I | GAATGC | 1 cut(s) | 190 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 92 |
| NdeII | GATC | 5 cut(s) | 7, 360, 544, 589, 650 |
| NlaIII | CATG | 2 cut(s) | 218, 304 |
| NlaIV | GGNNCC | 2 cut(s) | 712, 768 |
| NmuCI | GTSAC | 3 cut(s) | 437, 643, 788 |
| NspI | RCATGY | 1 cut(s) | 304 |
| PagI | TCATGA | 1 cut(s) | 214 |
| PciI | ACATGT | 1 cut(s) | 300 |
| PctI | GAATGC | 1 cut(s) | 190 |
| PfeI | GAWTC | 1 cut(s) | 608 |
| PkrI | GCNGC | 2 cut(s) | 667, 715 |
| PleI | GAGTC | 2 cut(s) | 32, 364 |
| PpsI | GAGTC | 2 cut(s) | 32, 364 |
| PscI | ACATGT | 1 cut(s) | 300 |
| PspN4I | GGNNCC | 2 cut(s) | 712, 768 |
| PspPI | GGNCC | 1 cut(s) | 146 |
| PvuII | CAGCTG | 1 cut(s) | 665 |
| RsaI | GTAC | 1 cut(s) | 56 |
| RsaNI | GTAC | 1 cut(s) | 55 |
| RseI | CAYNNNNRTG | 1 cut(s) | 444 |
| SaqAI | TTAA | 1 cut(s) | 192 |
| SatI | GCNGC | 2 cut(s) | 666, 714 |
| Sau3AI | GATC | 5 cut(s) | 7, 360, 544, 589, 650 |
| Sau96I | GGNCC | 1 cut(s) | 146 |
| SchI | GAGTC | 2 cut(s) | 32, 364 |
| SduI | GDGCHC | 1 cut(s) | 708 |
| SetI | ASST | 9 cut(s) | 22, 202, 224, 322, 603, 667, 686, 751, 790 |
| SfaNI | GCATC | 2 cut(s) | 603, 610 |
| SinI | GGWCC | 1 cut(s) | 146 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 444 |
| SmlI | CTYRAG | 2 cut(s) | 50, 191 |
| SmoI | CTYRAG | 2 cut(s) | 50, 191 |
| Sse9I | AATT | 4 cut(s) | 325, 396, 425, 509 |
| SsiI | CCGC | 4 cut(s) | 259, 431, 550, 714 |
| SspMI | CTAG | 1 cut(s) | 404 |
| StyI | CCWWGG | 3 cut(s) | 494, 772, 814 |
| TaaI | ACNGT | 6 cut(s) | 62, 150, 180, 241, 454, 710 |
| TaiI | ACGT | 3 cut(s) | 202, 322, 603 |
| TaqI | TCGA | 4 cut(s) | 16, 588, 611, 799 |
| TasI | AATT | 4 cut(s) | 325, 396, 425, 509 |
| TauI | GCSGC | 1 cut(s) | 716 |
| TfiI | GAWTC | 1 cut(s) | 608 |
| Tru1I | TTAA | 1 cut(s) | 192 |
| Tru9I | TTAA | 1 cut(s) | 192 |
| TscAI | CASTG | 3 cut(s) | 112, 133, 251 |
| TseFI | GTSAC | 3 cut(s) | 437, 643, 788 |
| TseI | GCWGC | 1 cut(s) | 665 |
| Tsp45I | GTSAC | 3 cut(s) | 437, 643, 788 |
| TspDTI | ATGAA | 2 cut(s) | 203, 267 |
| TspRI | CASTG | 3 cut(s) | 112, 133, 251 |
| Vha464I | CTTAAG | 1 cut(s) | 191 |
| VpaK11BI | GGWCC | 1 cut(s) | 146 |
| XapI | RAATTY | 2 cut(s) | 325, 425 |
| XceI | RCATGY | 1 cut(s) | 304 |
| XspI | CTAG | 1 cut(s) | 404 |