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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 343 |
| AccB1I | GGYRCC | 1 cut(s) | 1171 |
| AciI | CCGC | 1 cut(s) | 95 |
| AclWI | GGATC | 1 cut(s) | 228 |
| AcsI | RAATTY | 1 cut(s) | 963 |
| AcuI | CTGAAG | 6 cut(s) | 114, 288, 434, 554, 798, 1170 |
| AcvI | CACGTG | 1 cut(s) | 1046 |
| AdeI | CACNNNGTG | 1 cut(s) | 1064 |
| AfaI | GTAC | 2 cut(s) | 259, 566 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 38, 222, 467, 559, 649 |
| AflII | CTTAAG | 1 cut(s) | 605 |
| AflIII | ACRYGT | 2 cut(s) | 52, 714 |
| AgsI | TTSAA | 4 cut(s) | 109, 577, 706, 931 |
| AjiI | CACGTC | 1 cut(s) | 1028 |
| AjnI | CCWGG | 2 cut(s) | 466, 941 |
| AluBI | AGCT | 2 cut(s) | 515, 546 |
| AluI | AGCT | 2 cut(s) | 515, 546 |
| Alw26I | GTCTC | 2 cut(s) | 329, 740 |
| AlwI | GGATC | 1 cut(s) | 228 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 260, 518 |
| AoxI | GGCC | 4 cut(s) | 434, 1093, 1102, 1138 |
| ApeKI | GCWGC | 1 cut(s) | 512 |
| ApoI | RAATTY | 1 cut(s) | 963 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 965 |
| AspLEI | GCGC | 1 cut(s) | 723 |
| AspS9I | GGNCC | 6 cut(s) | 119, 521, 945, 1093, 1103, 1139 |
| AsuHPI | GGTGA | 1 cut(s) | 254 |
| AvaII | GGWCC | 3 cut(s) | 119, 521, 945 |
| BaeGI | GKGCMC | 1 cut(s) | 1174 |
| BanI | GGYRCC | 1 cut(s) | 1171 |
| BbrPI | CACGTG | 1 cut(s) | 1046 |
| BbsI | GAAGAC | 2 cut(s) | 120, 584 |
| BbvCI | CCTCAGC | 1 cut(s) | 363 |
| BbvI | GCAGC | 1 cut(s) | 524 |
| BccI | CCATC | 2 cut(s) | 200, 1121 |
| BceAI | ACGGC | 2 cut(s) | 168, 1080 |
| BciT130I | CCWGG | 2 cut(s) | 468, 943 |
| BclI | TGATCA | 1 cut(s) | 885 |
| BcoDI | GTCTC | 2 cut(s) | 329, 740 |
| BfaI | CTAG | 6 cut(s) | 92, 345, 371, 543, 827, 1143 |
| BfmI | CTRYAG | 1 cut(s) | 510 |
| BfrI | CTTAAG | 1 cut(s) | 605 |
| BfuAI | ACCTGC | 1 cut(s) | 343 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1101 |
| BisI | GCNGC | 2 cut(s) | 96, 513 |
| BlsI | GCNGC | 2 cut(s) | 97, 514 |
| Bme1390I | CCNGG | 2 cut(s) | 468, 943 |
| Bme18I | GGWCC | 3 cut(s) | 119, 521, 945 |
| BmgBI | CACGTC | 1 cut(s) | 1028 |
| BmgT120I | GGNCC | 6 cut(s) | 119, 521, 945, 1093, 1103, 1139 |
| BmiI | GGNNCC | 4 cut(s) | 75, 121, 324, 1173 |
| BmrFI | CCNGG | 2 cut(s) | 468, 943 |
| BmrI | ACTGGG | 1 cut(s) | 960 |
| BmsI | GCATC | 3 cut(s) | 22, 253, 589 |
| BmuI | ACTGGG | 1 cut(s) | 960 |
| BoxI | GACNNNNGTC | 1 cut(s) | 124 |
| BpiI | GAAGAC | 2 cut(s) | 120, 584 |
| BpmI | CTGGAG | 1 cut(s) | 866 |
| Bpu10I | CCTNAGC | 1 cut(s) | 363 |
| BsaAI | YACGTR | 1 cut(s) | 1046 |
| BsaJI | CCNNGG | 1 cut(s) | 1096 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 38, 222, 467, 559, 649 |
| Bse1I | ACTGG | 5 cut(s) | 523, 654, 835, 849, 955 |
| BseBI | CCWGG | 2 cut(s) | 468, 943 |
| BseDI | CCNNGG | 1 cut(s) | 1096 |
| BseGI | GGATG | 2 cut(s) | 192, 604 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 38, 222, 467, 559, 649 |
| BseMII | CTCAG | 3 cut(s) | 170, 354, 897 |
| BseNI | ACTGG | 5 cut(s) | 523, 654, 835, 849, 955 |
| BseSI | GKGCMC | 1 cut(s) | 1174 |
| BseXI | GCAGC | 1 cut(s) | 524 |
| BseYI | CCCAGC | 1 cut(s) | 558 |
| BshFI | GGCC | 4 cut(s) | 436, 1095, 1104, 1140 |
| BshNI | GGYRCC | 1 cut(s) | 1171 |
| BslFI | GGGAC | 3 cut(s) | 302, 967, 1086 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 38, 222, 467, 559, 649 |
| BsmAI | GTCTC | 2 cut(s) | 329, 740 |
| BsmFI | GGGAC | 3 cut(s) | 302, 967, 1086 |
| BsnI | GGCC | 4 cut(s) | 436, 1095, 1104, 1140 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1174 |
| Bsp143I | GATC | 3 cut(s) | 233, 774, 885 |
| BspACI | CCGC | 1 cut(s) | 95 |
| BspANI | GGCC | 4 cut(s) | 436, 1095, 1104, 1140 |
| BspCNI | CTCAG | 3 cut(s) | 169, 355, 898 |
| BspHI | TCATGA | 1 cut(s) | 628 |
| BspLI | GGNNCC | 4 cut(s) | 75, 121, 324, 1173 |
| BspMAI | CTGCAG | 1 cut(s) | 514 |
| BspMI | ACCTGC | 1 cut(s) | 343 |
| BspPI | GGATC | 1 cut(s) | 228 |
| BspT107I | GGYRCC | 1 cut(s) | 1171 |
| BspTI | CTTAAG | 1 cut(s) | 605 |
| BsrI | ACTGG | 5 cut(s) | 523, 654, 835, 849, 955 |
| BssECI | CCNNGG | 1 cut(s) | 1096 |
| BssMI | GATC | 3 cut(s) | 233, 774, 885 |
| Bst2UI | CCWGG | 2 cut(s) | 468, 943 |
| Bst4CI | ACNGT | 3 cut(s) | 103, 490, 594 |
| BstAFI | CTTAAG | 1 cut(s) | 605 |
| BstBAI | YACGTR | 1 cut(s) | 1046 |
| BstC8I | GCNNGC | 3 cut(s) | 434, 677, 1138 |
| BstDEI | CTNAG | 5 cut(s) | 86, 156, 363, 906, 1176 |
| BstDSI | CCRYGG | 1 cut(s) | 1096 |
| BstF5I | GGATG | 2 cut(s) | 192, 604 |
| BstHHI | GCGC | 1 cut(s) | 723 |
| BstKTI | GATC | 3 cut(s) | 236, 777, 888 |
| BstMAI | GTCTC | 2 cut(s) | 329, 740 |
| BstMBI | GATC | 3 cut(s) | 233, 774, 885 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 1101 |
| BstNI | CCWGG | 2 cut(s) | 468, 943 |
| BstNSI | RCATGY | 3 cut(s) | 56, 718, 735 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 124 |
| BstSCI | CCNGG | 2 cut(s) | 466, 941 |
| BstSFI | CTRYAG | 1 cut(s) | 510 |
| BstSLI | GKGCMC | 1 cut(s) | 1174 |
| BstV1I | GCAGC | 1 cut(s) | 524 |
| BstV2I | GAAGAC | 2 cut(s) | 120, 584 |
| BstX2I | RGATCY | 1 cut(s) | 233 |
| BstYI | RGATCY | 1 cut(s) | 233 |
| BsuRI | GGCC | 4 cut(s) | 436, 1095, 1104, 1140 |
| BtgI | CCRYGG | 1 cut(s) | 1096 |
| BtrI | CACGTC | 1 cut(s) | 1028 |
| BtsCI | GGATG | 2 cut(s) | 192, 604 |
| BtsIMutI | CAGTG | 3 cut(s) | 665, 822, 948 |
| BveI | ACCTGC | 1 cut(s) | 343 |
| Cac8I | GCNNGC | 3 cut(s) | 434, 677, 1138 |
| CaiI | CAGNNNCTG | 2 cut(s) | 260, 518 |
| CciI | TCATGA | 1 cut(s) | 628 |
| CfoI | GCGC | 1 cut(s) | 723 |
| Cfr13I | GGNCC | 6 cut(s) | 119, 521, 945, 1093, 1103, 1139 |
| CseI | GACGC | 1 cut(s) | 299 |
| CsiI | ACCWGGT | 1 cut(s) | 466 |
| Csp6I | GTAC | 2 cut(s) | 258, 565 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 727, 762 |
| CviAII | CATG | 8 cut(s) | 53, 493, 629, 715, 732, 1062, 1076, 1151 |
| CviQI | GTAC | 2 cut(s) | 258, 565 |
| DdeI | CTNAG | 5 cut(s) | 86, 156, 363, 906, 1176 |
| DpnI | GATC | 3 cut(s) | 235, 776, 887 |
| DpnII | GATC | 3 cut(s) | 233, 774, 885 |
| DraIII | CACNNNGTG | 1 cut(s) | 1064 |
| Eco47I | GGWCC | 3 cut(s) | 119, 521, 945 |
| Eco57I | CTGAAG | 6 cut(s) | 114, 288, 434, 554, 798, 1170 |
| Eco72I | CACGTG | 1 cut(s) | 1046 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1103 |
| EcoRII | CCWGG | 2 cut(s) | 466, 941 |
| EcoT22I | ATGCAT | 1 cut(s) | 498 |
| FaeI | CATG | 8 cut(s) | 56, 496, 632, 718, 735, 1065, 1079, 1154 |
| FaqI | GGGAC | 3 cut(s) | 302, 967, 1086 |
| FatI | CATG | 8 cut(s) | 52, 492, 628, 714, 731, 1061, 1075, 1150 |
| FbaI | TGATCA | 1 cut(s) | 885 |
| Fnu4HI | GCNGC | 2 cut(s) | 96, 513 |
| FokI | GGATG | 2 cut(s) | 179, 611 |
| Fsp4HI | GCNGC | 2 cut(s) | 96, 513 |
| FspBI | CTAG | 6 cut(s) | 92, 345, 371, 543, 827, 1143 |
| GlaI | GCGC | 1 cut(s) | 722 |
| GluI | GCNGC | 2 cut(s) | 96, 513 |
| GsaI | CCCAGC | 1 cut(s) | 562 |
| GsuI | CTGGAG | 1 cut(s) | 866 |
| HaeIII | GGCC | 4 cut(s) | 436, 1095, 1104, 1140 |
| HgaI | GACGC | 1 cut(s) | 299 |
| HhaI | GCGC | 1 cut(s) | 723 |
| Hin1II | CATG | 8 cut(s) | 56, 496, 632, 718, 735, 1065, 1079, 1154 |
| Hin6I | GCGC | 1 cut(s) | 721 |
| HinP1I | GCGC | 1 cut(s) | 721 |
| HinfI | GANTC | 5 cut(s) | 389, 409, 669, 784, 864 |
| HphI | GGTGA | 1 cut(s) | 254 |
| Hpy166II | GTNNAC | 1 cut(s) | 948 |
| Hpy188I | TCNGA | 5 cut(s) | 18, 159, 334, 394, 414 |
| Hpy188III | TCNNGA | 4 cut(s) | 117, 132, 629, 928 |
| Hpy8I | GTNNAC | 1 cut(s) | 948 |
| HpyAV | CCTTC | 4 cut(s) | 216, 578, 744, 1194 |
| HpyCH4III | ACNGT | 3 cut(s) | 103, 490, 594 |
| HpyCH4IV | ACGT | 2 cut(s) | 1027, 1045 |
| HpyCH4V | TGCA | 6 cut(s) | 62, 352, 496, 512, 898, 1165 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 1101 |
| HpyF3I | CTNAG | 5 cut(s) | 86, 156, 363, 906, 1176 |
| HpySE526I | ACGT | 2 cut(s) | 1027, 1045 |
| Hsp92II | CATG | 8 cut(s) | 56, 496, 632, 718, 735, 1065, 1079, 1154 |
| HspAI | GCGC | 1 cut(s) | 721 |
| Ksp22I | TGATCA | 1 cut(s) | 885 |
| Kzo9I | GATC | 3 cut(s) | 233, 774, 885 |
| LmnI | GCTCC | 1 cut(s) | 322 |
| Lsp1109I | GCAGC | 1 cut(s) | 524 |
| LweI | GCATC | 3 cut(s) | 22, 253, 589 |
| MabI | ACCWGGT | 1 cut(s) | 466 |
| MaeI | CTAG | 6 cut(s) | 92, 345, 371, 543, 827, 1143 |
| MaeII | ACGT | 2 cut(s) | 1027, 1045 |
| MaeIII | GTNAC | 2 cut(s) | 242, 397 |
| MalI | GATC | 3 cut(s) | 235, 776, 887 |
| MboI | GATC | 3 cut(s) | 233, 774, 885 |
| MflI | RGATCY | 1 cut(s) | 233 |
| MhlI | GDGCHC | 1 cut(s) | 1174 |
| MluCI | AATT | 3 cut(s) | 739, 963, 976 |
| MlyI | GAGTC | 2 cut(s) | 403, 778 |
| Mph1103I | ATGCAT | 1 cut(s) | 498 |
| MroXI | GAANNNNTTC | 1 cut(s) | 965 |
| MseI | TTAA | 3 cut(s) | 404, 606, 725 |
| MslI | CAYNNNNRTG | 3 cut(s) | 57, 197, 404 |
| MspCI | CTTAAG | 1 cut(s) | 605 |
| MspR9I | CCNGG | 2 cut(s) | 468, 943 |
| MvaI | CCWGG | 2 cut(s) | 468, 943 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 1101 |
| NdeII | GATC | 3 cut(s) | 233, 774, 885 |
| NlaIII | CATG | 8 cut(s) | 56, 496, 632, 718, 735, 1065, 1079, 1154 |
| NlaIV | GGNNCC | 4 cut(s) | 75, 121, 324, 1173 |
| NmeAIII | GCCGAG | 1 cut(s) | 158 |
| NmuCI | GTSAC | 2 cut(s) | 242, 397 |
| NsiI | ATGCAT | 1 cut(s) | 498 |
| NspI | RCATGY | 3 cut(s) | 56, 718, 735 |
| PagI | TCATGA | 1 cut(s) | 628 |
| PciI | ACATGT | 2 cut(s) | 52, 714 |
| PdmI | GAANNNNTTC | 1 cut(s) | 965 |
| PfeI | GAWTC | 3 cut(s) | 389, 669, 864 |
| PkrI | GCNGC | 2 cut(s) | 97, 514 |
| PleI | GAGTC | 2 cut(s) | 403, 778 |
| PmaCI | CACGTG | 1 cut(s) | 1046 |
| PmlI | CACGTG | 1 cut(s) | 1046 |
| PpsI | GAGTC | 2 cut(s) | 403, 778 |
| Ppu21I | YACGTR | 1 cut(s) | 1046 |
| PscI | ACATGT | 2 cut(s) | 52, 714 |
| PshAI | GACNNNNGTC | 1 cut(s) | 124 |
| Psp6I | CCWGG | 2 cut(s) | 466, 941 |
| PspCI | CACGTG | 1 cut(s) | 1046 |
| PspFI | CCCAGC | 1 cut(s) | 558 |
| PspGI | CCWGG | 2 cut(s) | 466, 941 |
| PspN4I | GGNNCC | 4 cut(s) | 75, 121, 324, 1173 |
| PspPI | GGNCC | 6 cut(s) | 119, 521, 945, 1093, 1103, 1139 |
| PstI | CTGCAG | 1 cut(s) | 514 |
| PstNI | CAGNNNCTG | 2 cut(s) | 260, 518 |
| PsuI | RGATCY | 1 cut(s) | 233 |
| RsaI | GTAC | 2 cut(s) | 259, 566 |
| RsaNI | GTAC | 2 cut(s) | 258, 565 |
| RseI | CAYNNNNRTG | 3 cut(s) | 57, 197, 404 |
| SaqAI | TTAA | 3 cut(s) | 404, 606, 725 |
| SatI | GCNGC | 2 cut(s) | 96, 513 |
| Sau3AI | GATC | 3 cut(s) | 233, 774, 885 |
| Sau96I | GGNCC | 6 cut(s) | 119, 521, 945, 1093, 1103, 1139 |
| SchI | GAGTC | 2 cut(s) | 403, 778 |
| ScrFI | CCNGG | 2 cut(s) | 468, 943 |
| SduI | GDGCHC | 1 cut(s) | 1174 |
| SexAI | ACCWGGT | 1 cut(s) | 466 |
| SfaNI | GCATC | 3 cut(s) | 22, 253, 589 |
| SfcI | CTRYAG | 1 cut(s) | 510 |
| SfiI | GGCCNNNNNGGCC | 1 cut(s) | 1101 |
| SinI | GGWCC | 3 cut(s) | 119, 521, 945 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 57, 197, 404 |
| SmlI | CTYRAG | 1 cut(s) | 605 |
| SmoI | CTYRAG | 1 cut(s) | 605 |
| Sse9I | AATT | 3 cut(s) | 739, 963, 976 |
| SsiI | CCGC | 1 cut(s) | 95 |
| SspI | AATATT | 1 cut(s) | 625 |
| SspMI | CTAG | 6 cut(s) | 92, 345, 371, 543, 827, 1143 |
| StyD4I | CCNGG | 2 cut(s) | 466, 941 |
| TaaI | ACNGT | 3 cut(s) | 103, 490, 594 |
| TaiI | ACGT | 2 cut(s) | 1030, 1048 |
| TaqI | TCGA | 3 cut(s) | 9, 463, 969 |
| TasI | AATT | 3 cut(s) | 739, 963, 976 |
| TauI | GCSGC | 1 cut(s) | 98 |
| TfiI | GAWTC | 3 cut(s) | 389, 669, 864 |
| Tru1I | TTAA | 3 cut(s) | 404, 606, 725 |
| Tru9I | TTAA | 3 cut(s) | 404, 606, 725 |
| TscAI | CASTG | 3 cut(s) | 665, 822, 955 |
| TseFI | GTSAC | 2 cut(s) | 242, 397 |
| TseI | GCWGC | 1 cut(s) | 512 |
| Tsp45I | GTSAC | 2 cut(s) | 242, 397 |
| TspDTI | ATGAA | 4 cut(s) | 215, 324, 617, 1004 |
| TspRI | CASTG | 3 cut(s) | 665, 822, 955 |
| Vha464I | CTTAAG | 1 cut(s) | 605 |
| VpaK11BI | GGWCC | 3 cut(s) | 119, 521, 945 |
| XapI | RAATTY | 1 cut(s) | 963 |
| XceI | RCATGY | 3 cut(s) | 56, 718, 735 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 223 |
| XmnI | GAANNNNTTC | 1 cut(s) | 965 |
| XspI | CTAG | 6 cut(s) | 92, 345, 371, 543, 827, 1143 |
| Zsp2I | ATGCAT | 1 cut(s) | 498 |