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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 360 |
| Acc16I | TGCGCA | 2 cut(s) | 117, 290 |
| Acc36I | ACCTGC | 2 cut(s) | 214, 360 |
| AccI | GTMKAC | 1 cut(s) | 93 |
| AccII | CGCG | 1 cut(s) | 33 |
| AciI | CCGC | 4 cut(s) | 33, 58, 82, 562 |
| AclWI | GGATC | 4 cut(s) | 43, 262, 658, 907 |
| AcsI | RAATTY | 1 cut(s) | 843 |
| AcuI | CTGAAG | 2 cut(s) | 443, 678 |
| AcvI | CACGTG | 2 cut(s) | 925, 943 |
| AdeI | CACNNNGTG | 1 cut(s) | 943 |
| AfaI | GTAC | 2 cut(s) | 151, 455 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 141, 281, 448 |
| AflII | CTTAAG | 1 cut(s) | 494 |
| AflIII | ACRYGT | 2 cut(s) | 603, 906 |
| AgsI | TTSAA | 4 cut(s) | 466, 595, 757, 811 |
| AjiI | CACGTC | 2 cut(s) | 160, 907 |
| AjnI | CCWGG | 1 cut(s) | 280 |
| AluBI | AGCT | 1 cut(s) | 242 |
| AluI | AGCT | 1 cut(s) | 242 |
| Alw26I | GTCTC | 1 cut(s) | 21 |
| AlwI | GGATC | 4 cut(s) | 43, 262, 658, 907 |
| Ama87I | CYCGRG | 2 cut(s) | 6, 848 |
| AoxI | GGCC | 7 cut(s) | 54, 63, 86, 123, 143, 184, 824 |
| ApeKI | GCWGC | 6 cut(s) | 109, 198, 209, 231, 251, 324 |
| ApoI | RAATTY | 1 cut(s) | 843 |
| AspLEI | GCGC | 5 cut(s) | 118, 214, 236, 291, 313 |
| AspS9I | GGNCC | 5 cut(s) | 55, 64, 87, 124, 185 |
| AsuC2I | CCSGG | 2 cut(s) | 183, 217 |
| AsuHPI | GGTGA | 1 cut(s) | 964 |
| AvaI | CYCGRG | 2 cut(s) | 6, 848 |
| BanII | GRGCYC | 1 cut(s) | 75 |
| BbrPI | CACGTG | 2 cut(s) | 925, 943 |
| BbsI | GAAGAC | 3 cut(s) | 473, 583, 677 |
| BbvI | GCAGC | 6 cut(s) | 121, 210, 221, 243, 263, 311 |
| BccI | CCATC | 1 cut(s) | 43 |
| BciT130I | CCWGG | 1 cut(s) | 282 |
| BclI | TGATCA | 1 cut(s) | 765 |
| BcnI | CCSGG | 2 cut(s) | 183, 217 |
| BcoDI | GTCTC | 1 cut(s) | 21 |
| BfaI | CTAG | 2 cut(s) | 276, 707 |
| BfmI | CTRYAG | 2 cut(s) | 207, 243 |
| BfoI | RGCGCY | 2 cut(s) | 215, 237 |
| BfrI | CTTAAG | 1 cut(s) | 494 |
| BfuAI | ACCTGC | 2 cut(s) | 214, 360 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 62 |
| BisI | GCNGC | 6 cut(s) | 110, 199, 210, 232, 252, 325 |
| BlsI | GCNGC | 6 cut(s) | 111, 200, 211, 233, 253, 326 |
| Bme1390I | CCNGG | 3 cut(s) | 183, 217, 282 |
| BmeT110I | CYCGRG | 2 cut(s) | 6, 848 |
| BmgBI | CACGTC | 2 cut(s) | 160, 907 |
| BmgT120I | GGNCC | 5 cut(s) | 55, 64, 87, 124, 185 |
| BmiI | GGNNCC | 3 cut(s) | 126, 172, 187 |
| BmrFI | CCNGG | 3 cut(s) | 183, 217, 282 |
| BmsI | GCATC | 3 cut(s) | 174, 287, 478 |
| BpiI | GAAGAC | 3 cut(s) | 473, 583, 677 |
| BpmI | CTGGAG | 2 cut(s) | 247, 746 |
| BpuMI | CCSGG | 2 cut(s) | 183, 217 |
| BsaAI | YACGTR | 2 cut(s) | 925, 943 |
| BsaI | GGTCTC | 1 cut(s) | 21 |
| BsaJI | CCNNGG | 4 cut(s) | 67, 215, 280, 849 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 141, 281, 448 |
| Bse1I | ACTGG | 4 cut(s) | 174, 230, 715, 729 |
| BseBI | CCWGG | 1 cut(s) | 282 |
| BseDI | CCNNGG | 4 cut(s) | 67, 215, 280, 849 |
| BseGI | GGATG | 2 cut(s) | 316, 493 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 141, 281, 448 |
| BseNI | ACTGG | 4 cut(s) | 174, 230, 715, 729 |
| BseXI | GCAGC | 6 cut(s) | 121, 210, 221, 243, 263, 311 |
| BseYI | CCCAGC | 2 cut(s) | 134, 447 |
| Bsh1236I | CGCG | 1 cut(s) | 33 |
| BshFI | GGCC | 7 cut(s) | 56, 65, 88, 125, 145, 186, 826 |
| BsiHKCI | CYCGRG | 2 cut(s) | 6, 848 |
| BsiSI | CCGG | 2 cut(s) | 183, 217 |
| BslFI | GGGAC | 2 cut(s) | 513, 847 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 141, 281, 448 |
| BsmAI | GTCTC | 1 cut(s) | 21 |
| BsmFI | GGGAC | 2 cut(s) | 513, 847 |
| BsnI | GGCC | 7 cut(s) | 56, 65, 88, 125, 145, 186, 826 |
| Bso31I | GGTCTC | 1 cut(s) | 21 |
| BsoBI | CYCGRG | 2 cut(s) | 6, 848 |
| Bsp1286I | GDGCHC | 1 cut(s) | 75 |
| Bsp1407I | TGTACA | 1 cut(s) | 149 |
| Bsp143I | GATC | 5 cut(s) | 35, 267, 663, 765, 912 |
| BspACI | CCGC | 4 cut(s) | 33, 58, 82, 562 |
| BspANI | GGCC | 7 cut(s) | 56, 65, 88, 125, 145, 186, 826 |
| BspFNI | CGCG | 1 cut(s) | 33 |
| BspHI | TCATGA | 1 cut(s) | 517 |
| BspLI | GGNNCC | 3 cut(s) | 126, 172, 187 |
| BspMAI | CTGCAG | 1 cut(s) | 211 |
| BspMI | ACCTGC | 2 cut(s) | 214, 360 |
| BspPI | GGATC | 4 cut(s) | 43, 262, 658, 907 |
| BspTI | CTTAAG | 1 cut(s) | 494 |
| BspTNI | GGTCTC | 1 cut(s) | 21 |
| BsrGI | TGTACA | 1 cut(s) | 149 |
| BsrI | ACTGG | 4 cut(s) | 174, 230, 715, 729 |
| BssECI | CCNNGG | 4 cut(s) | 67, 215, 280, 849 |
| BssMI | GATC | 5 cut(s) | 35, 267, 663, 765, 912 |
| BssNAI | GTATAC | 1 cut(s) | 94 |
| Bst1107I | GTATAC | 1 cut(s) | 94 |
| Bst2UI | CCWGG | 1 cut(s) | 282 |
| Bst4CI | ACNGT | 2 cut(s) | 247, 483 |
| Bst6I | CTCTTC | 1 cut(s) | 395 |
| BstAFI | CTTAAG | 1 cut(s) | 494 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 297 |
| BstAUI | TGTACA | 1 cut(s) | 149 |
| BstBAI | YACGTR | 2 cut(s) | 925, 943 |
| BstC8I | GCNNGC | 6 cut(s) | 58, 86, 102, 114, 196, 287 |
| BstDSI | CCRYGG | 1 cut(s) | 67 |
| BstF5I | GGATG | 2 cut(s) | 316, 493 |
| BstFNI | CGCG | 1 cut(s) | 33 |
| BstH2I | RGCGCY | 2 cut(s) | 215, 237 |
| BstHHI | GCGC | 5 cut(s) | 118, 214, 236, 291, 313 |
| BstKTI | GATC | 5 cut(s) | 38, 270, 666, 768, 915 |
| BstMAI | GTCTC | 1 cut(s) | 21 |
| BstMBI | GATC | 5 cut(s) | 35, 267, 663, 765, 912 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 62, 106, 115, 122, 248, 297 |
| BstNI | CCWGG | 1 cut(s) | 282 |
| BstNSI | RCATGY | 1 cut(s) | 607 |
| BstSCI | CCNGG | 3 cut(s) | 181, 215, 280 |
| BstSFI | CTRYAG | 2 cut(s) | 207, 243 |
| BstUI | CGCG | 1 cut(s) | 33 |
| BstV1I | GCAGC | 6 cut(s) | 121, 210, 221, 243, 263, 311 |
| BstV2I | GAAGAC | 3 cut(s) | 473, 583, 677 |
| BstZ17I | GTATAC | 1 cut(s) | 94 |
| BsuRI | GGCC | 7 cut(s) | 56, 65, 88, 125, 145, 186, 826 |
| BtgI | CCRYGG | 1 cut(s) | 67 |
| BtrI | CACGTC | 2 cut(s) | 160, 907 |
| BtsCI | GGATG | 2 cut(s) | 316, 493 |
| BtsIMutI | CAGTG | 1 cut(s) | 554 |
| BveI | ACCTGC | 2 cut(s) | 214, 360 |
| Cac8I | GCNNGC | 6 cut(s) | 58, 86, 102, 114, 196, 287 |
| CciI | TCATGA | 1 cut(s) | 517 |
| CfoI | GCGC | 5 cut(s) | 118, 214, 236, 291, 313 |
| Cfr13I | GGNCC | 5 cut(s) | 55, 64, 87, 124, 185 |
| Csp6I | GTAC | 2 cut(s) | 150, 454 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 49, 84, 616, 651 |
| CviAII | CATG | 2 cut(s) | 518, 604 |
| CviQI | GTAC | 2 cut(s) | 150, 454 |
| DpnI | GATC | 5 cut(s) | 37, 269, 665, 767, 914 |
| DpnII | GATC | 5 cut(s) | 35, 267, 663, 765, 912 |
| DraIII | CACNNNGTG | 1 cut(s) | 943 |
| Eam1104I | CTCTTC | 1 cut(s) | 395 |
| EarI | CTCTTC | 1 cut(s) | 395 |
| Eco147I | AGGCCT | 2 cut(s) | 145, 826 |
| Eco24I | GRGCYC | 1 cut(s) | 75 |
| Eco31I | GGTCTC | 1 cut(s) | 21 |
| Eco57I | CTGAAG | 2 cut(s) | 443, 678 |
| Eco72I | CACGTG | 2 cut(s) | 925, 943 |
| Eco88I | CYCGRG | 2 cut(s) | 6, 848 |
| EcoRII | CCWGG | 1 cut(s) | 280 |
| EcoT22I | ATGCAT | 1 cut(s) | 302 |
| EcoT38I | GRGCYC | 1 cut(s) | 75 |
| FaeI | CATG | 2 cut(s) | 521, 607 |
| FaqI | GGGAC | 2 cut(s) | 513, 847 |
| FatI | CATG | 2 cut(s) | 517, 603 |
| FauI | CCCGC | 1 cut(s) | 65 |
| FbaI | TGATCA | 1 cut(s) | 765 |
| FblI | GTMKAC | 1 cut(s) | 93 |
| Fnu4HI | GCNGC | 6 cut(s) | 110, 199, 210, 232, 252, 325 |
| FokI | GGATG | 2 cut(s) | 303, 500 |
| FriOI | GRGCYC | 1 cut(s) | 75 |
| Fsp4HI | GCNGC | 6 cut(s) | 110, 199, 210, 232, 252, 325 |
| FspBI | CTAG | 2 cut(s) | 276, 707 |
| FspI | TGCGCA | 2 cut(s) | 117, 290 |
| GlaI | GCGC | 5 cut(s) | 117, 213, 235, 290, 312 |
| GluI | GCNGC | 6 cut(s) | 110, 199, 210, 232, 252, 325 |
| GsaI | CCCAGC | 2 cut(s) | 138, 451 |
| GsuI | CTGGAG | 2 cut(s) | 247, 746 |
| HaeII | RGCGCY | 2 cut(s) | 215, 237 |
| HaeIII | GGCC | 7 cut(s) | 56, 65, 88, 125, 145, 186, 826 |
| HapII | CCGG | 2 cut(s) | 183, 217 |
| HhaI | GCGC | 5 cut(s) | 118, 214, 236, 291, 313 |
| Hin1II | CATG | 2 cut(s) | 521, 607 |
| Hin6I | GCGC | 5 cut(s) | 116, 212, 234, 289, 311 |
| HinP1I | GCGC | 5 cut(s) | 116, 212, 234, 289, 311 |
| HinfI | GANTC | 4 cut(s) | 4, 28, 673, 744 |
| HpaII | CCGG | 2 cut(s) | 183, 217 |
| HphI | GGTGA | 1 cut(s) | 964 |
| Hpy166II | GTNNAC | 3 cut(s) | 94, 152, 179 |
| Hpy188I | TCNGA | 2 cut(s) | 170, 690 |
| Hpy188III | TCNNGA | 3 cut(s) | 518, 667, 848 |
| Hpy8I | GTNNAC | 3 cut(s) | 94, 152, 179 |
| HpyAV | CCTTC | 4 cut(s) | 273, 357, 467, 763 |
| HpyCH4III | ACNGT | 2 cut(s) | 247, 483 |
| HpyCH4IV | ACGT | 5 cut(s) | 159, 502, 906, 924, 942 |
| HpyCH4V | TGCA | 7 cut(s) | 194, 209, 300, 355, 778, 893, 937 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 62, 106, 115, 122, 248, 297 |
| HpySE526I | ACGT | 5 cut(s) | 159, 502, 906, 924, 942 |
| Hsp92II | CATG | 2 cut(s) | 521, 607 |
| HspAI | GCGC | 5 cut(s) | 116, 212, 234, 289, 311 |
| Ksp22I | TGATCA | 1 cut(s) | 765 |
| Kzo9I | GATC | 5 cut(s) | 35, 267, 663, 765, 912 |
| LmnI | GCTCC | 4 cut(s) | 228, 366, 534, 959 |
| Lsp1109I | GCAGC | 6 cut(s) | 121, 210, 221, 243, 263, 311 |
| LweI | GCATC | 3 cut(s) | 174, 287, 478 |
| MaeI | CTAG | 2 cut(s) | 276, 707 |
| MaeII | ACGT | 5 cut(s) | 159, 502, 906, 924, 942 |
| MalI | GATC | 5 cut(s) | 37, 269, 665, 767, 914 |
| MboI | GATC | 5 cut(s) | 35, 267, 663, 765, 912 |
| MboII | GAAGA | 9 cut(s) | 383, 386, 409, 412, 433, 478, 583, 665, 682 |
| MhlI | GDGCHC | 1 cut(s) | 75 |
| MluCI | AATT | 3 cut(s) | 628, 843, 856 |
| MlyI | GAGTC | 2 cut(s) | 22, 667 |
| MmeI | TCCRAC | 2 cut(s) | 713, 882 |
| MnlI | CCTC | 6 cut(s) | 46, 115, 330, 387, 793, 844 |
| Mph1103I | ATGCAT | 1 cut(s) | 302 |
| MseI | TTAA | 2 cut(s) | 495, 967 |
| MspA1I | CMGCKG | 1 cut(s) | 84 |
| MspCI | CTTAAG | 1 cut(s) | 494 |
| MspI | CCGG | 2 cut(s) | 183, 217 |
| MspR9I | CCNGG | 3 cut(s) | 183, 217, 282 |
| MvaI | CCWGG | 1 cut(s) | 282 |
| MvnI | CGCG | 1 cut(s) | 33 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 62, 106, 115, 122, 248, 297 |
| NciI | CCSGG | 2 cut(s) | 183, 217 |
| NdeII | GATC | 5 cut(s) | 35, 267, 663, 765, 912 |
| NlaIII | CATG | 2 cut(s) | 521, 607 |
| NlaIV | GGNNCC | 3 cut(s) | 126, 172, 187 |
| NmeAIII | GCCGAG | 1 cut(s) | 101 |
| NsbI | TGCGCA | 2 cut(s) | 117, 290 |
| NsiI | ATGCAT | 1 cut(s) | 302 |
| NspI | RCATGY | 1 cut(s) | 607 |
| PaeR7I | CTCGAG | 1 cut(s) | 6 |
| PagI | TCATGA | 1 cut(s) | 517 |
| PaqCI | CACCTGC | 1 cut(s) | 360 |
| PceI | AGGCCT | 2 cut(s) | 145, 826 |
| PciI | ACATGT | 1 cut(s) | 603 |
| PfeI | GAWTC | 1 cut(s) | 744 |
| PkrI | GCNGC | 6 cut(s) | 111, 200, 211, 233, 253, 326 |
| PleI | GAGTC | 2 cut(s) | 22, 667 |
| PmaCI | CACGTG | 2 cut(s) | 925, 943 |
| PmlI | CACGTG | 2 cut(s) | 925, 943 |
| PpsI | GAGTC | 2 cut(s) | 22, 667 |
| Ppu21I | YACGTR | 2 cut(s) | 925, 943 |
| PscI | ACATGT | 1 cut(s) | 603 |
| Psp6I | CCWGG | 1 cut(s) | 280 |
| PspCI | CACGTG | 2 cut(s) | 925, 943 |
| PspFI | CCCAGC | 2 cut(s) | 134, 447 |
| PspGI | CCWGG | 1 cut(s) | 280 |
| PspN4I | GGNNCC | 3 cut(s) | 126, 172, 187 |
| PspPI | GGNCC | 5 cut(s) | 55, 64, 87, 124, 185 |
| PspXI | VCTCGAGB | 1 cut(s) | 6 |
| PstI | CTGCAG | 1 cut(s) | 211 |
| RsaI | GTAC | 2 cut(s) | 151, 455 |
| RsaNI | GTAC | 2 cut(s) | 150, 454 |
| SaqAI | TTAA | 2 cut(s) | 495, 967 |
| SatI | GCNGC | 6 cut(s) | 110, 199, 210, 232, 252, 325 |
| Sau3AI | GATC | 5 cut(s) | 35, 267, 663, 765, 912 |
| Sau96I | GGNCC | 5 cut(s) | 55, 64, 87, 124, 185 |
| SchI | GAGTC | 2 cut(s) | 22, 667 |
| ScrFI | CCNGG | 3 cut(s) | 183, 217, 282 |
| SduI | GDGCHC | 1 cut(s) | 75 |
| SfaNI | GCATC | 3 cut(s) | 174, 287, 478 |
| SfcI | CTRYAG | 2 cut(s) | 207, 243 |
| SfiI | GGCCNNNNNGGCC | 1 cut(s) | 62 |
| Sfr274I | CTCGAG | 1 cut(s) | 6 |
| SlaI | CTCGAG | 1 cut(s) | 6 |
| SmlI | CTYRAG | 2 cut(s) | 6, 494 |
| SmoI | CTYRAG | 2 cut(s) | 6, 494 |
| Sse9I | AATT | 3 cut(s) | 628, 843, 856 |
| SseBI | AGGCCT | 2 cut(s) | 145, 826 |
| SsiI | CCGC | 4 cut(s) | 33, 58, 82, 562 |
| SspMI | CTAG | 2 cut(s) | 276, 707 |
| StuI | AGGCCT | 2 cut(s) | 145, 826 |
| StyD4I | CCNGG | 3 cut(s) | 181, 215, 280 |
| TaaI | ACNGT | 2 cut(s) | 247, 483 |
| TaiI | ACGT | 5 cut(s) | 162, 505, 909, 927, 945 |
| TaqI | TCGA | 3 cut(s) | 7, 47, 266 |
| TasI | AATT | 3 cut(s) | 628, 843, 856 |
| TatI | WGTACW | 1 cut(s) | 149 |
| TfiI | GAWTC | 1 cut(s) | 744 |
| Tru1I | TTAA | 2 cut(s) | 495, 967 |
| Tru9I | TTAA | 2 cut(s) | 495, 967 |
| TscAI | CASTG | 1 cut(s) | 554 |
| TseI | GCWGC | 6 cut(s) | 109, 198, 209, 231, 251, 324 |
| TspDTI | ATGAA | 4 cut(s) | 434, 506, 570, 657 |
| TspRI | CASTG | 1 cut(s) | 554 |
| Vha464I | CTTAAG | 1 cut(s) | 494 |
| XapI | RAATTY | 1 cut(s) | 843 |
| XceI | RCATGY | 1 cut(s) | 607 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 278 |
| XhoI | CTCGAG | 1 cut(s) | 6 |
| XmiI | GTMKAC | 1 cut(s) | 93 |
| XspI | CTAG | 2 cut(s) | 276, 707 |
| Zsp2I | ATGCAT | 1 cut(s) | 302 |