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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 300 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 336 |
| AclWI | GGATC | 1 cut(s) | 248 |
| AcsI | RAATTY | 1 cut(s) | 183 |
| AcuI | CTGAAG | 2 cut(s) | 18, 390 |
| AcvI | CACGTG | 1 cut(s) | 266 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 336 |
| AgsI | TTSAA | 2 cut(s) | 97, 151 |
| AhlI | ACTAGT | 1 cut(s) | 46 |
| AjiI | CACGTC | 1 cut(s) | 248 |
| AjnI | CCWGG | 1 cut(s) | 161 |
| AluBI | AGCT | 1 cut(s) | 103 |
| AluI | AGCT | 1 cut(s) | 103 |
| Alw26I | GTCTC | 1 cut(s) | 315 |
| AlwI | GGATC | 1 cut(s) | 248 |
| Ama87I | CYCGRG | 1 cut(s) | 188 |
| AoxI | GGCC | 3 cut(s) | 164, 313, 359 |
| ApoI | RAATTY | 1 cut(s) | 183 |
| AspLEI | GCGC | 1 cut(s) | 342 |
| AspS9I | GGNCC | 2 cut(s) | 313, 359 |
| AsuHPI | GGTGA | 1 cut(s) | 394 |
| AvaI | CYCGRG | 1 cut(s) | 188 |
| BbrPI | CACGTG | 1 cut(s) | 266 |
| BbsI | GAAGAC | 1 cut(s) | 17 |
| BccI | CCATC | 2 cut(s) | 209, 341 |
| BceAI | ACGGC | 1 cut(s) | 300 |
| BciT130I | CCWGG | 1 cut(s) | 163 |
| BclI | TGATCA | 1 cut(s) | 105 |
| BcoDI | GTCTC | 1 cut(s) | 315 |
| BcuI | ACTAGT | 1 cut(s) | 46 |
| BfaI | CTAG | 2 cut(s) | 47, 363 |
| Bme1390I | CCNGG | 1 cut(s) | 163 |
| BmeT110I | CYCGRG | 1 cut(s) | 188 |
| BmgBI | CACGTC | 1 cut(s) | 248 |
| BmgT120I | GGNCC | 2 cut(s) | 313, 359 |
| BmiI | GGNNCC | 1 cut(s) | 393 |
| BmrFI | CCNGG | 1 cut(s) | 163 |
| BpiI | GAAGAC | 1 cut(s) | 17 |
| BpmI | CTGGAG | 1 cut(s) | 86 |
| BsaAI | YACGTR | 1 cut(s) | 266 |
| BsaI | GGTCTC | 1 cut(s) | 315 |
| BsaJI | CCNNGG | 2 cut(s) | 189, 316 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 336 |
| Bse1I | ACTGG | 1 cut(s) | 55 |
| BseBI | CCWGG | 1 cut(s) | 163 |
| BseDI | CCNNGG | 2 cut(s) | 189, 316 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 336 |
| BseMII | CTCAG | 1 cut(s) | 117 |
| BseNI | ACTGG | 1 cut(s) | 55 |
| BseYI | CCCAGC | 1 cut(s) | 356 |
| BshFI | GGCC | 3 cut(s) | 166, 315, 361 |
| BsiHKCI | CYCGRG | 1 cut(s) | 188 |
| BslFI | GGGAC | 2 cut(s) | 187, 306 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 336 |
| BsmAI | GTCTC | 1 cut(s) | 315 |
| BsmFI | GGGAC | 2 cut(s) | 187, 306 |
| BsnI | GGCC | 3 cut(s) | 166, 315, 361 |
| Bso31I | GGTCTC | 1 cut(s) | 315 |
| BsoBI | CYCGRG | 1 cut(s) | 188 |
| Bsp143I | GATC | 3 cut(s) | 3, 105, 253 |
| BspANI | GGCC | 3 cut(s) | 166, 315, 361 |
| BspCNI | CTCAG | 1 cut(s) | 118 |
| BspHI | TCATGA | 1 cut(s) | 304 |
| BspLI | GGNNCC | 1 cut(s) | 393 |
| BspPI | GGATC | 1 cut(s) | 248 |
| BspTNI | GGTCTC | 1 cut(s) | 315 |
| BsrI | ACTGG | 1 cut(s) | 55 |
| BssECI | CCNNGG | 2 cut(s) | 189, 316 |
| BssMI | GATC | 3 cut(s) | 3, 105, 253 |
| Bst2UI | CCWGG | 1 cut(s) | 163 |
| BstBAI | YACGTR | 1 cut(s) | 266 |
| BstDEI | CTNAG | 2 cut(s) | 126, 396 |
| BstDSI | CCRYGG | 1 cut(s) | 316 |
| BstHHI | GCGC | 1 cut(s) | 342 |
| BstKTI | GATC | 3 cut(s) | 6, 108, 256 |
| BstMAI | GTCTC | 1 cut(s) | 315 |
| BstMBI | GATC | 3 cut(s) | 3, 105, 253 |
| BstNI | CCWGG | 1 cut(s) | 163 |
| BstSCI | CCNGG | 1 cut(s) | 161 |
| BstV2I | GAAGAC | 1 cut(s) | 17 |
| BsuRI | GGCC | 3 cut(s) | 166, 315, 361 |
| BtgI | CCRYGG | 1 cut(s) | 316 |
| BtrI | CACGTC | 1 cut(s) | 248 |
| CciI | TCATGA | 1 cut(s) | 304 |
| CfoI | GCGC | 1 cut(s) | 342 |
| Cfr13I | GGNCC | 2 cut(s) | 313, 359 |
| CviAII | CATG | 3 cut(s) | 296, 305, 371 |
| CviJI | RGCY | 7 cut(s) | 64, 103, 125, 166, 194, 315, 361 |
| CviKI_1 | RGCY | 7 cut(s) | 64, 103, 125, 166, 194, 315, 361 |
| DdeI | CTNAG | 2 cut(s) | 126, 396 |
| DpnI | GATC | 3 cut(s) | 5, 107, 255 |
| DpnII | GATC | 3 cut(s) | 3, 105, 253 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 300 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 300 |
| Eco147I | AGGCCT | 1 cut(s) | 166 |
| Eco31I | GGTCTC | 1 cut(s) | 315 |
| Eco57I | CTGAAG | 2 cut(s) | 18, 390 |
| Eco72I | CACGTG | 1 cut(s) | 266 |
| Eco88I | CYCGRG | 1 cut(s) | 188 |
| EcoRII | CCWGG | 1 cut(s) | 161 |
| FaeI | CATG | 3 cut(s) | 299, 308, 374 |
| FaqI | GGGAC | 2 cut(s) | 187, 306 |
| FatI | CATG | 3 cut(s) | 295, 304, 370 |
| FbaI | TGATCA | 1 cut(s) | 105 |
| FspBI | CTAG | 2 cut(s) | 47, 363 |
| GlaI | GCGC | 1 cut(s) | 341 |
| GsaI | CCCAGC | 1 cut(s) | 360 |
| GsuI | CTGGAG | 1 cut(s) | 86 |
| HaeIII | GGCC | 3 cut(s) | 166, 315, 361 |
| HhaI | GCGC | 1 cut(s) | 342 |
| Hin1II | CATG | 3 cut(s) | 299, 308, 374 |
| Hin6I | GCGC | 1 cut(s) | 340 |
| HinP1I | GCGC | 1 cut(s) | 340 |
| HinfI | GANTC | 2 cut(s) | 13, 84 |
| HphI | GGTGA | 1 cut(s) | 394 |
| Hpy166II | GTNNAC | 1 cut(s) | 52 |
| Hpy188III | TCNNGA | 3 cut(s) | 7, 188, 305 |
| Hpy8I | GTNNAC | 1 cut(s) | 52 |
| HpyAV | CCTTC | 2 cut(s) | 103, 414 |
| HpyCH4IV | ACGT | 2 cut(s) | 247, 265 |
| HpyCH4V | TGCA | 2 cut(s) | 118, 278 |
| HpyF3I | CTNAG | 2 cut(s) | 126, 396 |
| HpySE526I | ACGT | 2 cut(s) | 247, 265 |
| Hsp92II | CATG | 3 cut(s) | 299, 308, 374 |
| HspAI | GCGC | 1 cut(s) | 340 |
| Ksp22I | TGATCA | 1 cut(s) | 105 |
| Kzo9I | GATC | 3 cut(s) | 3, 105, 253 |
| LpnPI | CCDG | 7 cut(s) | 20, 50, 68, 148, 175, 180, 342 |
| MaeI | CTAG | 2 cut(s) | 47, 363 |
| MaeII | ACGT | 2 cut(s) | 247, 265 |
| MalI | GATC | 3 cut(s) | 5, 107, 255 |
| MboI | GATC | 3 cut(s) | 3, 105, 253 |
| MboII | GAAGA | 1 cut(s) | 22 |
| MluCI | AATT | 3 cut(s) | 39, 183, 196 |
| MlyI | GAGTC | 1 cut(s) | 7 |
| MnlI | CCTC | 4 cut(s) | 123, 133, 184, 336 |
| MspR9I | CCNGG | 1 cut(s) | 163 |
| MvaI | CCWGG | 1 cut(s) | 163 |
| NdeII | GATC | 3 cut(s) | 3, 105, 253 |
| NlaIII | CATG | 3 cut(s) | 299, 308, 374 |
| NlaIV | GGNNCC | 1 cut(s) | 393 |
| PagI | TCATGA | 1 cut(s) | 304 |
| PceI | AGGCCT | 1 cut(s) | 166 |
| PfeI | GAWTC | 1 cut(s) | 84 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 336 |
| PleI | GAGTC | 1 cut(s) | 7 |
| PmaCI | CACGTG | 1 cut(s) | 266 |
| PmlI | CACGTG | 1 cut(s) | 266 |
| PpsI | GAGTC | 1 cut(s) | 7 |
| Ppu21I | YACGTR | 1 cut(s) | 266 |
| Psp6I | CCWGG | 1 cut(s) | 161 |
| PspCI | CACGTG | 1 cut(s) | 266 |
| PspFI | CCCAGC | 1 cut(s) | 356 |
| PspGI | CCWGG | 1 cut(s) | 161 |
| PspN4I | GGNNCC | 1 cut(s) | 393 |
| PspPI | GGNCC | 2 cut(s) | 313, 359 |
| Sau3AI | GATC | 3 cut(s) | 3, 105, 253 |
| Sau96I | GGNCC | 2 cut(s) | 313, 359 |
| SchI | GAGTC | 1 cut(s) | 7 |
| ScrFI | CCNGG | 1 cut(s) | 163 |
| SetI | ASST | 8 cut(s) | 95, 105, 114, 144, 250, 268, 384, 397 |
| SpeI | ACTAGT | 1 cut(s) | 46 |
| Sse9I | AATT | 3 cut(s) | 39, 183, 196 |
| SseBI | AGGCCT | 1 cut(s) | 166 |
| SspMI | CTAG | 2 cut(s) | 47, 363 |
| StuI | AGGCCT | 1 cut(s) | 166 |
| StyD4I | CCNGG | 1 cut(s) | 161 |
| TaiI | ACGT | 2 cut(s) | 250, 268 |
| TasI | AATT | 3 cut(s) | 39, 183, 196 |
| TfiI | GAWTC | 1 cut(s) | 84 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 336 |
| XapI | RAATTY | 1 cut(s) | 183 |
| XspI | CTAG | 2 cut(s) | 47, 363 |