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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 182 |
| Acc36I | ACCTGC | 1 cut(s) | 182 |
| AccII | CGCG | 2 cut(s) | 60, 354 |
| AciI | CCGC | 9 cut(s) | 44, 60, 96, 131, 331, 352, 399, 521, 871 |
| AclWI | GGATC | 5 cut(s) | 174, 205, 296, 704, 737 |
| AcoI | YGGCCR | 2 cut(s) | 128, 281 |
| AcuI | CTGAAG | 3 cut(s) | 461, 752, 987 |
| AfaI | GTAC | 2 cut(s) | 575, 764 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 59, 107, 126, 495, 583, 724, 757 |
| AflII | CTTAAG | 1 cut(s) | 803 |
| AflIII | ACRYGT | 1 cut(s) | 912 |
| AgsI | TTSAA | 2 cut(s) | 775, 904 |
| AhlI | ACTAGT | 1 cut(s) | 1015 |
| AjiI | CACGTC | 1 cut(s) | 932 |
| AjnI | CCWGG | 1 cut(s) | 841 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 837, 869 |
| AluBI | AGCT | 3 cut(s) | 325, 851, 1007 |
| AluI | AGCT | 3 cut(s) | 325, 851, 1007 |
| Alw26I | GTCTC | 1 cut(s) | 938 |
| AlwI | GGATC | 5 cut(s) | 174, 205, 296, 704, 737 |
| AoxI | GGCC | 5 cut(s) | 61, 128, 281, 385, 497 |
| AspLEI | GCGC | 3 cut(s) | 356, 425, 921 |
| AspS9I | GGNCC | 1 cut(s) | 110 |
| AsuHPI | GGTGA | 3 cut(s) | 42, 341, 682 |
| AvaII | GGWCC | 1 cut(s) | 110 |
| BaeGI | GKGCMC | 1 cut(s) | 18 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 557, 590 |
| BanII | GRGCYC | 1 cut(s) | 515 |
| BbsI | GAAGAC | 1 cut(s) | 782 |
| BccI | CCATC | 3 cut(s) | 163, 434, 523 |
| BciT130I | CCWGG | 1 cut(s) | 843 |
| BcoDI | GTCTC | 1 cut(s) | 938 |
| BcuI | ACTAGT | 1 cut(s) | 1015 |
| BfaI | CTAG | 4 cut(s) | 747, 848, 1016, 1024 |
| BfmI | CTRYAG | 3 cut(s) | 175, 294, 459 |
| BfoI | RGCGCY | 1 cut(s) | 426 |
| BfrI | CTTAAG | 1 cut(s) | 803 |
| BfuAI | ACCTGC | 1 cut(s) | 182 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 611 |
| Bme1390I | CCNGG | 1 cut(s) | 843 |
| Bme18I | GGWCC | 1 cut(s) | 110 |
| BmgBI | CACGTC | 1 cut(s) | 932 |
| BmgT120I | GGNCC | 1 cut(s) | 110 |
| BmiI | GGNNCC | 1 cut(s) | 335 |
| BmrFI | CCNGG | 1 cut(s) | 843 |
| BmsI | GCATC | 3 cut(s) | 40, 670, 787 |
| BpiI | GAAGAC | 1 cut(s) | 782 |
| BpmI | CTGGAG | 1 cut(s) | 328 |
| BpuEI | CTTGAG | 1 cut(s) | 590 |
| Bsa29I | ATCGAT | 1 cut(s) | 244 |
| BsaJI | CCNNGG | 1 cut(s) | 841 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 59, 107, 126, 495, 583, 724, 757 |
| Bse118I | RCCGGY | 2 cut(s) | 279, 383 |
| Bse1I | ACTGG | 1 cut(s) | 345 |
| Bse3DI | GCAATG | 1 cut(s) | 624 |
| BseBI | CCWGG | 1 cut(s) | 843 |
| BseCI | ATCGAT | 1 cut(s) | 244 |
| BseDI | CCNNGG | 1 cut(s) | 841 |
| BseGI | GGATG | 4 cut(s) | 390, 426, 515, 802 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 59, 107, 126, 495, 583, 724, 757 |
| BseMI | GCAATG | 1 cut(s) | 624 |
| BseMII | CTCAG | 3 cut(s) | 531, 573, 686 |
| BseNI | ACTGG | 1 cut(s) | 345 |
| BseSI | GKGCMC | 1 cut(s) | 18 |
| BseYI | CCCAGC | 8 cut(s) | 8, 74, 143, 191, 227, 233, 257, 723 |
| BsgI | GTGCAG | 4 cut(s) | 4, 47, 54, 293 |
| Bsh1236I | CGCG | 2 cut(s) | 60, 354 |
| Bsh1285I | CGRYCG | 2 cut(s) | 202, 244 |
| BshFI | GGCC | 5 cut(s) | 63, 130, 283, 387, 499 |
| BshVI | ATCGAT | 1 cut(s) | 244 |
| BsiEI | CGRYCG | 2 cut(s) | 202, 244 |
| BsiSI | CCGG | 2 cut(s) | 280, 384 |
| BslFI | GGGAC | 1 cut(s) | 822 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 59, 107, 126, 495, 583, 724, 757 |
| BsmAI | GTCTC | 1 cut(s) | 938 |
| BsmBI | CGTCTC | 1 cut(s) | 938 |
| BsmFI | GGGAC | 1 cut(s) | 822 |
| BsnI | GGCC | 5 cut(s) | 63, 130, 283, 387, 499 |
| Bsp1286I | GDGCHC | 2 cut(s) | 18, 515 |
| BspACI | CCGC | 9 cut(s) | 44, 60, 96, 131, 331, 352, 399, 521, 871 |
| BspANI | GGCC | 5 cut(s) | 63, 130, 283, 387, 499 |
| BspCNI | CTCAG | 3 cut(s) | 532, 572, 687 |
| BspDI | ATCGAT | 1 cut(s) | 244 |
| BspFNI | CGCG | 2 cut(s) | 60, 354 |
| BspLI | GGNNCC | 1 cut(s) | 335 |
| BspMAI | CTGCAG | 3 cut(s) | 179, 298, 463 |
| BspMI | ACCTGC | 1 cut(s) | 182 |
| BspPI | GGATC | 5 cut(s) | 174, 205, 296, 704, 737 |
| BspTI | CTTAAG | 1 cut(s) | 803 |
| BsrDI | GCAATG | 1 cut(s) | 624 |
| BsrFI | RCCGGY | 2 cut(s) | 279, 383 |
| BsrI | ACTGG | 1 cut(s) | 345 |
| BssAI | RCCGGY | 2 cut(s) | 279, 383 |
| BssECI | CCNNGG | 1 cut(s) | 841 |
| Bst2UI | CCWGG | 1 cut(s) | 843 |
| Bst4CI | ACNGT | 1 cut(s) | 25 |
| BstAFI | CTTAAG | 1 cut(s) | 803 |
| BstC8I | GCNNGC | 5 cut(s) | 14, 385, 459, 501, 875 |
| BstDEI | CTNAG | 3 cut(s) | 540, 559, 695 |
| BstF5I | GGATG | 4 cut(s) | 390, 426, 515, 802 |
| BstFNI | CGCG | 2 cut(s) | 60, 354 |
| BstH2I | RGCGCY | 1 cut(s) | 426 |
| BstHHI | GCGC | 3 cut(s) | 356, 425, 921 |
| BstMAI | GTCTC | 1 cut(s) | 938 |
| BstMCI | CGRYCG | 2 cut(s) | 202, 244 |
| BstNI | CCWGG | 1 cut(s) | 843 |
| BstNSI | RCATGY | 1 cut(s) | 916 |
| BstSCI | CCNGG | 1 cut(s) | 841 |
| BstSFI | CTRYAG | 3 cut(s) | 175, 294, 459 |
| BstSLI | GKGCMC | 1 cut(s) | 18 |
| BstUI | CGCG | 2 cut(s) | 60, 354 |
| BstV2I | GAAGAC | 1 cut(s) | 782 |
| BstX2I | RGATCY | 2 cut(s) | 179, 301 |
| BstYI | RGATCY | 2 cut(s) | 179, 301 |
| Bsu15I | ATCGAT | 1 cut(s) | 244 |
| BsuRI | GGCC | 5 cut(s) | 63, 130, 283, 387, 499 |
| BsuTUI | ATCGAT | 1 cut(s) | 244 |
| BtgZI | GCGATG | 1 cut(s) | 141 |
| BtrI | CACGTC | 1 cut(s) | 932 |
| BtsCI | GGATG | 4 cut(s) | 390, 426, 515, 802 |
| BtsI | GCAGTG | 2 cut(s) | 66, 276 |
| BtsIMutI | CAGTG | 3 cut(s) | 66, 276, 863 |
| BveI | ACCTGC | 1 cut(s) | 182 |
| Cac8I | GCNNGC | 5 cut(s) | 14, 385, 459, 501, 875 |
| CfoI | GCGC | 3 cut(s) | 356, 425, 921 |
| Cfr10I | RCCGGY | 2 cut(s) | 279, 383 |
| Cfr13I | GGNCC | 1 cut(s) | 110 |
| ClaI | ATCGAT | 1 cut(s) | 244 |
| Csp6I | GTAC | 2 cut(s) | 574, 763 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 925, 960 |
| CviAII | CATG | 1 cut(s) | 913 |
| CviQI | GTAC | 2 cut(s) | 574, 763 |
| DdeI | CTNAG | 3 cut(s) | 540, 559, 695 |
| EaeI | YGGCCR | 2 cut(s) | 128, 281 |
| EciI | GGCGGA | 1 cut(s) | 388 |
| Eco24I | GRGCYC | 1 cut(s) | 515 |
| Eco47I | GGWCC | 1 cut(s) | 110 |
| Eco57I | CTGAAG | 3 cut(s) | 461, 752, 987 |
| EcoRII | CCWGG | 1 cut(s) | 841 |
| EcoT38I | GRGCYC | 1 cut(s) | 515 |
| Esp3I | CGTCTC | 1 cut(s) | 938 |
| FaeI | CATG | 1 cut(s) | 916 |
| FaiI | YATR | 6 cut(s) | 705, 738, 885, 914, 971, 1013 |
| FaqI | GGGAC | 1 cut(s) | 822 |
| FatI | CATG | 1 cut(s) | 912 |
| FauI | CCCGC | 2 cut(s) | 51, 528 |
| FokI | GGATG | 4 cut(s) | 377, 413, 502, 809 |
| FriOI | GRGCYC | 1 cut(s) | 515 |
| FspBI | CTAG | 4 cut(s) | 747, 848, 1016, 1024 |
| GlaI | GCGC | 3 cut(s) | 355, 424, 920 |
| GsaI | CCCAGC | 8 cut(s) | 12, 78, 147, 195, 231, 237, 261, 727 |
| GsuI | CTGGAG | 1 cut(s) | 328 |
| HaeII | RGCGCY | 1 cut(s) | 426 |
| HaeIII | GGCC | 5 cut(s) | 63, 130, 283, 387, 499 |
| HapII | CCGG | 2 cut(s) | 280, 384 |
| HhaI | GCGC | 3 cut(s) | 356, 425, 921 |
| Hin1II | CATG | 1 cut(s) | 916 |
| Hin6I | GCGC | 3 cut(s) | 354, 423, 919 |
| HinP1I | GCGC | 3 cut(s) | 354, 423, 919 |
| HincII | GTYRAC | 1 cut(s) | 1021 |
| HindII | GTYRAC | 1 cut(s) | 1021 |
| HindIII | AAGCTT | 1 cut(s) | 323 |
| HinfI | GANTC | 4 cut(s) | 246, 557, 867, 982 |
| HpaII | CCGG | 2 cut(s) | 280, 384 |
| HphI | GGTGA | 3 cut(s) | 42, 341, 682 |
| Hpy166II | GTNNAC | 1 cut(s) | 1021 |
| Hpy188I | TCNGA | 3 cut(s) | 562, 592, 696 |
| Hpy188III | TCNNGA | 3 cut(s) | 35, 438, 827 |
| Hpy8I | GTNNAC | 1 cut(s) | 1021 |
| HpyAV | CCTTC | 5 cut(s) | 57, 65, 485, 557, 776 |
| HpyCH4III | ACNGT | 1 cut(s) | 25 |
| HpyCH4IV | ACGT | 4 cut(s) | 491, 754, 811, 931 |
| HpyF3I | CTNAG | 3 cut(s) | 540, 559, 695 |
| HpySE526I | ACGT | 4 cut(s) | 491, 754, 811, 931 |
| Hsp92II | CATG | 1 cut(s) | 916 |
| HspAI | GCGC | 3 cut(s) | 354, 423, 919 |
| KroI | GCCGGC | 1 cut(s) | 383 |
| KroNI | GCCGGC | 1 cut(s) | 385 |
| LmnI | GCTCC | 2 cut(s) | 339, 843 |
| LweI | GCATC | 3 cut(s) | 40, 670, 787 |
| MaeI | CTAG | 4 cut(s) | 747, 848, 1016, 1024 |
| MaeII | ACGT | 4 cut(s) | 491, 754, 811, 931 |
| MaeIII | GTNAC | 1 cut(s) | 347 |
| MboII | GAAGA | 2 cut(s) | 787, 974 |
| MflI | RGATCY | 2 cut(s) | 179, 301 |
| MhlI | GDGCHC | 2 cut(s) | 18, 515 |
| MluCI | AATT | 2 cut(s) | 788, 937 |
| MlyI | GAGTC | 2 cut(s) | 551, 976 |
| MmeI | TCCRAC | 1 cut(s) | 554 |
| MroNI | GCCGGC | 1 cut(s) | 383 |
| MseI | TTAA | 3 cut(s) | 686, 804, 923 |
| MspCI | CTTAAG | 1 cut(s) | 803 |
| MspI | CCGG | 2 cut(s) | 280, 384 |
| MspR9I | CCNGG | 1 cut(s) | 843 |
| MvaI | CCWGG | 1 cut(s) | 843 |
| MvnI | CGCG | 2 cut(s) | 60, 354 |
| NaeI | GCCGGC | 1 cut(s) | 385 |
| NgoMIV | GCCGGC | 1 cut(s) | 383 |
| NlaIII | CATG | 1 cut(s) | 916 |
| NlaIV | GGNNCC | 1 cut(s) | 335 |
| NmuCI | GTSAC | 1 cut(s) | 347 |
| NspI | RCATGY | 1 cut(s) | 916 |
| PaqCI | CACCTGC | 1 cut(s) | 182 |
| PciI | ACATGT | 1 cut(s) | 912 |
| PdiI | GCCGGC | 1 cut(s) | 385 |
| PfeI | GAWTC | 2 cut(s) | 246, 867 |
| Ple19I | CGATCG | 2 cut(s) | 202, 244 |
| PleI | GAGTC | 2 cut(s) | 551, 976 |
| PpsI | GAGTC | 2 cut(s) | 551, 976 |
| PscI | ACATGT | 1 cut(s) | 912 |
| Psp6I | CCWGG | 1 cut(s) | 841 |
| PspFI | CCCAGC | 8 cut(s) | 8, 74, 143, 191, 227, 233, 257, 723 |
| PspGI | CCWGG | 1 cut(s) | 841 |
| PspN4I | GGNNCC | 1 cut(s) | 335 |
| PspPI | GGNCC | 1 cut(s) | 110 |
| PstI | CTGCAG | 3 cut(s) | 179, 298, 463 |
| PsuI | RGATCY | 2 cut(s) | 179, 301 |
| PvuI | CGATCG | 2 cut(s) | 202, 244 |
| RsaI | GTAC | 2 cut(s) | 575, 764 |
| RsaNI | GTAC | 2 cut(s) | 574, 763 |
| SaqAI | TTAA | 3 cut(s) | 686, 804, 923 |
| Sau96I | GGNCC | 1 cut(s) | 110 |
| SchI | GAGTC | 2 cut(s) | 551, 976 |
| ScrFI | CCNGG | 1 cut(s) | 843 |
| SduI | GDGCHC | 2 cut(s) | 18, 515 |
| SfaNI | GCATC | 3 cut(s) | 40, 670, 787 |
| SfcI | CTRYAG | 3 cut(s) | 175, 294, 459 |
| SinI | GGWCC | 1 cut(s) | 110 |
| SmlI | CTYRAG | 2 cut(s) | 569, 803 |
| SmoI | CTYRAG | 2 cut(s) | 569, 803 |
| SpeI | ACTAGT | 1 cut(s) | 1015 |
| Sse9I | AATT | 2 cut(s) | 788, 937 |
| SsiI | CCGC | 9 cut(s) | 44, 60, 96, 131, 331, 352, 399, 521, 871 |
| SspMI | CTAG | 4 cut(s) | 747, 848, 1016, 1024 |
| StyD4I | CCNGG | 1 cut(s) | 841 |
| TaaI | ACNGT | 1 cut(s) | 25 |
| TaiI | ACGT | 4 cut(s) | 494, 757, 814, 934 |
| TaqI | TCGA | 4 cut(s) | 244, 439, 445, 535 |
| TasI | AATT | 2 cut(s) | 788, 937 |
| TauI | GCSGC | 3 cut(s) | 63, 133, 334 |
| TfiI | GAWTC | 2 cut(s) | 246, 867 |
| Tru1I | TTAA | 3 cut(s) | 686, 804, 923 |
| Tru9I | TTAA | 3 cut(s) | 686, 804, 923 |
| TscAI | CASTG | 3 cut(s) | 73, 276, 863 |
| TseFI | GTSAC | 1 cut(s) | 347 |
| Tsp45I | GTSAC | 1 cut(s) | 347 |
| TspDTI | ATGAA | 1 cut(s) | 669 |
| TspRI | CASTG | 3 cut(s) | 73, 276, 863 |
| Vha464I | CTTAAG | 1 cut(s) | 803 |
| VpaK11BI | GGWCC | 1 cut(s) | 110 |
| XceI | RCATGY | 1 cut(s) | 916 |
| XspI | CTAG | 4 cut(s) | 747, 848, 1016, 1024 |