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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 1037 |
| AatII | GACGTC | 2 cut(s) | 27, 1041 |
| Acc16I | TGCGCA | 1 cut(s) | 200 |
| AccB1I | GGYRCC | 3 cut(s) | 587, 767, 788 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 750 |
| AccBSI | CCGCTC | 1 cut(s) | 794 |
| AccII | CGCG | 1 cut(s) | 888 |
| AccIII | TCCGGA | 1 cut(s) | 601 |
| AciI | CCGC | 7 cut(s) | 134, 513, 726, 771, 786, 792, 909 |
| AclWI | GGATC | 6 cut(s) | 102, 113, 182, 218, 451, 660 |
| AcoI | YGGCCR | 1 cut(s) | 736 |
| AcsI | RAATTY | 2 cut(s) | 17, 597 |
| AcuI | CTGAAG | 1 cut(s) | 429 |
| AcvI | CACGTG | 1 cut(s) | 680 |
| AcyI | GRCGYC | 5 cut(s) | 24, 33, 754, 789, 1038 |
| AfaI | GTAC | 3 cut(s) | 43, 50, 742 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 58, 322, 750, 785 |
| AgeI | ACCGGT | 1 cut(s) | 764 |
| AgsI | TTSAA | 4 cut(s) | 17, 349, 968, 985 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 871 |
| AleI | CACNNNNGTG | 1 cut(s) | 696 |
| AluBI | AGCT | 5 cut(s) | 374, 384, 449, 638, 882 |
| AluI | AGCT | 5 cut(s) | 374, 384, 449, 638, 882 |
| Alw21I | GWGCWC | 1 cut(s) | 386 |
| Alw26I | GTCTC | 3 cut(s) | 67, 98, 753 |
| AlwI | GGATC | 6 cut(s) | 102, 113, 182, 218, 451, 660 |
| Ama87I | CYCGRG | 1 cut(s) | 711 |
| Aor13HI | TCCGGA | 1 cut(s) | 601 |
| AoxI | GGCC | 2 cut(s) | 736, 775 |
| ApeKI | GCWGC | 2 cut(s) | 449, 808 |
| ApoI | RAATTY | 2 cut(s) | 17, 597 |
| AsiGI | ACCGGT | 1 cut(s) | 764 |
| AspLEI | GCGC | 3 cut(s) | 201, 791, 890 |
| AspS9I | GGNCC | 3 cut(s) | 776, 858, 865 |
| AsuC2I | CCSGG | 1 cut(s) | 592 |
| AsuHPI | GGTGA | 1 cut(s) | 1033 |
| AvaI | CYCGRG | 1 cut(s) | 711 |
| AvaII | GGWCC | 2 cut(s) | 858, 865 |
| BanI | GGYRCC | 3 cut(s) | 587, 767, 788 |
| BanII | GRGCYC | 1 cut(s) | 386 |
| BbrPI | CACGTG | 1 cut(s) | 680 |
| Bbv12I | GWGCWC | 1 cut(s) | 386 |
| BbvI | GCAGC | 2 cut(s) | 436, 820 |
| BccI | CCATC | 3 cut(s) | 60, 830, 928 |
| BceAI | ACGGC | 1 cut(s) | 723 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 797, 831 |
| BclI | TGATCA | 2 cut(s) | 555, 562 |
| BcnI | CCSGG | 1 cut(s) | 592 |
| BcoDI | GTCTC | 3 cut(s) | 67, 98, 753 |
| BfaI | CTAG | 3 cut(s) | 138, 705, 1048 |
| BfmI | CTRYAG | 1 cut(s) | 582 |
| BfoI | RGCGCY | 1 cut(s) | 792 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 783 |
| BglII | AGATCT | 1 cut(s) | 232 |
| BisI | GCNGC | 8 cut(s) | 450, 514, 727, 771, 787, 792, 809, 909 |
| BlsI | GCNGC | 8 cut(s) | 451, 515, 728, 772, 788, 793, 810, 910 |
| Bme1390I | CCNGG | 1 cut(s) | 592 |
| Bme18I | GGWCC | 2 cut(s) | 858, 865 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 871 |
| BmeT110I | CYCGRG | 1 cut(s) | 711 |
| BmgT120I | GGNCC | 3 cut(s) | 776, 858, 865 |
| BmiI | GGNNCC | 6 cut(s) | 132, 589, 769, 778, 790, 859 |
| BmrFI | CCNGG | 1 cut(s) | 592 |
| BmsI | GCATC | 3 cut(s) | 232, 397, 1012 |
| Bpu10I | CCTNAGC | 1 cut(s) | 90 |
| BpuEI | CTTGAG | 1 cut(s) | 500 |
| BpuMI | CCSGG | 1 cut(s) | 592 |
| Bsa29I | ATCGAT | 1 cut(s) | 186 |
| BsaAI | YACGTR | 1 cut(s) | 680 |
| BsaBI | GATNNNNATC | 1 cut(s) | 123 |
| BsaHI | GRCGYC | 5 cut(s) | 24, 33, 754, 789, 1038 |
| BsaI | GGTCTC | 2 cut(s) | 67, 98 |
| BsaJI | CCNNGG | 4 cut(s) | 37, 780, 800, 861 |
| BsaWI | WCCGGW | 3 cut(s) | 601, 624, 764 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 58, 322, 750, 785 |
| Bse118I | RCCGGY | 3 cut(s) | 764, 773, 1043 |
| Bse1I | ACTGG | 1 cut(s) | 875 |
| Bse8I | GATNNNNATC | 1 cut(s) | 123 |
| BseAI | TCCGGA | 1 cut(s) | 601 |
| BseCI | ATCGAT | 1 cut(s) | 186 |
| BseDI | CCNNGG | 4 cut(s) | 37, 780, 800, 861 |
| BseGI | GGATG | 2 cut(s) | 247, 313 |
| BseJI | GATNNNNATC | 1 cut(s) | 123 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 58, 322, 750, 785 |
| BseMII | CTCAG | 3 cut(s) | 36, 170, 371 |
| BseNI | ACTGG | 1 cut(s) | 875 |
| BseRI | GAGGAG | 2 cut(s) | 786, 789 |
| BseXI | GCAGC | 2 cut(s) | 436, 820 |
| BseYI | CCCAGC | 1 cut(s) | 303 |
| Bsh1236I | CGCG | 1 cut(s) | 888 |
| BshFI | GGCC | 2 cut(s) | 738, 777 |
| BshNI | GGYRCC | 3 cut(s) | 587, 767, 788 |
| BshTI | ACCGGT | 1 cut(s) | 764 |
| BshVI | ATCGAT | 1 cut(s) | 186 |
| BsiHKAI | GWGCWC | 1 cut(s) | 386 |
| BsiHKCI | CYCGRG | 1 cut(s) | 711 |
| BsiSI | CCGG | 6 cut(s) | 592, 602, 625, 765, 774, 1044 |
| BslFI | GGGAC | 1 cut(s) | 729 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 58, 322, 750, 785 |
| BsmAI | GTCTC | 3 cut(s) | 67, 98, 753 |
| BsmFI | GGGAC | 1 cut(s) | 729 |
| BsnI | GGCC | 2 cut(s) | 738, 777 |
| Bso31I | GGTCTC | 2 cut(s) | 67, 98 |
| BsoBI | CYCGRG | 1 cut(s) | 711 |
| Bsp1286I | GDGCHC | 1 cut(s) | 386 |
| Bsp13I | TCCGGA | 1 cut(s) | 601 |
| Bsp19I | CCATGG | 1 cut(s) | 37 |
| BspACI | CCGC | 7 cut(s) | 134, 513, 726, 771, 786, 792, 909 |
| BspANI | GGCC | 2 cut(s) | 738, 777 |
| BspCNI | CTCAG | 3 cut(s) | 37, 169, 372 |
| BspDI | ATCGAT | 1 cut(s) | 186 |
| BspEI | TCCGGA | 1 cut(s) | 601 |
| BspFNI | CGCG | 1 cut(s) | 888 |
| BspHI | TCATGA | 1 cut(s) | 462 |
| BspLI | GGNNCC | 6 cut(s) | 132, 589, 769, 778, 790, 859 |
| BspPI | GGATC | 6 cut(s) | 102, 113, 182, 218, 451, 660 |
| BspQI | GCTCTTC | 1 cut(s) | 826 |
| BspT107I | GGYRCC | 3 cut(s) | 587, 767, 788 |
| BspTNI | GGTCTC | 2 cut(s) | 67, 98 |
| BsrBI | CCGCTC | 1 cut(s) | 794 |
| BsrFI | RCCGGY | 3 cut(s) | 764, 773, 1043 |
| BsrI | ACTGG | 1 cut(s) | 875 |
| BssAI | RCCGGY | 3 cut(s) | 764, 773, 1043 |
| BssECI | CCNNGG | 4 cut(s) | 37, 780, 800, 861 |
| BssNI | GRCGYC | 5 cut(s) | 24, 33, 754, 789, 1038 |
| BssT1I | CCWWGG | 3 cut(s) | 37, 780, 861 |
| Bst4CI | ACNGT | 2 cut(s) | 207, 698 |
| Bst6I | CTCTTC | 1 cut(s) | 826 |
| BstACI | GRCGYC | 5 cut(s) | 24, 33, 754, 789, 1038 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 574 |
| BstBAI | YACGTR | 1 cut(s) | 680 |
| BstC8I | GCNNGC | 4 cut(s) | 301, 775, 813, 817 |
| BstDEI | CTNAG | 6 cut(s) | 45, 90, 156, 380, 453, 1018 |
| BstDSI | CCRYGG | 1 cut(s) | 37 |
| BstF5I | GGATG | 2 cut(s) | 247, 313 |
| BstFNI | CGCG | 1 cut(s) | 888 |
| BstH2I | RGCGCY | 1 cut(s) | 792 |
| BstHHI | GCGC | 3 cut(s) | 201, 791, 890 |
| BstMAI | GTCTC | 3 cut(s) | 67, 98, 753 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 574, 735, 783 |
| BstNSI | RCATGY | 1 cut(s) | 815 |
| BstSCI | CCNGG | 1 cut(s) | 590 |
| BstSFI | CTRYAG | 1 cut(s) | 582 |
| BstUI | CGCG | 1 cut(s) | 888 |
| BstV1I | GCAGC | 2 cut(s) | 436, 820 |
| BstX2I | RGATCY | 3 cut(s) | 94, 232, 456 |
| BstYI | RGATCY | 3 cut(s) | 94, 232, 456 |
| Bsu15I | ATCGAT | 1 cut(s) | 186 |
| BsuRI | GGCC | 2 cut(s) | 738, 777 |
| BsuTUI | ATCGAT | 1 cut(s) | 186 |
| BtgI | CCRYGG | 1 cut(s) | 37 |
| BtgZI | GCGATG | 1 cut(s) | 70 |
| BtsCI | GGATG | 2 cut(s) | 247, 313 |
| BtsI | GCAGTG | 1 cut(s) | 194 |
| BtsIMutI | CAGTG | 3 cut(s) | 194, 868, 948 |
| Cac8I | GCNNGC | 4 cut(s) | 301, 775, 813, 817 |
| CciI | TCATGA | 1 cut(s) | 462 |
| CfoI | GCGC | 3 cut(s) | 201, 791, 890 |
| Cfr10I | RCCGGY | 3 cut(s) | 764, 773, 1043 |
| Cfr13I | GGNCC | 3 cut(s) | 776, 858, 865 |
| ClaI | ATCGAT | 1 cut(s) | 186 |
| CseI | GACGC | 4 cut(s) | 41, 532, 566, 743 |
| Csp6I | GTAC | 3 cut(s) | 42, 49, 741 |
| CspAI | ACCGGT | 1 cut(s) | 764 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 835, 870 |
| CviAII | CATG | 7 cut(s) | 38, 166, 387, 415, 463, 750, 812 |
| CviQI | GTAC | 3 cut(s) | 42, 49, 741 |
| DdeI | CTNAG | 6 cut(s) | 45, 90, 156, 380, 453, 1018 |
| DinI | GGCGCC | 1 cut(s) | 790 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1037 |
| DriI | GACNNNNNGTC | 1 cut(s) | 871 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1037 |
| EaeI | YGGCCR | 1 cut(s) | 736 |
| Eam1104I | CTCTTC | 1 cut(s) | 826 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 871 |
| EarI | CTCTTC | 1 cut(s) | 826 |
| Ecl136II | GAGCTC | 1 cut(s) | 384 |
| Eco130I | CCWWGG | 3 cut(s) | 37, 780, 861 |
| Eco24I | GRGCYC | 1 cut(s) | 386 |
| Eco31I | GGTCTC | 2 cut(s) | 67, 98 |
| Eco47I | GGWCC | 2 cut(s) | 858, 865 |
| Eco53kI | GAGCTC | 1 cut(s) | 384 |
| Eco57I | CTGAAG | 1 cut(s) | 429 |
| Eco72I | CACGTG | 1 cut(s) | 680 |
| Eco88I | CYCGRG | 1 cut(s) | 711 |
| EcoICRI | GAGCTC | 1 cut(s) | 384 |
| EcoT14I | CCWWGG | 3 cut(s) | 37, 780, 861 |
| EcoT38I | GRGCYC | 1 cut(s) | 386 |
| EgeI | GGCGCC | 1 cut(s) | 790 |
| EheI | GGCGCC | 1 cut(s) | 790 |
| ErhI | CCWWGG | 3 cut(s) | 37, 780, 861 |
| FaeI | CATG | 7 cut(s) | 41, 169, 390, 418, 466, 753, 815 |
| FaqI | GGGAC | 1 cut(s) | 729 |
| FatI | CATG | 7 cut(s) | 37, 165, 386, 414, 462, 749, 811 |
| FbaI | TGATCA | 2 cut(s) | 555, 562 |
| Fnu4HI | GCNGC | 8 cut(s) | 450, 514, 727, 771, 787, 792, 809, 909 |
| FokI | GGATG | 2 cut(s) | 254, 320 |
| FriOI | GRGCYC | 1 cut(s) | 386 |
| Fsp4HI | GCNGC | 8 cut(s) | 450, 514, 727, 771, 787, 792, 809, 909 |
| FspBI | CTAG | 3 cut(s) | 138, 705, 1048 |
| FspI | TGCGCA | 1 cut(s) | 200 |
| GlaI | GCGC | 3 cut(s) | 200, 790, 889 |
| GluI | GCNGC | 8 cut(s) | 450, 514, 727, 771, 787, 792, 809, 909 |
| GsaI | CCCAGC | 1 cut(s) | 307 |
| HaeII | RGCGCY | 1 cut(s) | 792 |
| HaeIII | GGCC | 2 cut(s) | 738, 777 |
| HapII | CCGG | 6 cut(s) | 592, 602, 625, 765, 774, 1044 |
| HgaI | GACGC | 4 cut(s) | 41, 532, 566, 743 |
| HhaI | GCGC | 3 cut(s) | 201, 791, 890 |
| Hin1I | GRCGYC | 5 cut(s) | 24, 33, 754, 789, 1038 |
| Hin1II | CATG | 7 cut(s) | 41, 169, 390, 418, 466, 753, 815 |
| Hin6I | GCGC | 3 cut(s) | 199, 789, 888 |
| HinP1I | GCGC | 3 cut(s) | 199, 789, 888 |
| HinfI | GANTC | 3 cut(s) | 393, 605, 685 |
| HpaII | CCGG | 6 cut(s) | 592, 602, 625, 765, 774, 1044 |
| HphI | GGTGA | 1 cut(s) | 1033 |
| Hpy166II | GTNNAC | 1 cut(s) | 486 |
| Hpy188I | TCNGA | 6 cut(s) | 67, 99, 317, 642, 804, 1015 |
| Hpy188III | TCNNGA | 7 cut(s) | 122, 128, 397, 433, 463, 602, 758 |
| Hpy8I | GTNNAC | 1 cut(s) | 486 |
| Hpy99I | CGWCG | 2 cut(s) | 35, 759 |
| HpyAV | CCTTC | 6 cut(s) | 91, 182, 328, 448, 453, 991 |
| HpyCH4III | ACNGT | 2 cut(s) | 207, 698 |
| HpyCH4IV | ACGT | 3 cut(s) | 24, 679, 1038 |
| HpyCH4V | TGCA | 4 cut(s) | 621, 677, 846, 896 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 574, 735, 783 |
| HpyF3I | CTNAG | 6 cut(s) | 45, 90, 156, 380, 453, 1018 |
| HpySE526I | ACGT | 3 cut(s) | 24, 679, 1038 |
| Hsp92I | GRCGYC | 5 cut(s) | 24, 33, 754, 789, 1038 |
| Hsp92II | CATG | 7 cut(s) | 41, 169, 390, 418, 466, 753, 815 |
| HspAI | GCGC | 3 cut(s) | 199, 789, 888 |
| KasI | GGCGCC | 1 cut(s) | 788 |
| Kpn2I | TCCGGA | 1 cut(s) | 601 |
| KroI | GCCGGC | 1 cut(s) | 773 |
| KroNI | GCCGGC | 1 cut(s) | 775 |
| Ksp22I | TGATCA | 2 cut(s) | 555, 562 |
| LguI | GCTCTTC | 1 cut(s) | 826 |
| LmnI | GCTCC | 4 cut(s) | 288, 643, 799, 895 |
| Lsp1109I | GCAGC | 2 cut(s) | 436, 820 |
| LweI | GCATC | 3 cut(s) | 232, 397, 1012 |
| MaeI | CTAG | 3 cut(s) | 138, 705, 1048 |
| MaeII | ACGT | 3 cut(s) | 24, 679, 1038 |
| MaeIII | GTNAC | 2 cut(s) | 976, 1039 |
| MbiI | CCGCTC | 1 cut(s) | 794 |
| MboII | GAAGA | 3 cut(s) | 551, 813, 816 |
| MfeI | CAATTG | 1 cut(s) | 616 |
| MflI | RGATCY | 3 cut(s) | 94, 232, 456 |
| MhlI | GDGCHC | 1 cut(s) | 386 |
| MluCI | AATT | 8 cut(s) | 17, 294, 571, 597, 610, 616, 929, 943 |
| Mly113I | GGCGCC | 1 cut(s) | 789 |
| MlyI | GAGTC | 1 cut(s) | 402 |
| MmeI | TCCRAC | 1 cut(s) | 340 |
| MnlI | CCTC | 6 cut(s) | 38, 470, 489, 712, 807, 810 |
| MroI | TCCGGA | 1 cut(s) | 601 |
| MroNI | GCCGGC | 1 cut(s) | 773 |
| MseI | TTAA | 1 cut(s) | 518 |
| MslI | CAYNNNNRTG | 2 cut(s) | 663, 696 |
| MspA1I | CMGCKG | 1 cut(s) | 449 |
| MspI | CCGG | 6 cut(s) | 592, 602, 625, 765, 774, 1044 |
| MspR9I | CCNGG | 1 cut(s) | 592 |
| MunI | CAATTG | 1 cut(s) | 616 |
| MvnI | CGCG | 1 cut(s) | 888 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 574, 735, 783 |
| NaeI | GCCGGC | 1 cut(s) | 775 |
| NarI | GGCGCC | 1 cut(s) | 789 |
| NciI | CCSGG | 1 cut(s) | 592 |
| NcoI | CCATGG | 1 cut(s) | 37 |
| NgoMIV | GCCGGC | 1 cut(s) | 773 |
| NlaIII | CATG | 7 cut(s) | 41, 169, 390, 418, 466, 753, 815 |
| NlaIV | GGNNCC | 6 cut(s) | 132, 589, 769, 778, 790, 859 |
| NmuCI | GTSAC | 1 cut(s) | 1039 |
| NsbI | TGCGCA | 1 cut(s) | 200 |
| NspI | RCATGY | 1 cut(s) | 815 |
| OliI | CACNNNNGTG | 1 cut(s) | 696 |
| PaeI | GCATGC | 1 cut(s) | 815 |
| PagI | TCATGA | 1 cut(s) | 462 |
| PciSI | GCTCTTC | 1 cut(s) | 826 |
| PdiI | GCCGGC | 1 cut(s) | 775 |
| PfeI | GAWTC | 2 cut(s) | 605, 685 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 750 |
| PinAI | ACCGGT | 1 cut(s) | 764 |
| PkrI | GCNGC | 8 cut(s) | 451, 515, 728, 772, 788, 793, 810, 910 |
| PleI | GAGTC | 1 cut(s) | 401 |
| PluTI | GGCGCC | 1 cut(s) | 792 |
| PmaCI | CACGTG | 1 cut(s) | 680 |
| PmlI | CACGTG | 1 cut(s) | 680 |
| PpsI | GAGTC | 1 cut(s) | 401 |
| Ppu21I | YACGTR | 1 cut(s) | 680 |
| Psp124BI | GAGCTC | 1 cut(s) | 386 |
| PspCI | CACGTG | 1 cut(s) | 680 |
| PspFI | CCCAGC | 1 cut(s) | 303 |
| PspN4I | GGNNCC | 6 cut(s) | 132, 589, 769, 778, 790, 859 |
| PspPI | GGNCC | 3 cut(s) | 776, 858, 865 |
| PsuI | RGATCY | 3 cut(s) | 94, 232, 456 |
| PvuII | CAGCTG | 1 cut(s) | 449 |
| RsaI | GTAC | 3 cut(s) | 43, 50, 742 |
| RsaNI | GTAC | 3 cut(s) | 42, 49, 741 |
| RseI | CAYNNNNRTG | 2 cut(s) | 663, 696 |
| SacI | GAGCTC | 1 cut(s) | 386 |
| SapI | GCTCTTC | 1 cut(s) | 826 |
| SaqAI | TTAA | 1 cut(s) | 518 |
| SatI | GCNGC | 8 cut(s) | 450, 514, 727, 771, 787, 792, 809, 909 |
| Sau96I | GGNCC | 3 cut(s) | 776, 858, 865 |
| SchI | GAGTC | 1 cut(s) | 402 |
| ScrFI | CCNGG | 1 cut(s) | 592 |
| SduI | GDGCHC | 1 cut(s) | 386 |
| SfaNI | GCATC | 3 cut(s) | 232, 397, 1012 |
| SfcI | CTRYAG | 1 cut(s) | 582 |
| SfoI | GGCGCC | 1 cut(s) | 790 |
| SgrAI | CRCCGGYG | 1 cut(s) | 764 |
| SinI | GGWCC | 2 cut(s) | 858, 865 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 663, 696 |
| SmlI | CTYRAG | 1 cut(s) | 479 |
| SmoI | CTYRAG | 1 cut(s) | 479 |
| SphI | GCATGC | 1 cut(s) | 815 |
| Sse9I | AATT | 8 cut(s) | 17, 294, 571, 597, 610, 616, 929, 943 |
| SsiI | CCGC | 7 cut(s) | 134, 513, 726, 771, 786, 792, 909 |
| SspDI | GGCGCC | 1 cut(s) | 788 |
| SspMI | CTAG | 3 cut(s) | 138, 705, 1048 |
| SstI | GAGCTC | 1 cut(s) | 386 |
| StyD4I | CCNGG | 1 cut(s) | 590 |
| StyI | CCWWGG | 3 cut(s) | 37, 780, 861 |
| TaaI | ACNGT | 2 cut(s) | 207, 698 |
| TaiI | ACGT | 3 cut(s) | 27, 682, 1041 |
| TaqI | TCGA | 7 cut(s) | 30, 186, 275, 396, 420, 434, 757 |
| TaqII | GACCGA | 1 cut(s) | 116 |
| TasI | AATT | 8 cut(s) | 17, 294, 571, 597, 610, 616, 929, 943 |
| TauI | GCSGC | 6 cut(s) | 516, 729, 773, 789, 794, 911 |
| TfiI | GAWTC | 2 cut(s) | 605, 685 |
| Tru1I | TTAA | 1 cut(s) | 518 |
| Tru9I | TTAA | 1 cut(s) | 518 |
| TscAI | CASTG | 3 cut(s) | 201, 875, 955 |
| TseFI | GTSAC | 1 cut(s) | 1039 |
| TseI | GCWGC | 2 cut(s) | 449, 808 |
| Tsp45I | GTSAC | 1 cut(s) | 1039 |
| TspDTI | ATGAA | 4 cut(s) | 73, 324, 479, 681 |
| TspRI | CASTG | 3 cut(s) | 201, 875, 955 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 750 |
| VpaK11BI | GGWCC | 2 cut(s) | 858, 865 |
| XapI | RAATTY | 2 cut(s) | 17, 597 |
| XceI | RCATGY | 1 cut(s) | 815 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 234 |
| XspI | CTAG | 3 cut(s) | 138, 705, 1048 |
| ZraI | GACGTC | 2 cut(s) | 25, 1039 |