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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 151 |
| AclWI | GGATC | 2 cut(s) | 247, 558 |
| AcsI | RAATTY | 1 cut(s) | 432 |
| AcuI | CTGAAG | 2 cut(s) | 32, 267 |
| AcvI | CACGTG | 2 cut(s) | 515, 533 |
| AdeI | CACNNNGTG | 1 cut(s) | 533 |
| AfaI | GTAC | 1 cut(s) | 44 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 37, 127 |
| AflIII | ACRYGT | 2 cut(s) | 192, 496 |
| AgsI | TTSAA | 4 cut(s) | 55, 184, 346, 400 |
| AjiI | CACGTC | 1 cut(s) | 497 |
| AjnI | CCWGG | 1 cut(s) | 410 |
| Alw26I | GTCTC | 1 cut(s) | 373 |
| AlwI | GGATC | 2 cut(s) | 247, 558 |
| Ama87I | CYCGRG | 1 cut(s) | 437 |
| AoxI | GGCC | 1 cut(s) | 413 |
| ApoI | RAATTY | 1 cut(s) | 432 |
| AseI | ATTAAT | 1 cut(s) | 21 |
| AspLEI | GCGC | 1 cut(s) | 201 |
| AspS9I | GGNCC | 1 cut(s) | 414 |
| AvaI | CYCGRG | 1 cut(s) | 437 |
| BbrPI | CACGTG | 2 cut(s) | 515, 533 |
| BbsI | GAAGAC | 1 cut(s) | 62 |
| BciT130I | CCWGG | 1 cut(s) | 412 |
| BcoDI | GTCTC | 1 cut(s) | 373 |
| BfaI | CTAG | 1 cut(s) | 296 |
| Bme1390I | CCNGG | 1 cut(s) | 412 |
| BmeT110I | CYCGRG | 1 cut(s) | 437 |
| BmgBI | CACGTC | 1 cut(s) | 497 |
| BmgT120I | GGNCC | 1 cut(s) | 414 |
| BmrFI | CCNGG | 1 cut(s) | 412 |
| BmrI | ACTGGG | 1 cut(s) | 429 |
| BmsI | GCATC | 2 cut(s) | 67, 555 |
| BmuI | ACTGGG | 1 cut(s) | 429 |
| BpiI | GAAGAC | 1 cut(s) | 62 |
| BsaAI | YACGTR | 2 cut(s) | 515, 533 |
| BsaJI | CCNNGG | 1 cut(s) | 438 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 37, 127 |
| Bse1I | ACTGG | 3 cut(s) | 132, 304, 424 |
| BseBI | CCWGG | 1 cut(s) | 412 |
| BseDI | CCNNGG | 1 cut(s) | 438 |
| BseGI | GGATG | 1 cut(s) | 82 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 37, 127 |
| BseMII | CTCAG | 1 cut(s) | 366 |
| BseNI | ACTGG | 3 cut(s) | 132, 304, 424 |
| BseYI | CCCAGC | 1 cut(s) | 36 |
| BshFI | GGCC | 1 cut(s) | 415 |
| BsiHKCI | CYCGRG | 1 cut(s) | 437 |
| BslFI | GGGAC | 2 cut(s) | 436, 555 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 37, 127 |
| BsmAI | GTCTC | 1 cut(s) | 373 |
| BsmFI | GGGAC | 2 cut(s) | 436, 555 |
| BsnI | GGCC | 1 cut(s) | 415 |
| BsoBI | CYCGRG | 1 cut(s) | 437 |
| Bsp143I | GATC | 2 cut(s) | 252, 550 |
| BspACI | CCGC | 1 cut(s) | 151 |
| BspANI | GGCC | 1 cut(s) | 415 |
| BspCNI | CTCAG | 1 cut(s) | 367 |
| BspHI | TCATGA | 1 cut(s) | 106 |
| BspPI | GGATC | 2 cut(s) | 247, 558 |
| BsrI | ACTGG | 3 cut(s) | 132, 304, 424 |
| BssECI | CCNNGG | 1 cut(s) | 438 |
| BssMI | GATC | 2 cut(s) | 252, 550 |
| Bst2UI | CCWGG | 1 cut(s) | 412 |
| Bst4CI | ACNGT | 1 cut(s) | 72 |
| BstBAI | YACGTR | 2 cut(s) | 515, 533 |
| BstC8I | GCNNGC | 1 cut(s) | 155 |
| BstDEI | CTNAG | 2 cut(s) | 8, 375 |
| BstF5I | GGATG | 1 cut(s) | 82 |
| BstHHI | GCGC | 1 cut(s) | 201 |
| BstKTI | GATC | 2 cut(s) | 255, 553 |
| BstMAI | GTCTC | 1 cut(s) | 373 |
| BstMBI | GATC | 2 cut(s) | 252, 550 |
| BstNI | CCWGG | 1 cut(s) | 412 |
| BstNSI | RCATGY | 1 cut(s) | 196 |
| BstSCI | CCNGG | 1 cut(s) | 410 |
| BstV2I | GAAGAC | 1 cut(s) | 62 |
| BsuRI | GGCC | 1 cut(s) | 415 |
| BtrI | CACGTC | 1 cut(s) | 497 |
| BtsCI | GGATG | 1 cut(s) | 82 |
| BtsIMutI | CAGTG | 2 cut(s) | 143, 417 |
| Cac8I | GCNNGC | 1 cut(s) | 155 |
| CciI | TCATGA | 1 cut(s) | 106 |
| CfoI | GCGC | 1 cut(s) | 201 |
| Cfr13I | GGNCC | 1 cut(s) | 414 |
| Csp6I | GTAC | 1 cut(s) | 43 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 205, 240 |
| CviAII | CATG | 5 cut(s) | 107, 193, 524, 545, 594 |
| CviJI | RGCY | 4 cut(s) | 30, 374, 415, 443 |
| CviKI_1 | RGCY | 4 cut(s) | 30, 374, 415, 443 |
| CviQI | GTAC | 1 cut(s) | 43 |
| DdeI | CTNAG | 2 cut(s) | 8, 375 |
| DpnI | GATC | 2 cut(s) | 254, 552 |
| DpnII | GATC | 2 cut(s) | 252, 550 |
| DraIII | CACNNNGTG | 1 cut(s) | 533 |
| Eco57I | CTGAAG | 2 cut(s) | 32, 267 |
| Eco72I | CACGTG | 2 cut(s) | 515, 533 |
| Eco88I | CYCGRG | 1 cut(s) | 437 |
| EcoRII | CCWGG | 1 cut(s) | 410 |
| FaeI | CATG | 5 cut(s) | 110, 196, 527, 548, 597 |
| FaqI | GGGAC | 2 cut(s) | 436, 555 |
| FatI | CATG | 5 cut(s) | 106, 192, 523, 544, 593 |
| FokI | GGATG | 1 cut(s) | 89 |
| FspBI | CTAG | 1 cut(s) | 296 |
| GlaI | GCGC | 1 cut(s) | 200 |
| GsaI | CCCAGC | 1 cut(s) | 40 |
| HaeIII | GGCC | 1 cut(s) | 415 |
| HhaI | GCGC | 1 cut(s) | 201 |
| Hin1II | CATG | 5 cut(s) | 110, 196, 527, 548, 597 |
| Hin6I | GCGC | 1 cut(s) | 199 |
| HinP1I | GCGC | 1 cut(s) | 199 |
| HincII | GTYRAC | 1 cut(s) | 583 |
| HindII | GTYRAC | 1 cut(s) | 583 |
| HinfI | GANTC | 5 cut(s) | 147, 171, 262, 333, 391 |
| Hpy166II | GTNNAC | 1 cut(s) | 583 |
| Hpy188I | TCNGA | 1 cut(s) | 9 |
| Hpy188III | TCNNGA | 3 cut(s) | 107, 397, 437 |
| Hpy8I | GTNNAC | 1 cut(s) | 583 |
| HpyAV | CCTTC | 3 cut(s) | 56, 222, 352 |
| HpyCH4III | ACNGT | 1 cut(s) | 72 |
| HpyCH4IV | ACGT | 4 cut(s) | 91, 496, 514, 532 |
| HpyCH4V | TGCA | 3 cut(s) | 482, 527, 568 |
| HpyF3I | CTNAG | 2 cut(s) | 8, 375 |
| HpySE526I | ACGT | 4 cut(s) | 91, 496, 514, 532 |
| Hsp92II | CATG | 5 cut(s) | 110, 196, 527, 548, 597 |
| HspAI | GCGC | 1 cut(s) | 199 |
| Kzo9I | GATC | 2 cut(s) | 252, 550 |
| LmnI | GCTCC | 1 cut(s) | 123 |
| LpnPI | CCDG | 7 cut(s) | 22, 113, 135, 317, 397, 405, 424 |
| LweI | GCATC | 2 cut(s) | 67, 555 |
| MaeI | CTAG | 1 cut(s) | 296 |
| MaeII | ACGT | 4 cut(s) | 91, 496, 514, 532 |
| MalI | GATC | 2 cut(s) | 254, 552 |
| MboI | GATC | 2 cut(s) | 252, 550 |
| MboII | GAAGA | 2 cut(s) | 67, 254 |
| MluCI | AATT | 2 cut(s) | 217, 432 |
| MlyI | GAGTC | 2 cut(s) | 180, 256 |
| MmeI | TCCRAC | 1 cut(s) | 294 |
| MnlI | CCTC | 2 cut(s) | 3, 433 |
| MseI | TTAA | 3 cut(s) | 21, 84, 203 |
| MspR9I | CCNGG | 1 cut(s) | 412 |
| MvaI | CCWGG | 1 cut(s) | 412 |
| NdeII | GATC | 2 cut(s) | 252, 550 |
| NlaIII | CATG | 5 cut(s) | 110, 196, 527, 548, 597 |
| NspI | RCATGY | 1 cut(s) | 196 |
| PagI | TCATGA | 1 cut(s) | 106 |
| PciI | ACATGT | 1 cut(s) | 192 |
| PfeI | GAWTC | 3 cut(s) | 147, 333, 391 |
| PleI | GAGTC | 2 cut(s) | 179, 256 |
| PmaCI | CACGTG | 2 cut(s) | 515, 533 |
| PmlI | CACGTG | 2 cut(s) | 515, 533 |
| PpsI | GAGTC | 2 cut(s) | 179, 256 |
| Ppu21I | YACGTR | 2 cut(s) | 515, 533 |
| PscI | ACATGT | 1 cut(s) | 192 |
| PshBI | ATTAAT | 1 cut(s) | 21 |
| Psp6I | CCWGG | 1 cut(s) | 410 |
| PspCI | CACGTG | 2 cut(s) | 515, 533 |
| PspFI | CCCAGC | 1 cut(s) | 36 |
| PspGI | CCWGG | 1 cut(s) | 410 |
| PspPI | GGNCC | 1 cut(s) | 414 |
| RsaI | GTAC | 1 cut(s) | 44 |
| RsaNI | GTAC | 1 cut(s) | 43 |
| SaqAI | TTAA | 3 cut(s) | 21, 84, 203 |
| Sau3AI | GATC | 2 cut(s) | 252, 550 |
| Sau96I | GGNCC | 1 cut(s) | 414 |
| SchI | GAGTC | 2 cut(s) | 180, 256 |
| ScrFI | CCNGG | 1 cut(s) | 412 |
| SetI | ASST | 9 cut(s) | 48, 94, 116, 275, 344, 466, 499, 517, 535 |
| SfaNI | GCATC | 2 cut(s) | 67, 555 |
| Sse9I | AATT | 2 cut(s) | 217, 432 |
| SsiI | CCGC | 1 cut(s) | 151 |
| SspMI | CTAG | 1 cut(s) | 296 |
| StyD4I | CCNGG | 1 cut(s) | 410 |
| TaaI | ACNGT | 1 cut(s) | 72 |
| TaiI | ACGT | 4 cut(s) | 94, 499, 517, 535 |
| TasI | AATT | 2 cut(s) | 217, 432 |
| TfiI | GAWTC | 3 cut(s) | 147, 333, 391 |
| Tru1I | TTAA | 3 cut(s) | 21, 84, 203 |
| Tru9I | TTAA | 3 cut(s) | 21, 84, 203 |
| TscAI | CASTG | 2 cut(s) | 143, 424 |
| TspDTI | ATGAA | 2 cut(s) | 95, 473 |
| TspRI | CASTG | 2 cut(s) | 143, 424 |
| VspI | ATTAAT | 1 cut(s) | 21 |
| XapI | RAATTY | 1 cut(s) | 432 |
| XceI | RCATGY | 1 cut(s) | 196 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 530 |
| XspI | CTAG | 1 cut(s) | 296 |