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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 213 |
| AccII | CGCG | 1 cut(s) | 210 |
| AccIII | TCCGGA | 1 cut(s) | 60 |
| AciI | CCGC | 6 cut(s) | 129, 175, 178, 208, 261, 285 |
| AcuI | CTGAAG | 1 cut(s) | 386 |
| AfaI | GTAC | 2 cut(s) | 233, 398 |
| AfeI | AGCGCT | 1 cut(s) | 193 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 87, 184, 241, 391 |
| AgsI | TTSAA | 1 cut(s) | 409 |
| AjnI | CCWGG | 1 cut(s) | 143 |
| Aor13HI | TCCGGA | 1 cut(s) | 60 |
| Aor51HI | AGCGCT | 1 cut(s) | 193 |
| AoxI | GGCC | 2 cut(s) | 89, 146 |
| ApeKI | GCWGC | 2 cut(s) | 77, 158 |
| AspLEI | GCGC | 1 cut(s) | 194 |
| AsuHPI | GGTGA | 1 cut(s) | 349 |
| AsuNHI | GCTAGC | 1 cut(s) | 188 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 215, 248 |
| BbsI | GAAGAC | 2 cut(s) | 101, 416 |
| BbvCI | CCTCAGC | 1 cut(s) | 203 |
| BbvI | GCAGC | 2 cut(s) | 64, 145 |
| BccI | CCATC | 3 cut(s) | 103, 243, 299 |
| BciT130I | CCWGG | 1 cut(s) | 145 |
| BfaI | CTAG | 1 cut(s) | 189 |
| BfmI | CTRYAG | 1 cut(s) | 159 |
| BfoI | RGCGCY | 1 cut(s) | 195 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 269 |
| BisI | GCNGC | 4 cut(s) | 78, 159, 178, 208 |
| BlsI | GCNGC | 4 cut(s) | 79, 160, 179, 209 |
| Bme1390I | CCNGG | 1 cut(s) | 145 |
| BmrFI | CCNGG | 1 cut(s) | 145 |
| BmsI | GCATC | 1 cut(s) | 421 |
| BmtI | GCTAGC | 1 cut(s) | 192 |
| BpiI | GAAGAC | 2 cut(s) | 101, 416 |
| Bpu10I | CCTNAGC | 1 cut(s) | 203 |
| BpuEI | CTTGAG | 1 cut(s) | 248 |
| BsaBI | GATNNNNATC | 1 cut(s) | 56 |
| BsaWI | WCCGGW | 2 cut(s) | 60, 100 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 87, 184, 241, 391 |
| Bse8I | GATNNNNATC | 1 cut(s) | 56 |
| BseAI | TCCGGA | 1 cut(s) | 60 |
| BseBI | CCWGG | 1 cut(s) | 145 |
| BseGI | GGATG | 2 cut(s) | 135, 436 |
| BseJI | GATNNNNATC | 1 cut(s) | 56 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 87, 184, 241, 391 |
| BseMII | CTCAG | 2 cut(s) | 217, 231 |
| BseXI | GCAGC | 2 cut(s) | 64, 145 |
| BseYI | CCCAGC | 1 cut(s) | 390 |
| Bsh1236I | CGCG | 1 cut(s) | 210 |
| Bsh1285I | CGRYCG | 1 cut(s) | 88 |
| BshFI | GGCC | 2 cut(s) | 91, 148 |
| BsiEI | CGRYCG | 1 cut(s) | 88 |
| BsiSI | CCGG | 2 cut(s) | 61, 101 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 87, 184, 241, 391 |
| BsnI | GGCC | 2 cut(s) | 91, 148 |
| Bsp13I | TCCGGA | 1 cut(s) | 60 |
| Bsp143I | GATC | 4 cut(s) | 8, 51, 85, 376 |
| BspACI | CCGC | 6 cut(s) | 129, 175, 178, 208, 261, 285 |
| BspANI | GGCC | 2 cut(s) | 91, 148 |
| BspCNI | CTCAG | 2 cut(s) | 216, 230 |
| BspEI | TCCGGA | 1 cut(s) | 60 |
| BspFNI | CGCG | 1 cut(s) | 210 |
| BspMAI | CTGCAG | 1 cut(s) | 163 |
| BspOI | GCTAGC | 1 cut(s) | 192 |
| BssMI | GATC | 4 cut(s) | 8, 51, 85, 376 |
| Bst2UI | CCWGG | 1 cut(s) | 145 |
| Bst4CI | ACNGT | 3 cut(s) | 125, 327, 426 |
| BstC8I | GCNNGC | 1 cut(s) | 190 |
| BstDEI | CTNAG | 4 cut(s) | 203, 217, 362, 380 |
| BstF5I | GGATG | 2 cut(s) | 135, 436 |
| BstFNI | CGCG | 1 cut(s) | 210 |
| BstH2I | RGCGCY | 1 cut(s) | 195 |
| BstHHI | GCGC | 1 cut(s) | 194 |
| BstKTI | GATC | 4 cut(s) | 11, 54, 88, 379 |
| BstMBI | GATC | 4 cut(s) | 8, 51, 85, 376 |
| BstMCI | CGRYCG | 1 cut(s) | 88 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 174, 269 |
| BstNI | CCWGG | 1 cut(s) | 145 |
| BstSCI | CCNGG | 1 cut(s) | 143 |
| BstSFI | CTRYAG | 1 cut(s) | 159 |
| BstUI | CGCG | 1 cut(s) | 210 |
| BstV1I | GCAGC | 2 cut(s) | 64, 145 |
| BstV2I | GAAGAC | 2 cut(s) | 101, 416 |
| BsuRI | GGCC | 2 cut(s) | 91, 148 |
| BtsCI | GGATG | 2 cut(s) | 135, 436 |
| Cac8I | GCNNGC | 1 cut(s) | 190 |
| CfoI | GCGC | 1 cut(s) | 194 |
| CseI | GACGC | 1 cut(s) | 199 |
| Csp6I | GTAC | 2 cut(s) | 232, 397 |
| CviJI | RGCY | 7 cut(s) | 77, 91, 148, 168, 188, 207, 384 |
| CviKI_1 | RGCY | 7 cut(s) | 77, 91, 148, 168, 188, 207, 384 |
| CviQI | GTAC | 2 cut(s) | 232, 397 |
| DdeI | CTNAG | 4 cut(s) | 203, 217, 362, 380 |
| DpnI | GATC | 4 cut(s) | 10, 53, 87, 378 |
| DpnII | GATC | 4 cut(s) | 8, 51, 85, 376 |
| EciI | GGCGGA | 1 cut(s) | 118 |
| Eco47III | AGCGCT | 1 cut(s) | 193 |
| Eco57I | CTGAAG | 1 cut(s) | 386 |
| EcoRII | CCWGG | 1 cut(s) | 143 |
| FaiI | YATR | 1 cut(s) | 372 |
| FauI | CCCGC | 1 cut(s) | 182 |
| FblI | GTMKAC | 1 cut(s) | 213 |
| Fnu4HI | GCNGC | 4 cut(s) | 78, 159, 178, 208 |
| FokI | GGATG | 1 cut(s) | 122 |
| Fsp4HI | GCNGC | 4 cut(s) | 78, 159, 178, 208 |
| FspBI | CTAG | 1 cut(s) | 189 |
| GlaI | GCGC | 1 cut(s) | 193 |
| GluI | GCNGC | 4 cut(s) | 78, 159, 178, 208 |
| GsaI | CCCAGC | 1 cut(s) | 394 |
| HaeII | RGCGCY | 1 cut(s) | 195 |
| HaeIII | GGCC | 2 cut(s) | 91, 148 |
| HapII | CCGG | 2 cut(s) | 61, 101 |
| HgaI | GACGC | 1 cut(s) | 199 |
| HhaI | GCGC | 1 cut(s) | 194 |
| Hin6I | GCGC | 1 cut(s) | 192 |
| HinP1I | GCGC | 1 cut(s) | 192 |
| HincII | GTYRAC | 2 cut(s) | 199, 214 |
| HindII | GTYRAC | 2 cut(s) | 199, 214 |
| HinfI | GANTC | 4 cut(s) | 31, 57, 215, 308 |
| HpaII | CCGG | 2 cut(s) | 61, 101 |
| HphI | GGTGA | 1 cut(s) | 349 |
| Hpy166II | GTNNAC | 2 cut(s) | 199, 214 |
| Hpy188I | TCNGA | 5 cut(s) | 13, 28, 56, 220, 250 |
| Hpy188III | TCNNGA | 2 cut(s) | 49, 61 |
| Hpy8I | GTNNAC | 2 cut(s) | 199, 214 |
| Hpy99I | CGWCG | 1 cut(s) | 215 |
| HpyAV | CCTTC | 3 cut(s) | 53, 215, 410 |
| HpyCH4III | ACNGT | 3 cut(s) | 125, 327, 426 |
| HpyCH4V | TGCA | 1 cut(s) | 161 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 174, 269 |
| HpyF3I | CTNAG | 4 cut(s) | 203, 217, 362, 380 |
| HspAI | GCGC | 1 cut(s) | 192 |
| Kpn2I | TCCGGA | 1 cut(s) | 60 |
| Kzo9I | GATC | 4 cut(s) | 8, 51, 85, 376 |
| LpnPI | CCDG | 6 cut(s) | 74, 114, 130, 157, 194, 376 |
| Lsp1109I | GCAGC | 2 cut(s) | 64, 145 |
| LweI | GCATC | 1 cut(s) | 421 |
| MaeI | CTAG | 1 cut(s) | 189 |
| MaeIII | GTNAC | 1 cut(s) | 295 |
| MalI | GATC | 4 cut(s) | 10, 53, 87, 378 |
| MboI | GATC | 4 cut(s) | 8, 51, 85, 376 |
| MboII | GAAGA | 2 cut(s) | 101, 421 |
| MlyI | GAGTC | 2 cut(s) | 209, 302 |
| MnlI | CCTC | 5 cut(s) | 102, 123, 164, 177, 212 |
| MroI | TCCGGA | 1 cut(s) | 60 |
| MseI | TTAA | 2 cut(s) | 353, 438 |
| MspI | CCGG | 2 cut(s) | 61, 101 |
| MspR9I | CCNGG | 1 cut(s) | 145 |
| MvaI | CCWGG | 1 cut(s) | 145 |
| MvnI | CGCG | 1 cut(s) | 210 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 174, 269 |
| NdeII | GATC | 4 cut(s) | 8, 51, 85, 376 |
| NheI | GCTAGC | 1 cut(s) | 188 |
| PfeI | GAWTC | 2 cut(s) | 31, 57 |
| PkrI | GCNGC | 4 cut(s) | 79, 160, 179, 209 |
| Ple19I | CGATCG | 1 cut(s) | 88 |
| PleI | GAGTC | 2 cut(s) | 209, 302 |
| PpsI | GAGTC | 2 cut(s) | 209, 302 |
| Psp6I | CCWGG | 1 cut(s) | 143 |
| PspFI | CCCAGC | 1 cut(s) | 390 |
| PspGI | CCWGG | 1 cut(s) | 143 |
| PstI | CTGCAG | 1 cut(s) | 163 |
| PvuI | CGATCG | 1 cut(s) | 88 |
| RsaI | GTAC | 2 cut(s) | 233, 398 |
| RsaNI | GTAC | 2 cut(s) | 232, 397 |
| SalI | GTCGAC | 1 cut(s) | 212 |
| SaqAI | TTAA | 2 cut(s) | 353, 438 |
| SatI | GCNGC | 4 cut(s) | 78, 159, 178, 208 |
| Sau3AI | GATC | 4 cut(s) | 8, 51, 85, 376 |
| SchI | GAGTC | 2 cut(s) | 209, 302 |
| ScrFI | CCNGG | 1 cut(s) | 145 |
| SetI | ASST | 6 cut(s) | 45, 146, 156, 204, 339, 402 |
| SfaNI | GCATC | 1 cut(s) | 421 |
| SfcI | CTRYAG | 1 cut(s) | 159 |
| SmlI | CTYRAG | 1 cut(s) | 227 |
| SmoI | CTYRAG | 1 cut(s) | 227 |
| SsiI | CCGC | 6 cut(s) | 129, 175, 178, 208, 261, 285 |
| SspMI | CTAG | 1 cut(s) | 189 |
| StyD4I | CCNGG | 1 cut(s) | 143 |
| TaaI | ACNGT | 3 cut(s) | 125, 327, 426 |
| TaqI | TCGA | 1 cut(s) | 213 |
| TauI | GCSGC | 2 cut(s) | 180, 210 |
| TfiI | GAWTC | 2 cut(s) | 31, 57 |
| Tru1I | TTAA | 2 cut(s) | 353, 438 |
| Tru9I | TTAA | 2 cut(s) | 353, 438 |
| TseI | GCWGC | 2 cut(s) | 77, 158 |
| XmiI | GTMKAC | 1 cut(s) | 213 |
| XspI | CTAG | 1 cut(s) | 189 |