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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 57, 117 |
| AccBSI | CCGCTC | 1 cut(s) | 348 |
| AccII | CGCG | 1 cut(s) | 311 |
| AccIII | TCCGGA | 1 cut(s) | 365 |
| AclWI | GGATC | 4 cut(s) | 449, 632, 1111, 1172 |
| AcoI | YGGCCR | 3 cut(s) | 28, 379, 744 |
| AcsI | RAATTY | 2 cut(s) | 264, 1047 |
| AcuI | CTGAAG | 3 cut(s) | 177, 647, 882 |
| AcvI | CACGTG | 2 cut(s) | 1129, 1147 |
| AcyI | GRCGYC | 2 cut(s) | 118, 135 |
| AdeI | CACNNNGTG | 1 cut(s) | 1147 |
| AfaI | GTAC | 3 cut(s) | 503, 659, 1240 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 240, 420, 511, 652, 742, 753, 1098 |
| AflII | CTTAAG | 2 cut(s) | 698, 818 |
| AflIII | ACRYGT | 1 cut(s) | 807 |
| AgsI | TTSAA | 3 cut(s) | 670, 799, 1015 |
| AjiI | CACGTC | 1 cut(s) | 1111 |
| AjnI | CCWGG | 2 cut(s) | 34, 1025 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 317, 349 |
| AluBI | AGCT | 4 cut(s) | 50, 331, 355, 452 |
| AluI | AGCT | 4 cut(s) | 50, 331, 355, 452 |
| Alw26I | GTCTC | 5 cut(s) | 142, 253, 443, 833, 988 |
| AlwI | GGATC | 4 cut(s) | 449, 632, 1111, 1172 |
| Ama87I | CYCGRG | 2 cut(s) | 433, 1052 |
| Aor13HI | TCCGGA | 1 cut(s) | 365 |
| AoxI | GGCC | 5 cut(s) | 28, 37, 379, 744, 1028 |
| ApeKI | GCWGC | 1 cut(s) | 68 |
| ApoI | RAATTY | 2 cut(s) | 264, 1047 |
| AspA2I | CCTAGG | 2 cut(s) | 43, 121 |
| AspLEI | GCGC | 3 cut(s) | 120, 313, 816 |
| AspS9I | GGNCC | 2 cut(s) | 243, 1029 |
| AsuC2I | CCSGG | 2 cut(s) | 378, 1036 |
| AsuHPI | GGTGA | 4 cut(s) | 219, 274, 311, 610 |
| AvaI | CYCGRG | 2 cut(s) | 433, 1052 |
| AvaII | GGWCC | 1 cut(s) | 243 |
| AvrII | CCTAGG | 2 cut(s) | 43, 121 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 485, 518 |
| BanI | GGYRCC | 2 cut(s) | 57, 117 |
| BbrPI | CACGTG | 2 cut(s) | 1129, 1147 |
| BbsI | GAAGAC | 1 cut(s) | 677 |
| BbvI | GCAGC | 1 cut(s) | 55 |
| BccI | CCATC | 2 cut(s) | 230, 513 |
| BceAI | ACGGC | 2 cut(s) | 377, 731 |
| BciT130I | CCWGG | 2 cut(s) | 36, 1027 |
| BcnI | CCSGG | 2 cut(s) | 378, 1036 |
| BcoDI | GTCTC | 5 cut(s) | 142, 253, 443, 833, 988 |
| BfaI | CTAG | 5 cut(s) | 44, 122, 420, 642, 911 |
| BfmI | CTRYAG | 1 cut(s) | 1212 |
| BfoI | RGCGCY | 1 cut(s) | 121 |
| BfrI | CTTAAG | 2 cut(s) | 698, 818 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 36 |
| BisI | GCNGC | 5 cut(s) | 31, 40, 56, 69, 382 |
| BlnI | CCTAGG | 2 cut(s) | 43, 121 |
| BlsI | GCNGC | 5 cut(s) | 32, 41, 57, 70, 383 |
| Bme1390I | CCNGG | 4 cut(s) | 36, 378, 1027, 1036 |
| Bme18I | GGWCC | 1 cut(s) | 243 |
| BmeT110I | CYCGRG | 2 cut(s) | 433, 1052 |
| BmgBI | CACGTC | 1 cut(s) | 1111 |
| BmgT120I | GGNCC | 2 cut(s) | 243, 1029 |
| BmiI | GGNNCC | 2 cut(s) | 59, 119 |
| BmrFI | CCNGG | 4 cut(s) | 36, 378, 1027, 1036 |
| BmsI | GCATC | 3 cut(s) | 187, 682, 1169 |
| BpiI | GAAGAC | 1 cut(s) | 677 |
| BpmI | CTGGAG | 1 cut(s) | 184 |
| BpuEI | CTTGAG | 1 cut(s) | 518 |
| BpuMI | CCSGG | 2 cut(s) | 378, 1036 |
| BsaAI | YACGTR | 2 cut(s) | 1129, 1147 |
| BsaHI | GRCGYC | 2 cut(s) | 118, 135 |
| BsaJI | CCNNGG | 6 cut(s) | 34, 43, 121, 288, 393, 686 |
| BsaWI | WCCGGW | 2 cut(s) | 240, 365 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 240, 420, 511, 652, 742, 753, 1098 |
| Bse1I | ACTGG | 2 cut(s) | 747, 919 |
| BseAI | TCCGGA | 1 cut(s) | 365 |
| BseBI | CCWGG | 2 cut(s) | 36, 1027 |
| BseDI | CCNNGG | 6 cut(s) | 34, 43, 121, 288, 393, 686 |
| BseGI | GGATG | 3 cut(s) | 178, 697, 710 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 240, 420, 511, 652, 742, 753, 1098 |
| BseMII | CTCAG | 4 cut(s) | 365, 459, 614, 981 |
| BseNI | ACTGG | 2 cut(s) | 747, 919 |
| BseX3I | CGGCCG | 2 cut(s) | 28, 379 |
| BseXI | GCAGC | 1 cut(s) | 55 |
| BseYI | CCCAGC | 2 cut(s) | 50, 651 |
| Bsh1236I | CGCG | 1 cut(s) | 311 |
| Bsh1285I | CGRYCG | 3 cut(s) | 31, 258, 382 |
| BshFI | GGCC | 5 cut(s) | 30, 39, 381, 746, 1030 |
| BshNI | GGYRCC | 2 cut(s) | 57, 117 |
| BsiEI | CGRYCG | 3 cut(s) | 31, 258, 382 |
| BsiHKCI | CYCGRG | 2 cut(s) | 433, 1052 |
| BsiSI | CCGG | 4 cut(s) | 241, 366, 378, 1035 |
| BslFI | GGGAC | 2 cut(s) | 1051, 1169 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 240, 420, 511, 652, 742, 753, 1098 |
| BsmAI | GTCTC | 5 cut(s) | 142, 253, 443, 833, 988 |
| BsmBI | CGTCTC | 2 cut(s) | 142, 253 |
| BsmFI | GGGAC | 2 cut(s) | 1051, 1169 |
| BsmI | GAATGC | 1 cut(s) | 384 |
| BsnI | GGCC | 5 cut(s) | 30, 39, 381, 746, 1030 |
| BsoBI | CYCGRG | 2 cut(s) | 433, 1052 |
| Bsp13I | TCCGGA | 1 cut(s) | 365 |
| Bsp143I | GATC | 7 cut(s) | 255, 405, 454, 637, 867, 1116, 1164 |
| Bsp19I | CCATGG | 1 cut(s) | 288 |
| BspANI | GGCC | 5 cut(s) | 30, 39, 381, 746, 1030 |
| BspCNI | CTCAG | 4 cut(s) | 364, 460, 615, 982 |
| BspEI | TCCGGA | 1 cut(s) | 365 |
| BspFNI | CGCG | 1 cut(s) | 311 |
| BspHI | TCATGA | 2 cut(s) | 399, 721 |
| BspLI | GGNNCC | 2 cut(s) | 59, 119 |
| BspPI | GGATC | 4 cut(s) | 449, 632, 1111, 1172 |
| BspT107I | GGYRCC | 2 cut(s) | 57, 117 |
| BspTI | CTTAAG | 2 cut(s) | 698, 818 |
| BsrBI | CCGCTC | 1 cut(s) | 348 |
| BsrI | ACTGG | 2 cut(s) | 747, 919 |
| BssECI | CCNNGG | 6 cut(s) | 34, 43, 121, 288, 393, 686 |
| BssMI | GATC | 7 cut(s) | 255, 405, 454, 637, 867, 1116, 1164 |
| BssNI | GRCGYC | 2 cut(s) | 118, 135 |
| BssT1I | CCWWGG | 3 cut(s) | 43, 121, 288 |
| Bst2UI | CCWGG | 2 cut(s) | 36, 1027 |
| Bst4CI | ACNGT | 3 cut(s) | 532, 618, 687 |
| Bst6I | CTCTTC | 2 cut(s) | 256, 354 |
| BstACI | GRCGYC | 2 cut(s) | 118, 135 |
| BstAFI | CTTAAG | 2 cut(s) | 698, 818 |
| BstBAI | YACGTR | 2 cut(s) | 1129, 1147 |
| BstC8I | GCNNGC | 2 cut(s) | 116, 770 |
| BstDEI | CTNAG | 4 cut(s) | 351, 468, 623, 990 |
| BstDSI | CCRYGG | 3 cut(s) | 288, 393, 686 |
| BstF5I | GGATG | 3 cut(s) | 178, 697, 710 |
| BstFNI | CGCG | 1 cut(s) | 311 |
| BstH2I | RGCGCY | 1 cut(s) | 121 |
| BstHHI | GCGC | 3 cut(s) | 120, 313, 816 |
| BstKTI | GATC | 7 cut(s) | 258, 408, 457, 640, 870, 1119, 1167 |
| BstMAI | GTCTC | 5 cut(s) | 142, 253, 443, 833, 988 |
| BstMBI | GATC | 7 cut(s) | 255, 405, 454, 637, 867, 1116, 1164 |
| BstMCI | CGRYCG | 3 cut(s) | 31, 258, 382 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 36, 39, 132 |
| BstNI | CCWGG | 2 cut(s) | 36, 1027 |
| BstNSI | RCATGY | 2 cut(s) | 811, 828 |
| BstSCI | CCNGG | 4 cut(s) | 34, 376, 1025, 1034 |
| BstSFI | CTRYAG | 1 cut(s) | 1212 |
| BstUI | CGCG | 1 cut(s) | 311 |
| BstV1I | GCAGC | 1 cut(s) | 55 |
| BstV2I | GAAGAC | 1 cut(s) | 677 |
| BstZI | CGGCCG | 2 cut(s) | 28, 379 |
| BsuRI | GGCC | 5 cut(s) | 30, 39, 381, 746, 1030 |
| BtgI | CCRYGG | 3 cut(s) | 288, 393, 686 |
| BtrI | CACGTC | 1 cut(s) | 1111 |
| BtsCI | GGATG | 3 cut(s) | 178, 697, 710 |
| BtsI | GCAGTG | 3 cut(s) | 173, 371, 552 |
| BtsIMutI | CAGTG | 5 cut(s) | 19, 173, 371, 552, 758 |
| Cac8I | GCNNGC | 2 cut(s) | 116, 770 |
| CciI | TCATGA | 2 cut(s) | 399, 721 |
| CfoI | GCGC | 3 cut(s) | 120, 313, 816 |
| Cfr13I | GGNCC | 2 cut(s) | 243, 1029 |
| CpoI | CGGWCCG | 1 cut(s) | 243 |
| CseI | GACGC | 1 cut(s) | 124 |
| Csp6I | GTAC | 3 cut(s) | 502, 658, 1239 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 820, 855 |
| CspI | CGGWCCG | 1 cut(s) | 243 |
| CviAII | CATG | 8 cut(s) | 289, 400, 722, 808, 825, 1138, 1159, 1208 |
| CviQI | GTAC | 3 cut(s) | 502, 658, 1239 |
| DdeI | CTNAG | 4 cut(s) | 351, 468, 623, 990 |
| DinI | GGCGCC | 1 cut(s) | 119 |
| DpnI | GATC | 7 cut(s) | 257, 407, 456, 639, 869, 1118, 1166 |
| DpnII | GATC | 7 cut(s) | 255, 405, 454, 637, 867, 1116, 1164 |
| DraIII | CACNNNGTG | 1 cut(s) | 1147 |
| EaeI | YGGCCR | 3 cut(s) | 28, 379, 744 |
| EagI | CGGCCG | 2 cut(s) | 28, 379 |
| Eam1104I | CTCTTC | 2 cut(s) | 256, 354 |
| EarI | CTCTTC | 2 cut(s) | 256, 354 |
| EciI | GGCGGA | 1 cut(s) | 141 |
| EclXI | CGGCCG | 2 cut(s) | 28, 379 |
| Eco130I | CCWWGG | 3 cut(s) | 43, 121, 288 |
| Eco47I | GGWCC | 1 cut(s) | 243 |
| Eco52I | CGGCCG | 2 cut(s) | 28, 379 |
| Eco57I | CTGAAG | 3 cut(s) | 177, 647, 882 |
| Eco72I | CACGTG | 2 cut(s) | 1129, 1147 |
| Eco88I | CYCGRG | 2 cut(s) | 433, 1052 |
| EcoRII | CCWGG | 2 cut(s) | 34, 1025 |
| EcoT14I | CCWWGG | 3 cut(s) | 43, 121, 288 |
| EgeI | GGCGCC | 1 cut(s) | 119 |
| EheI | GGCGCC | 1 cut(s) | 119 |
| ErhI | CCWWGG | 3 cut(s) | 43, 121, 288 |
| Esp3I | CGTCTC | 2 cut(s) | 142, 253 |
| FaeI | CATG | 8 cut(s) | 292, 403, 725, 811, 828, 1141, 1162, 1211 |
| FaqI | GGGAC | 2 cut(s) | 1051, 1169 |
| FatI | CATG | 8 cut(s) | 288, 399, 721, 807, 824, 1137, 1158, 1207 |
| FauI | CCCGC | 2 cut(s) | 107, 286 |
| Fnu4HI | GCNGC | 5 cut(s) | 31, 40, 56, 69, 382 |
| FokI | GGATG | 3 cut(s) | 165, 704, 717 |
| Fsp4HI | GCNGC | 5 cut(s) | 31, 40, 56, 69, 382 |
| FspBI | CTAG | 5 cut(s) | 44, 122, 420, 642, 911 |
| GlaI | GCGC | 3 cut(s) | 119, 312, 815 |
| GluI | GCNGC | 5 cut(s) | 31, 40, 56, 69, 382 |
| GsaI | CCCAGC | 2 cut(s) | 54, 655 |
| GsuI | CTGGAG | 1 cut(s) | 184 |
| HaeII | RGCGCY | 1 cut(s) | 121 |
| HaeIII | GGCC | 5 cut(s) | 30, 39, 381, 746, 1030 |
| HapII | CCGG | 4 cut(s) | 241, 366, 378, 1035 |
| HgaI | GACGC | 1 cut(s) | 124 |
| HhaI | GCGC | 3 cut(s) | 120, 313, 816 |
| Hin1I | GRCGYC | 2 cut(s) | 118, 135 |
| Hin1II | CATG | 8 cut(s) | 292, 403, 725, 811, 828, 1141, 1162, 1211 |
| Hin6I | GCGC | 3 cut(s) | 118, 311, 814 |
| HinP1I | GCGC | 3 cut(s) | 118, 311, 814 |
| HincII | GTYRAC | 1 cut(s) | 1197 |
| HindII | GTYRAC | 1 cut(s) | 1197 |
| HinfI | GANTC | 8 cut(s) | 362, 410, 436, 485, 762, 877, 948, 1223 |
| HpaII | CCGG | 4 cut(s) | 241, 366, 378, 1035 |
| HphI | GGTGA | 4 cut(s) | 219, 274, 311, 610 |
| Hpy166II | GTNNAC | 3 cut(s) | 302, 414, 1197 |
| Hpy188I | TCNGA | 3 cut(s) | 105, 520, 624 |
| Hpy188III | TCNNGA | 6 cut(s) | 323, 366, 400, 722, 1012, 1052 |
| Hpy8I | GTNNAC | 3 cut(s) | 302, 414, 1197 |
| HpyAV | CCTTC | 5 cut(s) | 174, 201, 289, 671, 837 |
| HpyCH4III | ACNGT | 3 cut(s) | 532, 618, 687 |
| HpyCH4IV | ACGT | 3 cut(s) | 1110, 1128, 1146 |
| HpyCH4V | TGCA | 5 cut(s) | 178, 982, 1097, 1141, 1182 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 36, 39, 132 |
| HpyF3I | CTNAG | 4 cut(s) | 351, 468, 623, 990 |
| HpySE526I | ACGT | 3 cut(s) | 1110, 1128, 1146 |
| Hsp92I | GRCGYC | 2 cut(s) | 118, 135 |
| Hsp92II | CATG | 8 cut(s) | 292, 403, 725, 811, 828, 1141, 1162, 1211 |
| HspAI | GCGC | 3 cut(s) | 118, 311, 814 |
| KasI | GGCGCC | 1 cut(s) | 117 |
| Kpn2I | TCCGGA | 1 cut(s) | 365 |
| Kzo9I | GATC | 7 cut(s) | 255, 405, 454, 637, 867, 1116, 1164 |
| LmnI | GCTCC | 3 cut(s) | 47, 147, 738 |
| Lsp1109I | GCAGC | 1 cut(s) | 55 |
| LweI | GCATC | 3 cut(s) | 187, 682, 1169 |
| MaeI | CTAG | 5 cut(s) | 44, 122, 420, 642, 911 |
| MaeII | ACGT | 3 cut(s) | 1110, 1128, 1146 |
| MalI | GATC | 7 cut(s) | 257, 407, 456, 639, 869, 1118, 1166 |
| MbiI | CCGCTC | 1 cut(s) | 348 |
| MboI | GATC | 7 cut(s) | 255, 405, 454, 637, 867, 1116, 1164 |
| MboII | GAAGA | 5 cut(s) | 243, 371, 415, 682, 869 |
| MluCI | AATT | 4 cut(s) | 264, 832, 1047, 1060 |
| Mly113I | GGCGCC | 1 cut(s) | 118 |
| MlyI | GAGTC | 5 cut(s) | 371, 419, 445, 479, 871 |
| MmeI | TCCRAC | 2 cut(s) | 482, 909 |
| MnlI | CCTC | 9 cut(s) | 71, 193, 208, 216, 295, 618, 796, 997, 1048 |
| MroI | TCCGGA | 1 cut(s) | 365 |
| MseI | TTAA | 4 cut(s) | 699, 819, 959, 968 |
| MslI | CAYNNNNRTG | 1 cut(s) | 287 |
| MspA1I | CMGCKG | 1 cut(s) | 68 |
| MspCI | CTTAAG | 2 cut(s) | 698, 818 |
| MspI | CCGG | 4 cut(s) | 241, 366, 378, 1035 |
| MspR9I | CCNGG | 4 cut(s) | 36, 378, 1027, 1036 |
| Mva1269I | GAATGC | 1 cut(s) | 384 |
| MvaI | CCWGG | 2 cut(s) | 36, 1027 |
| MvnI | CGCG | 1 cut(s) | 311 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 36, 39, 132 |
| NarI | GGCGCC | 1 cut(s) | 118 |
| NciI | CCSGG | 2 cut(s) | 378, 1036 |
| NcoI | CCATGG | 1 cut(s) | 288 |
| NdeII | GATC | 7 cut(s) | 255, 405, 454, 637, 867, 1116, 1164 |
| NlaIII | CATG | 8 cut(s) | 292, 403, 725, 811, 828, 1141, 1162, 1211 |
| NlaIV | GGNNCC | 2 cut(s) | 59, 119 |
| NmeAIII | GCCGAG | 1 cut(s) | 6 |
| NspI | RCATGY | 2 cut(s) | 811, 828 |
| PaeR7I | CTCGAG | 2 cut(s) | 433, 1052 |
| PagI | TCATGA | 2 cut(s) | 399, 721 |
| PciI | ACATGT | 1 cut(s) | 807 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 146 |
| PctI | GAATGC | 1 cut(s) | 384 |
| PfeI | GAWTC | 3 cut(s) | 762, 948, 1223 |
| PkrI | GCNGC | 5 cut(s) | 32, 41, 57, 70, 383 |
| Ple19I | CGATCG | 1 cut(s) | 258 |
| PleI | GAGTC | 5 cut(s) | 370, 418, 444, 479, 871 |
| PluTI | GGCGCC | 1 cut(s) | 121 |
| PmaCI | CACGTG | 2 cut(s) | 1129, 1147 |
| PmlI | CACGTG | 2 cut(s) | 1129, 1147 |
| PpsI | GAGTC | 5 cut(s) | 370, 418, 444, 479, 871 |
| Ppu21I | YACGTR | 2 cut(s) | 1129, 1147 |
| PscI | ACATGT | 1 cut(s) | 807 |
| Psp6I | CCWGG | 2 cut(s) | 34, 1025 |
| PspCI | CACGTG | 2 cut(s) | 1129, 1147 |
| PspFI | CCCAGC | 2 cut(s) | 50, 651 |
| PspGI | CCWGG | 2 cut(s) | 34, 1025 |
| PspN4I | GGNNCC | 2 cut(s) | 59, 119 |
| PspPI | GGNCC | 2 cut(s) | 243, 1029 |
| PspXI | VCTCGAGB | 1 cut(s) | 433 |
| PvuI | CGATCG | 1 cut(s) | 258 |
| RsaI | GTAC | 3 cut(s) | 503, 659, 1240 |
| RsaNI | GTAC | 3 cut(s) | 502, 658, 1239 |
| RseI | CAYNNNNRTG | 1 cut(s) | 287 |
| Rsr2I | CGGWCCG | 1 cut(s) | 243 |
| RsrII | CGGWCCG | 1 cut(s) | 243 |
| SaqAI | TTAA | 4 cut(s) | 699, 819, 959, 968 |
| SatI | GCNGC | 5 cut(s) | 31, 40, 56, 69, 382 |
| Sau3AI | GATC | 7 cut(s) | 255, 405, 454, 637, 867, 1116, 1164 |
| Sau96I | GGNCC | 2 cut(s) | 243, 1029 |
| SchI | GAGTC | 5 cut(s) | 371, 419, 445, 479, 871 |
| ScrFI | CCNGG | 4 cut(s) | 36, 378, 1027, 1036 |
| SfaNI | GCATC | 3 cut(s) | 187, 682, 1169 |
| SfcI | CTRYAG | 1 cut(s) | 1212 |
| SfiI | GGCCNNNNNGGCC | 1 cut(s) | 36 |
| SfoI | GGCGCC | 1 cut(s) | 119 |
| Sfr274I | CTCGAG | 2 cut(s) | 433, 1052 |
| SinI | GGWCC | 1 cut(s) | 243 |
| SlaI | CTCGAG | 2 cut(s) | 433, 1052 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 287 |
| SmlI | CTYRAG | 5 cut(s) | 433, 497, 698, 818, 1052 |
| SmoI | CTYRAG | 5 cut(s) | 433, 497, 698, 818, 1052 |
| Sse9I | AATT | 4 cut(s) | 264, 832, 1047, 1060 |
| SspDI | GGCGCC | 1 cut(s) | 117 |
| SspMI | CTAG | 5 cut(s) | 44, 122, 420, 642, 911 |
| StyD4I | CCNGG | 4 cut(s) | 34, 376, 1025, 1034 |
| StyI | CCWWGG | 3 cut(s) | 43, 121, 288 |
| TaaI | ACNGT | 3 cut(s) | 532, 618, 687 |
| TaiI | ACGT | 3 cut(s) | 1113, 1131, 1149 |
| TaqI | TCGA | 8 cut(s) | 254, 336, 357, 388, 408, 434, 463, 1053 |
| TasI | AATT | 4 cut(s) | 264, 832, 1047, 1060 |
| TauI | GCSGC | 4 cut(s) | 33, 42, 58, 384 |
| TfiI | GAWTC | 3 cut(s) | 762, 948, 1223 |
| Tru1I | TTAA | 4 cut(s) | 699, 819, 959, 968 |
| Tru9I | TTAA | 4 cut(s) | 699, 819, 959, 968 |
| TscAI | CASTG | 5 cut(s) | 19, 180, 378, 559, 758 |
| TseI | GCWGC | 1 cut(s) | 68 |
| TspDTI | ATGAA | 7 cut(s) | 416, 597, 710, 1088, 1202, 1215, 1217 |
| TspGWI | ACGGA | 2 cut(s) | 134, 235 |
| TspRI | CASTG | 5 cut(s) | 19, 180, 378, 559, 758 |
| Vha464I | CTTAAG | 2 cut(s) | 698, 818 |
| VpaK11BI | GGWCC | 1 cut(s) | 243 |
| XapI | RAATTY | 2 cut(s) | 264, 1047 |
| XceI | RCATGY | 2 cut(s) | 811, 828 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1144 |
| XhoI | CTCGAG | 2 cut(s) | 433, 1052 |
| XmaJI | CCTAGG | 2 cut(s) | 43, 121 |
| XspI | CTAG | 5 cut(s) | 44, 122, 420, 642, 911 |