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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 2 cut(s) | 409, 506 |
| AciI | CCGC | 8 cut(s) | 48, 55, 65, 75, 168, 306, 454, 658 |
| AclWI | GGATC | 3 cut(s) | 16, 143, 201 |
| AcoI | YGGCCR | 1 cut(s) | 128 |
| AfaI | GTAC | 1 cut(s) | 63 |
| AfeI | AGCGCT | 1 cut(s) | 277 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 31, 185, 329 |
| AgsI | TTSAA | 1 cut(s) | 340 |
| AluBI | AGCT | 1 cut(s) | 462 |
| AluI | AGCT | 1 cut(s) | 462 |
| AlwI | GGATC | 3 cut(s) | 16, 143, 201 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 210 |
| Ama87I | CYCGRG | 1 cut(s) | 185 |
| Aor51HI | AGCGCT | 1 cut(s) | 277 |
| AspLEI | GCGC | 4 cut(s) | 108, 121, 278, 411 |
| AspS9I | GGNCC | 7 cut(s) | 16, 188, 248, 552, 568, 627, 660 |
| AsuC2I | CCSGG | 2 cut(s) | 186, 187 |
| AvaI | CYCGRG | 1 cut(s) | 185 |
| BanII | GRGCYC | 1 cut(s) | 75 |
| BccI | CCATC | 2 cut(s) | 237, 476 |
| BceAI | ACGGC | 1 cut(s) | 30 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 445, 479, 605, 639 |
| BcnI | CCSGG | 2 cut(s) | 186, 187 |
| BfmI | CTRYAG | 1 cut(s) | 279 |
| BfoI | RGCGCY | 2 cut(s) | 109, 279 |
| Bme1390I | CCNGG | 2 cut(s) | 186, 187 |
| BmeT110I | CYCGRG | 1 cut(s) | 185 |
| BmgT120I | GGNCC | 7 cut(s) | 16, 188, 248, 552, 568, 627, 660 |
| BmiI | GGNNCC | 2 cut(s) | 72, 172 |
| BmrFI | CCNGG | 2 cut(s) | 186, 187 |
| BmsI | GCATC | 1 cut(s) | 107 |
| BpmI | CTGGAG | 2 cut(s) | 89, 271 |
| BpuMI | CCSGG | 2 cut(s) | 186, 187 |
| BsaJI | CCNNGG | 2 cut(s) | 185, 244 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 31, 185, 329 |
| Bse118I | RCCGGY | 1 cut(s) | 126 |
| BseDI | CCNNGG | 2 cut(s) | 185, 244 |
| BseGI | GGATG | 3 cut(s) | 98, 229, 269 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 31, 185, 329 |
| BseYI | CCCAGC | 5 cut(s) | 83, 102, 255, 397, 424 |
| Bsh1236I | CGCG | 2 cut(s) | 409, 506 |
| Bsh1285I | CGRYCG | 1 cut(s) | 378 |
| BsiEI | CGRYCG | 1 cut(s) | 378 |
| BsiHKCI | CYCGRG | 1 cut(s) | 185 |
| BsiSI | CCGG | 4 cut(s) | 32, 127, 186, 352 |
| BslFI | GGGAC | 1 cut(s) | 407 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 31, 185, 329 |
| BsmFI | GGGAC | 1 cut(s) | 407 |
| BsoBI | CYCGRG | 1 cut(s) | 185 |
| Bsp1286I | GDGCHC | 1 cut(s) | 75 |
| Bsp143I | GATC | 5 cut(s) | 21, 148, 206, 327, 375 |
| BspACI | CCGC | 8 cut(s) | 48, 55, 65, 75, 168, 306, 454, 658 |
| BspFNI | CGCG | 2 cut(s) | 409, 506 |
| BspLI | GGNNCC | 2 cut(s) | 72, 172 |
| BspMAI | CTGCAG | 1 cut(s) | 283 |
| BspPI | GGATC | 3 cut(s) | 16, 143, 201 |
| BsrFI | RCCGGY | 1 cut(s) | 126 |
| BssAI | RCCGGY | 1 cut(s) | 126 |
| BssECI | CCNNGG | 2 cut(s) | 185, 244 |
| BssMI | GATC | 5 cut(s) | 21, 148, 206, 327, 375 |
| Bst4CI | ACNGT | 2 cut(s) | 226, 421 |
| Bst6I | CTCTTC | 2 cut(s) | 341, 484 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 165 |
| BstC8I | GCNNGC | 5 cut(s) | 48, 75, 89, 293, 618 |
| BstF5I | GGATG | 3 cut(s) | 98, 229, 269 |
| BstFNI | CGCG | 2 cut(s) | 409, 506 |
| BstH2I | RGCGCY | 2 cut(s) | 109, 279 |
| BstHHI | GCGC | 4 cut(s) | 108, 121, 278, 411 |
| BstKTI | GATC | 5 cut(s) | 24, 151, 209, 330, 378 |
| BstMBI | GATC | 5 cut(s) | 21, 148, 206, 327, 375 |
| BstMCI | CGRYCG | 1 cut(s) | 378 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 79, 88, 127, 165, 246, 314 |
| BstSCI | CCNGG | 2 cut(s) | 184, 185 |
| BstSFI | CTRYAG | 1 cut(s) | 279 |
| BstUI | CGCG | 2 cut(s) | 409, 506 |
| BstX2I | RGATCY | 3 cut(s) | 21, 148, 206 |
| BstYI | RGATCY | 3 cut(s) | 21, 148, 206 |
| BtsCI | GGATG | 3 cut(s) | 98, 229, 269 |
| Cac8I | GCNNGC | 5 cut(s) | 48, 75, 89, 293, 618 |
| CaiI | CAGNNNCTG | 1 cut(s) | 210 |
| CfoI | GCGC | 4 cut(s) | 108, 121, 278, 411 |
| Cfr10I | RCCGGY | 1 cut(s) | 126 |
| Cfr13I | GGNCC | 7 cut(s) | 16, 188, 248, 552, 568, 627, 660 |
| Cfr9I | CCCGGG | 1 cut(s) | 185 |
| Csp6I | GTAC | 1 cut(s) | 62 |
| CviAII | CATG | 3 cut(s) | 140, 310, 655 |
| CviQI | GTAC | 1 cut(s) | 62 |
| DpnI | GATC | 5 cut(s) | 23, 150, 208, 329, 377 |
| DpnII | GATC | 5 cut(s) | 21, 148, 206, 327, 375 |
| EaeI | YGGCCR | 1 cut(s) | 128 |
| Eam1104I | CTCTTC | 2 cut(s) | 341, 484 |
| EarI | CTCTTC | 2 cut(s) | 341, 484 |
| EciI | GGCGGA | 1 cut(s) | 295 |
| Eco147I | AGGCCT | 1 cut(s) | 620 |
| Eco24I | GRGCYC | 1 cut(s) | 75 |
| Eco47III | AGCGCT | 1 cut(s) | 277 |
| Eco88I | CYCGRG | 1 cut(s) | 185 |
| EcoT38I | GRGCYC | 1 cut(s) | 75 |
| FaeI | CATG | 3 cut(s) | 143, 313, 658 |
| FaiI | YATR | 3 cut(s) | 141, 311, 656 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 605, 637 |
| FaqI | GGGAC | 1 cut(s) | 407 |
| FatI | CATG | 3 cut(s) | 139, 309, 654 |
| FauI | CCCGC | 4 cut(s) | 55, 62, 82, 461 |
| FokI | GGATG | 3 cut(s) | 85, 216, 256 |
| FriOI | GRGCYC | 1 cut(s) | 75 |
| GlaI | GCGC | 4 cut(s) | 107, 120, 277, 410 |
| GsaI | CCCAGC | 5 cut(s) | 87, 106, 259, 401, 428 |
| GsuI | CTGGAG | 2 cut(s) | 89, 271 |
| HaeII | RGCGCY | 2 cut(s) | 109, 279 |
| HapII | CCGG | 4 cut(s) | 32, 127, 186, 352 |
| HhaI | GCGC | 4 cut(s) | 108, 121, 278, 411 |
| Hin1II | CATG | 3 cut(s) | 143, 313, 658 |
| Hin6I | GCGC | 4 cut(s) | 106, 119, 276, 409 |
| HinP1I | GCGC | 4 cut(s) | 106, 119, 276, 409 |
| HpaII | CCGG | 4 cut(s) | 32, 127, 186, 352 |
| Hpy188I | TCNGA | 1 cut(s) | 153 |
| Hpy188III | TCNNGA | 1 cut(s) | 482 |
| HpyAV | CCTTC | 4 cut(s) | 35, 273, 502, 559 |
| HpyCH4III | ACNGT | 2 cut(s) | 226, 421 |
| HpyCH4V | TGCA | 8 cut(s) | 98, 113, 143, 218, 240, 281, 439, 477 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 79, 88, 127, 165, 246, 314 |
| Hsp92II | CATG | 3 cut(s) | 143, 313, 658 |
| HspAI | GCGC | 4 cut(s) | 106, 119, 276, 409 |
| Kzo9I | GATC | 5 cut(s) | 21, 148, 206, 327, 375 |
| LmnI | GCTCC | 2 cut(s) | 70, 176 |
| LweI | GCATC | 1 cut(s) | 107 |
| MalI | GATC | 5 cut(s) | 23, 150, 208, 329, 377 |
| MboI | GATC | 5 cut(s) | 21, 148, 206, 327, 375 |
| MboII | GAAGA | 6 cut(s) | 20, 328, 340, 501, 510, 526 |
| MflI | RGATCY | 3 cut(s) | 21, 148, 206 |
| MhlI | GDGCHC | 1 cut(s) | 75 |
| MspA1I | CMGCKG | 1 cut(s) | 67 |
| MspI | CCGG | 4 cut(s) | 32, 127, 186, 352 |
| MspR9I | CCNGG | 2 cut(s) | 186, 187 |
| MvnI | CGCG | 2 cut(s) | 409, 506 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 79, 88, 127, 165, 246, 314 |
| NciI | CCSGG | 2 cut(s) | 186, 187 |
| NdeII | GATC | 5 cut(s) | 21, 148, 206, 327, 375 |
| NlaIII | CATG | 3 cut(s) | 143, 313, 658 |
| NlaIV | GGNNCC | 2 cut(s) | 72, 172 |
| NmeAIII | GCCGAG | 1 cut(s) | 225 |
| PceI | AGGCCT | 1 cut(s) | 620 |
| Ple19I | CGATCG | 1 cut(s) | 378 |
| PspFI | CCCAGC | 5 cut(s) | 83, 102, 255, 397, 424 |
| PspN4I | GGNNCC | 2 cut(s) | 72, 172 |
| PspPI | GGNCC | 7 cut(s) | 16, 188, 248, 552, 568, 627, 660 |
| PstI | CTGCAG | 1 cut(s) | 283 |
| PstNI | CAGNNNCTG | 1 cut(s) | 210 |
| PsuI | RGATCY | 3 cut(s) | 21, 148, 206 |
| PvuI | CGATCG | 1 cut(s) | 378 |
| RsaI | GTAC | 1 cut(s) | 63 |
| RsaNI | GTAC | 1 cut(s) | 62 |
| Sau3AI | GATC | 5 cut(s) | 21, 148, 206, 327, 375 |
| Sau96I | GGNCC | 7 cut(s) | 16, 188, 248, 552, 568, 627, 660 |
| ScrFI | CCNGG | 2 cut(s) | 186, 187 |
| SduI | GDGCHC | 1 cut(s) | 75 |
| SetI | ASST | 3 cut(s) | 246, 265, 464 |
| SfaNI | GCATC | 1 cut(s) | 107 |
| SfcI | CTRYAG | 1 cut(s) | 279 |
| SmaI | CCCGGG | 1 cut(s) | 187 |
| SseBI | AGGCCT | 1 cut(s) | 620 |
| SsiI | CCGC | 8 cut(s) | 48, 55, 65, 75, 168, 306, 454, 658 |
| StuI | AGGCCT | 1 cut(s) | 620 |
| StyD4I | CCNGG | 2 cut(s) | 184, 185 |
| TaaI | ACNGT | 2 cut(s) | 226, 421 |
| TauI | GCSGC | 2 cut(s) | 171, 661 |
| TspGWI | ACGGA | 1 cut(s) | 153 |
| TspMI | CCCGGG | 1 cut(s) | 185 |
| XmaI | CCCGGG | 1 cut(s) | 185 |