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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 4 cut(s) | 81, 217, 318, 359 |
| Acc36I | ACCTGC | 4 cut(s) | 81, 217, 318, 359 |
| AccBSI | CCGCTC | 1 cut(s) | 305 |
| AccII | CGCG | 2 cut(s) | 42, 184 |
| AciI | CCGC | 5 cut(s) | 92, 182, 184, 303, 760 |
| AclI | AACGTT | 1 cut(s) | 741 |
| AclWI | GGATC | 7 cut(s) | 53, 139, 161, 191, 434, 626, 856 |
| AcoI | YGGCCR | 1 cut(s) | 262 |
| AcsI | RAATTY | 3 cut(s) | 788, 826, 1041 |
| AcuI | CTGAAG | 2 cut(s) | 641, 876 |
| AfaI | GTAC | 1 cut(s) | 488 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 91, 496, 646 |
| AflII | CTTAAG | 1 cut(s) | 692 |
| AgsI | TTSAA | 5 cut(s) | 367, 664, 793, 955, 1009 |
| AjiI | CACGTC | 1 cut(s) | 821 |
| AjnI | CCWGG | 2 cut(s) | 284, 1019 |
| AluBI | AGCT | 1 cut(s) | 961 |
| AluI | AGCT | 1 cut(s) | 961 |
| Alw26I | GTCTC | 1 cut(s) | 525 |
| AlwI | GGATC | 7 cut(s) | 53, 139, 161, 191, 434, 626, 856 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 351 |
| AoxI | GGCC | 5 cut(s) | 19, 185, 262, 287, 1022 |
| ApeKI | GCWGC | 6 cut(s) | 4, 99, 102, 329, 354, 375 |
| ApoI | RAATTY | 3 cut(s) | 788, 826, 1041 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 654 |
| AspLEI | GCGC | 4 cut(s) | 44, 54, 218, 810 |
| AspS9I | GGNCC | 1 cut(s) | 578 |
| AsuHPI | GGTGA | 3 cut(s) | 16, 299, 604 |
| AsuNHI | GCTAGC | 1 cut(s) | 212 |
| AvaII | GGWCC | 1 cut(s) | 578 |
| BaeGI | GKGCMC | 1 cut(s) | 156 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 470, 503 |
| BbsI | GAAGAC | 4 cut(s) | 271, 435, 671, 875 |
| BbvI | GCAGC | 6 cut(s) | 16, 86, 114, 341, 366, 387 |
| BccI | CCATC | 5 cut(s) | 180, 298, 326, 554, 569 |
| BciT130I | CCWGG | 2 cut(s) | 286, 1021 |
| BclI | TGATCA | 1 cut(s) | 963 |
| BcoDI | GTCTC | 1 cut(s) | 525 |
| BfaI | CTAG | 3 cut(s) | 213, 636, 905 |
| BfmI | CTRYAG | 2 cut(s) | 100, 352 |
| BfrI | CTTAAG | 1 cut(s) | 692 |
| BfuAI | ACCTGC | 4 cut(s) | 81, 217, 318, 359 |
| BisI | GCNGC | 8 cut(s) | 5, 100, 103, 185, 303, 330, 355, 376 |
| BlsI | GCNGC | 8 cut(s) | 6, 101, 104, 186, 304, 331, 356, 377 |
| Bme1390I | CCNGG | 2 cut(s) | 286, 1021 |
| Bme18I | GGWCC | 1 cut(s) | 578 |
| BmgBI | CACGTC | 1 cut(s) | 821 |
| BmgT120I | GGNCC | 1 cut(s) | 578 |
| BmrFI | CCNGG | 2 cut(s) | 286, 1021 |
| BmrI | ACTGGG | 1 cut(s) | 143 |
| BmsI | GCATC | 2 cut(s) | 227, 676 |
| BmtI | GCTAGC | 1 cut(s) | 216 |
| BmuI | ACTGGG | 1 cut(s) | 143 |
| BpiI | GAAGAC | 4 cut(s) | 271, 435, 671, 875 |
| BpmI | CTGGAG | 4 cut(s) | 222, 268, 282, 944 |
| BpuEI | CTTGAG | 1 cut(s) | 503 |
| BsaBI | GATNNNNATC | 1 cut(s) | 171 |
| BsaJI | CCNNGG | 1 cut(s) | 182 |
| BsaWI | WCCGGW | 1 cut(s) | 135 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 91, 496, 646 |
| Bse118I | RCCGGY | 2 cut(s) | 17, 371 |
| Bse1I | ACTGG | 2 cut(s) | 149, 913 |
| Bse3DI | GCAATG | 1 cut(s) | 722 |
| Bse8I | GATNNNNATC | 1 cut(s) | 171 |
| BseBI | CCWGG | 2 cut(s) | 286, 1021 |
| BseDI | CCNNGG | 1 cut(s) | 182 |
| BseGI | GGATG | 1 cut(s) | 691 |
| BseJI | GATNNNNATC | 1 cut(s) | 171 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 91, 496, 646 |
| BseMI | GCAATG | 1 cut(s) | 722 |
| BseMII | CTCAG | 3 cut(s) | 171, 444, 975 |
| BseNI | ACTGG | 2 cut(s) | 149, 913 |
| BseRI | GAGGAG | 1 cut(s) | 225 |
| BseSI | GKGCMC | 1 cut(s) | 156 |
| BseX3I | CGGCCG | 1 cut(s) | 262 |
| BseXI | GCAGC | 6 cut(s) | 16, 86, 114, 341, 366, 387 |
| BseYI | CCCAGC | 5 cut(s) | 109, 126, 200, 339, 344 |
| BsgI | GTGCAG | 1 cut(s) | 59 |
| Bsh1236I | CGCG | 2 cut(s) | 42, 184 |
| Bsh1285I | CGRYCG | 1 cut(s) | 265 |
| BshFI | GGCC | 5 cut(s) | 21, 187, 264, 289, 1024 |
| BsiEI | CGRYCG | 1 cut(s) | 265 |
| BsiSI | CCGG | 4 cut(s) | 18, 136, 265, 372 |
| BslFI | GGGAC | 2 cut(s) | 711, 1045 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 91, 496, 646 |
| BsmAI | GTCTC | 1 cut(s) | 525 |
| BsmFI | GGGAC | 2 cut(s) | 711, 1045 |
| BsnI | GGCC | 5 cut(s) | 21, 187, 264, 289, 1024 |
| Bsp1286I | GDGCHC | 1 cut(s) | 156 |
| Bsp143I | GATC | 9 cut(s) | 58, 144, 166, 196, 228, 439, 631, 861, 963 |
| BspACI | CCGC | 5 cut(s) | 92, 182, 184, 303, 760 |
| BspANI | GGCC | 5 cut(s) | 21, 187, 264, 289, 1024 |
| BspCNI | CTCAG | 3 cut(s) | 170, 445, 976 |
| BspFNI | CGCG | 2 cut(s) | 42, 184 |
| BspHI | TCATGA | 1 cut(s) | 715 |
| BspMAI | CTGCAG | 2 cut(s) | 104, 356 |
| BspMI | ACCTGC | 4 cut(s) | 81, 217, 318, 359 |
| BspOI | GCTAGC | 1 cut(s) | 216 |
| BspPI | GGATC | 7 cut(s) | 53, 139, 161, 191, 434, 626, 856 |
| BspTI | CTTAAG | 1 cut(s) | 692 |
| BsrBI | CCGCTC | 1 cut(s) | 305 |
| BsrDI | GCAATG | 1 cut(s) | 722 |
| BsrFI | RCCGGY | 2 cut(s) | 17, 371 |
| BsrI | ACTGG | 2 cut(s) | 149, 913 |
| BssAI | RCCGGY | 2 cut(s) | 17, 371 |
| BssECI | CCNNGG | 1 cut(s) | 182 |
| BssMI | GATC | 9 cut(s) | 58, 144, 166, 196, 228, 439, 631, 861, 963 |
| Bst2UI | CCWGG | 2 cut(s) | 286, 1021 |
| Bst4CI | ACNGT | 1 cut(s) | 582 |
| BstAFI | CTTAAG | 1 cut(s) | 692 |
| BstC8I | GCNNGC | 5 cut(s) | 19, 78, 214, 373, 764 |
| BstDEI | CTNAG | 4 cut(s) | 157, 453, 984, 1047 |
| BstDSI | CCRYGG | 1 cut(s) | 182 |
| BstF5I | GGATG | 1 cut(s) | 691 |
| BstFNI | CGCG | 2 cut(s) | 42, 184 |
| BstHHI | GCGC | 4 cut(s) | 44, 54, 218, 810 |
| BstKTI | GATC | 9 cut(s) | 61, 147, 169, 199, 231, 442, 634, 864, 966 |
| BstMAI | GTCTC | 1 cut(s) | 525 |
| BstMBI | GATC | 9 cut(s) | 58, 144, 166, 196, 228, 439, 631, 861, 963 |
| BstMCI | CGRYCG | 1 cut(s) | 265 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 119, 239, 354 |
| BstNI | CCWGG | 2 cut(s) | 286, 1021 |
| BstSCI | CCNGG | 2 cut(s) | 284, 1019 |
| BstSFI | CTRYAG | 2 cut(s) | 100, 352 |
| BstSLI | GKGCMC | 1 cut(s) | 156 |
| BstUI | CGCG | 2 cut(s) | 42, 184 |
| BstV1I | GCAGC | 6 cut(s) | 16, 86, 114, 341, 366, 387 |
| BstV2I | GAAGAC | 4 cut(s) | 271, 435, 671, 875 |
| BstX2I | RGATCY | 1 cut(s) | 144 |
| BstYI | RGATCY | 1 cut(s) | 144 |
| BstZI | CGGCCG | 1 cut(s) | 262 |
| BsuRI | GGCC | 5 cut(s) | 21, 187, 264, 289, 1024 |
| BtgI | CCRYGG | 1 cut(s) | 182 |
| BtrI | CACGTC | 1 cut(s) | 821 |
| BtsCI | GGATG | 1 cut(s) | 691 |
| BtsI | GCAGTG | 1 cut(s) | 537 |
| BtsIMutI | CAGTG | 4 cut(s) | 156, 537, 558, 752 |
| BveI | ACCTGC | 4 cut(s) | 81, 217, 318, 359 |
| Cac8I | GCNNGC | 5 cut(s) | 19, 78, 214, 373, 764 |
| CaiI | CAGNNNCTG | 1 cut(s) | 351 |
| CciI | TCATGA | 1 cut(s) | 715 |
| CfoI | GCGC | 4 cut(s) | 44, 54, 218, 810 |
| Cfr10I | RCCGGY | 2 cut(s) | 17, 371 |
| Cfr13I | GGNCC | 1 cut(s) | 578 |
| Cfr42I | CCGCGG | 1 cut(s) | 185 |
| CseI | GACGC | 1 cut(s) | 148 |
| Csp6I | GTAC | 1 cut(s) | 487 |
| CviAII | CATG | 2 cut(s) | 433, 716 |
| CviQI | GTAC | 1 cut(s) | 487 |
| DdeI | CTNAG | 4 cut(s) | 157, 453, 984, 1047 |
| DpnI | GATC | 9 cut(s) | 60, 146, 168, 198, 230, 441, 633, 863, 965 |
| DpnII | GATC | 9 cut(s) | 58, 144, 166, 196, 228, 439, 631, 861, 963 |
| EaeI | YGGCCR | 1 cut(s) | 262 |
| EagI | CGGCCG | 1 cut(s) | 262 |
| EciI | GGCGGA | 1 cut(s) | 749 |
| EclXI | CGGCCG | 1 cut(s) | 262 |
| Eco147I | AGGCCT | 1 cut(s) | 1024 |
| Eco47I | GGWCC | 1 cut(s) | 578 |
| Eco52I | CGGCCG | 1 cut(s) | 262 |
| Eco57I | CTGAAG | 2 cut(s) | 641, 876 |
| EcoRI | GAATTC | 1 cut(s) | 788 |
| EcoRII | CCWGG | 2 cut(s) | 284, 1019 |
| FaeI | CATG | 2 cut(s) | 436, 719 |
| FaqI | GGGAC | 2 cut(s) | 711, 1045 |
| FatI | CATG | 2 cut(s) | 432, 715 |
| FauI | CCCGC | 1 cut(s) | 189 |
| FbaI | TGATCA | 1 cut(s) | 963 |
| Fnu4HI | GCNGC | 8 cut(s) | 5, 100, 103, 185, 303, 330, 355, 376 |
| FokI | GGATG | 1 cut(s) | 698 |
| Fsp4HI | GCNGC | 8 cut(s) | 5, 100, 103, 185, 303, 330, 355, 376 |
| FspBI | CTAG | 3 cut(s) | 213, 636, 905 |
| GlaI | GCGC | 4 cut(s) | 43, 53, 217, 809 |
| GluI | GCNGC | 8 cut(s) | 5, 100, 103, 185, 303, 330, 355, 376 |
| GsaI | CCCAGC | 5 cut(s) | 113, 130, 204, 343, 348 |
| GsuI | CTGGAG | 4 cut(s) | 222, 268, 282, 944 |
| HaeIII | GGCC | 5 cut(s) | 21, 187, 264, 289, 1024 |
| HapII | CCGG | 4 cut(s) | 18, 136, 265, 372 |
| HgaI | GACGC | 1 cut(s) | 148 |
| HhaI | GCGC | 4 cut(s) | 44, 54, 218, 810 |
| Hin1II | CATG | 2 cut(s) | 436, 719 |
| Hin6I | GCGC | 4 cut(s) | 42, 52, 216, 808 |
| HinP1I | GCGC | 4 cut(s) | 42, 52, 216, 808 |
| HinfI | GANTC | 5 cut(s) | 246, 395, 470, 871, 942 |
| HpaII | CCGG | 4 cut(s) | 18, 136, 265, 372 |
| HphI | GGTGA | 3 cut(s) | 16, 299, 604 |
| Hpy166II | GTNNAC | 1 cut(s) | 163 |
| Hpy188I | TCNGA | 6 cut(s) | 63, 400, 475, 505, 551, 586 |
| Hpy188III | TCNNGA | 2 cut(s) | 716, 865 |
| Hpy8I | GTNNAC | 1 cut(s) | 163 |
| HpyAV | CCTTC | 2 cut(s) | 283, 665 |
| HpyCH4III | ACNGT | 1 cut(s) | 582 |
| HpyCH4IV | ACGT | 4 cut(s) | 643, 700, 741, 820 |
| HpyCH4V | TGCA | 6 cut(s) | 4, 76, 102, 313, 354, 976 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 119, 239, 354 |
| HpyF3I | CTNAG | 4 cut(s) | 157, 453, 984, 1047 |
| HpySE526I | ACGT | 4 cut(s) | 643, 700, 741, 820 |
| Hsp92II | CATG | 2 cut(s) | 436, 719 |
| HspAI | GCGC | 4 cut(s) | 42, 52, 216, 808 |
| KroI | GCCGGC | 2 cut(s) | 17, 371 |
| KroNI | GCCGGC | 2 cut(s) | 19, 373 |
| Ksp22I | TGATCA | 1 cut(s) | 963 |
| KspI | CCGCGG | 1 cut(s) | 185 |
| Kzo9I | GATC | 9 cut(s) | 58, 144, 166, 196, 228, 439, 631, 861, 963 |
| LmnI | GCTCC | 2 cut(s) | 238, 732 |
| Lsp1109I | GCAGC | 6 cut(s) | 16, 86, 114, 341, 366, 387 |
| LweI | GCATC | 2 cut(s) | 227, 676 |
| MaeI | CTAG | 3 cut(s) | 213, 636, 905 |
| MaeII | ACGT | 4 cut(s) | 643, 700, 741, 820 |
| MalI | GATC | 9 cut(s) | 60, 146, 168, 198, 230, 441, 633, 863, 965 |
| MbiI | CCGCTC | 1 cut(s) | 305 |
| MboI | GATC | 9 cut(s) | 58, 144, 166, 196, 228, 439, 631, 861, 963 |
| MboII | GAAGA | 9 cut(s) | 271, 285, 431, 434, 437, 440, 676, 863, 880 |
| MflI | RGATCY | 1 cut(s) | 144 |
| MhlI | GDGCHC | 1 cut(s) | 156 |
| MluCI | AATT | 6 cut(s) | 256, 677, 788, 826, 897, 1041 |
| MlyI | GAGTC | 2 cut(s) | 404, 865 |
| MmeI | TCCRAC | 2 cut(s) | 86, 467 |
| MroNI | GCCGGC | 2 cut(s) | 17, 371 |
| MroXI | GAANNNNTTC | 1 cut(s) | 654 |
| MseI | TTAA | 2 cut(s) | 608, 693 |
| MspA1I | CMGCKG | 1 cut(s) | 184 |
| MspCI | CTTAAG | 1 cut(s) | 692 |
| MspI | CCGG | 4 cut(s) | 18, 136, 265, 372 |
| MspR9I | CCNGG | 2 cut(s) | 286, 1021 |
| MvaI | CCWGG | 2 cut(s) | 286, 1021 |
| MvnI | CGCG | 2 cut(s) | 42, 184 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 119, 239, 354 |
| NaeI | GCCGGC | 2 cut(s) | 19, 373 |
| NdeII | GATC | 9 cut(s) | 58, 144, 166, 196, 228, 439, 631, 861, 963 |
| NgoMIV | GCCGGC | 2 cut(s) | 17, 371 |
| NheI | GCTAGC | 1 cut(s) | 212 |
| NlaIII | CATG | 2 cut(s) | 436, 719 |
| PagI | TCATGA | 1 cut(s) | 715 |
| PaqCI | CACCTGC | 4 cut(s) | 81, 217, 318, 359 |
| PceI | AGGCCT | 1 cut(s) | 1024 |
| PdiI | GCCGGC | 2 cut(s) | 19, 373 |
| PdmI | GAANNNNTTC | 1 cut(s) | 654 |
| PfeI | GAWTC | 3 cut(s) | 246, 470, 942 |
| PkrI | GCNGC | 8 cut(s) | 6, 101, 104, 186, 304, 331, 356, 377 |
| PleI | GAGTC | 2 cut(s) | 403, 865 |
| PpsI | GAGTC | 2 cut(s) | 403, 865 |
| Psp1406I | AACGTT | 1 cut(s) | 741 |
| Psp6I | CCWGG | 2 cut(s) | 284, 1019 |
| PspFI | CCCAGC | 5 cut(s) | 109, 126, 200, 339, 344 |
| PspGI | CCWGG | 2 cut(s) | 284, 1019 |
| PspPI | GGNCC | 1 cut(s) | 578 |
| PstI | CTGCAG | 2 cut(s) | 104, 356 |
| PstNI | CAGNNNCTG | 1 cut(s) | 351 |
| PsuI | RGATCY | 1 cut(s) | 144 |
| RsaI | GTAC | 1 cut(s) | 488 |
| RsaNI | GTAC | 1 cut(s) | 487 |
| SacII | CCGCGG | 1 cut(s) | 185 |
| SaqAI | TTAA | 2 cut(s) | 608, 693 |
| SatI | GCNGC | 8 cut(s) | 5, 100, 103, 185, 303, 330, 355, 376 |
| Sau3AI | GATC | 9 cut(s) | 58, 144, 166, 196, 228, 439, 631, 861, 963 |
| Sau96I | GGNCC | 1 cut(s) | 578 |
| SchI | GAGTC | 2 cut(s) | 404, 865 |
| ScrFI | CCNGG | 2 cut(s) | 286, 1021 |
| SduI | GDGCHC | 1 cut(s) | 156 |
| SfaNI | GCATC | 2 cut(s) | 227, 676 |
| SfcI | CTRYAG | 2 cut(s) | 100, 352 |
| Sfr303I | CCGCGG | 1 cut(s) | 185 |
| SgrBI | CCGCGG | 1 cut(s) | 185 |
| SinI | GGWCC | 1 cut(s) | 578 |
| SmlI | CTYRAG | 2 cut(s) | 482, 692 |
| SmoI | CTYRAG | 2 cut(s) | 482, 692 |
| Sse9I | AATT | 6 cut(s) | 256, 677, 788, 826, 897, 1041 |
| SseBI | AGGCCT | 1 cut(s) | 1024 |
| SsiI | CCGC | 5 cut(s) | 92, 182, 184, 303, 760 |
| SspMI | CTAG | 3 cut(s) | 213, 636, 905 |
| StuI | AGGCCT | 1 cut(s) | 1024 |
| StyD4I | CCNGG | 2 cut(s) | 284, 1019 |
| TaaI | ACNGT | 1 cut(s) | 582 |
| TaiI | ACGT | 4 cut(s) | 646, 703, 744, 823 |
| TaqI | TCGA | 2 cut(s) | 195, 448 |
| TasI | AATT | 6 cut(s) | 256, 677, 788, 826, 897, 1041 |
| TauI | GCSGC | 2 cut(s) | 187, 305 |
| TfiI | GAWTC | 3 cut(s) | 246, 470, 942 |
| Tru1I | TTAA | 2 cut(s) | 608, 693 |
| Tru9I | TTAA | 2 cut(s) | 608, 693 |
| TscAI | CASTG | 4 cut(s) | 156, 544, 565, 752 |
| TseI | GCWGC | 6 cut(s) | 4, 99, 102, 329, 354, 375 |
| TspDTI | ATGAA | 3 cut(s) | 704, 768, 801 |
| TspGWI | ACGGA | 1 cut(s) | 492 |
| TspRI | CASTG | 4 cut(s) | 156, 544, 565, 752 |
| Vha464I | CTTAAG | 1 cut(s) | 692 |
| VpaK11BI | GGWCC | 1 cut(s) | 578 |
| XapI | RAATTY | 3 cut(s) | 788, 826, 1041 |
| XmnI | GAANNNNTTC | 1 cut(s) | 654 |
| XspI | CTAG | 3 cut(s) | 213, 636, 905 |