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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 1067 |
| AccI | GTMKAC | 1 cut(s) | 983 |
| AciI | CCGC | 7 cut(s) | 438, 676, 711, 722, 841, 907, 1092 |
| AclWI | GGATC | 5 cut(s) | 2, 185, 415, 830, 896 |
| AcsI | RAATTY | 3 cut(s) | 23, 385, 600 |
| AcuI | CTGAAG | 3 cut(s) | 200, 435, 935 |
| AdeI | CACNNNGTG | 3 cut(s) | 854, 920, 1100 |
| AfaI | GTAC | 2 cut(s) | 56, 212 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 205, 682, 695, 758, 1058, 1059 |
| AflII | CTTAAG | 1 cut(s) | 251 |
| AgsI | TTSAA | 4 cut(s) | 223, 352, 514, 568 |
| AjiI | CACGTC | 1 cut(s) | 380 |
| AjnI | CCWGG | 1 cut(s) | 578 |
| AluBI | AGCT | 2 cut(s) | 520, 1022 |
| AluI | AGCT | 2 cut(s) | 520, 1022 |
| Alw26I | GTCTC | 5 cut(s) | 539, 734, 831, 897, 1109 |
| AlwI | GGATC | 5 cut(s) | 2, 185, 415, 830, 896 |
| AoxI | GGCC | 2 cut(s) | 581, 1144 |
| ApeKI | GCWGC | 1 cut(s) | 1022 |
| ApoI | RAATTY | 3 cut(s) | 23, 385, 600 |
| AspS9I | GGNCC | 1 cut(s) | 137 |
| AsuHPI | GGTGA | 3 cut(s) | 163, 644, 1159 |
| AvaII | GGWCC | 1 cut(s) | 137 |
| AxyI | CCTNAGG | 1 cut(s) | 606 |
| BaeGI | GKGCMC | 1 cut(s) | 1065 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 38, 71 |
| BanI | GGYRCC | 1 cut(s) | 1067 |
| BbsI | GAAGAC | 3 cut(s) | 230, 434, 739 |
| BbvI | GCAGC | 1 cut(s) | 1009 |
| BciT130I | CCWGG | 1 cut(s) | 580 |
| BclI | TGATCA | 1 cut(s) | 522 |
| BcoDI | GTCTC | 5 cut(s) | 539, 734, 831, 897, 1109 |
| BfaI | CTAG | 3 cut(s) | 195, 464, 714 |
| BfrI | CTTAAG | 1 cut(s) | 251 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 92 |
| BisI | GCNGC | 1 cut(s) | 1023 |
| BlsI | GCNGC | 1 cut(s) | 1024 |
| Bme1390I | CCNGG | 1 cut(s) | 580 |
| Bme18I | GGWCC | 1 cut(s) | 137 |
| BmgBI | CACGTC | 1 cut(s) | 380 |
| BmgT120I | GGNCC | 1 cut(s) | 137 |
| BmiI | GGNNCC | 2 cut(s) | 687, 1069 |
| BmrFI | CCNGG | 1 cut(s) | 580 |
| BmsI | GCATC | 3 cut(s) | 235, 960, 967 |
| BpiI | GAAGAC | 3 cut(s) | 230, 434, 739 |
| BpmI | CTGGAG | 1 cut(s) | 503 |
| BpuEI | CTTGAG | 1 cut(s) | 71 |
| Bsa29I | ATCGAT | 2 cut(s) | 879, 945 |
| BsaI | GGTCTC | 1 cut(s) | 1109 |
| BsaJI | CCNNGG | 4 cut(s) | 785, 1119, 1129, 1171 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1095, 1125 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 205, 682, 695, 758, 1058, 1059 |
| Bse21I | CCTNAGG | 1 cut(s) | 606 |
| BseBI | CCWGG | 1 cut(s) | 580 |
| BseCI | ATCGAT | 2 cut(s) | 879, 945 |
| BseDI | CCNNGG | 4 cut(s) | 785, 1119, 1129, 1171 |
| BseGI | GGATG | 1 cut(s) | 250 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 205, 682, 695, 758, 1058, 1059 |
| BseMII | CTCAG | 5 cut(s) | 54, 167, 534, 597, 1086 |
| BseRI | GAGGAG | 1 cut(s) | 752 |
| BseSI | GKGCMC | 1 cut(s) | 1065 |
| BseXI | GCAGC | 1 cut(s) | 1009 |
| BseYI | CCCAGC | 1 cut(s) | 204 |
| BshFI | GGCC | 2 cut(s) | 583, 1146 |
| BshNI | GGYRCC | 1 cut(s) | 1067 |
| BshVI | ATCGAT | 2 cut(s) | 879, 945 |
| BslFI | GGGAC | 3 cut(s) | 270, 604, 800 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 205, 682, 695, 758, 1058, 1059 |
| BsmAI | GTCTC | 5 cut(s) | 539, 734, 831, 897, 1109 |
| BsmBI | CGTCTC | 3 cut(s) | 539, 831, 897 |
| BsmFI | GGGAC | 3 cut(s) | 270, 604, 800 |
| BsnI | GGCC | 2 cut(s) | 583, 1146 |
| Bso31I | GGTCTC | 1 cut(s) | 1109 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1065 |
| BspACI | CCGC | 7 cut(s) | 438, 676, 711, 722, 841, 907, 1092 |
| BspANI | GGCC | 2 cut(s) | 583, 1146 |
| BspCNI | CTCAG | 5 cut(s) | 53, 168, 535, 598, 1085 |
| BspDI | ATCGAT | 2 cut(s) | 879, 945 |
| BspHI | TCATGA | 1 cut(s) | 274 |
| BspLI | GGNNCC | 2 cut(s) | 687, 1069 |
| BspPI | GGATC | 5 cut(s) | 2, 185, 415, 830, 896 |
| BspT107I | GGYRCC | 1 cut(s) | 1067 |
| BspTI | CTTAAG | 1 cut(s) | 251 |
| BspTNI | GGTCTC | 1 cut(s) | 1109 |
| BssECI | CCNNGG | 4 cut(s) | 785, 1119, 1129, 1171 |
| BssT1I | CCWWGG | 3 cut(s) | 785, 1129, 1171 |
| Bst2UI | CCWGG | 1 cut(s) | 580 |
| Bst4CI | ACNGT | 6 cut(s) | 62, 141, 301, 745, 1067, 1120 |
| Bst6I | CTCTTC | 2 cut(s) | 1129, 1174 |
| BstAFI | CTTAAG | 1 cut(s) | 251 |
| BstC8I | GCNNGC | 1 cut(s) | 1035 |
| BstDEI | CTNAG | 6 cut(s) | 40, 176, 543, 606, 1072, 1097 |
| BstDSI | CCRYGG | 1 cut(s) | 1119 |
| BstF5I | GGATG | 1 cut(s) | 250 |
| BstMAI | GTCTC | 5 cut(s) | 539, 734, 831, 897, 1109 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 92, 719 |
| BstNI | CCWGG | 1 cut(s) | 580 |
| BstSCI | CCNGG | 1 cut(s) | 578 |
| BstSLI | GKGCMC | 1 cut(s) | 1065 |
| BstV1I | GCAGC | 1 cut(s) | 1009 |
| BstV2I | GAAGAC | 3 cut(s) | 230, 434, 739 |
| Bsu15I | ATCGAT | 2 cut(s) | 879, 945 |
| Bsu36I | CCTNAGG | 1 cut(s) | 606 |
| BsuRI | GGCC | 2 cut(s) | 583, 1146 |
| BsuTUI | ATCGAT | 2 cut(s) | 879, 945 |
| BtgI | CCRYGG | 1 cut(s) | 1119 |
| BtrI | CACGTC | 1 cut(s) | 380 |
| BtsCI | GGATG | 1 cut(s) | 250 |
| BtsI | GCAGTG | 2 cut(s) | 105, 1083 |
| BtsIMutI | CAGTG | 3 cut(s) | 105, 311, 1083 |
| Cac8I | GCNNGC | 1 cut(s) | 1035 |
| CciI | TCATGA | 1 cut(s) | 274 |
| Cfr13I | GGNCC | 1 cut(s) | 137 |
| ClaI | ATCGAT | 2 cut(s) | 879, 945 |
| CseI | GACGC | 2 cut(s) | 556, 969 |
| Csp6I | GTAC | 2 cut(s) | 55, 211 |
| CviAII | CATG | 1 cut(s) | 275 |
| CviQI | GTAC | 2 cut(s) | 55, 211 |
| DdeI | CTNAG | 6 cut(s) | 40, 176, 543, 606, 1072, 1097 |
| DraIII | CACNNNGTG | 3 cut(s) | 854, 920, 1100 |
| Eam1104I | CTCTTC | 2 cut(s) | 1129, 1174 |
| EarI | CTCTTC | 2 cut(s) | 1129, 1174 |
| Eco130I | CCWWGG | 3 cut(s) | 785, 1129, 1171 |
| Eco147I | AGGCCT | 1 cut(s) | 583 |
| Eco31I | GGTCTC | 1 cut(s) | 1109 |
| Eco32I | GATATC | 1 cut(s) | 991 |
| Eco47I | GGWCC | 1 cut(s) | 137 |
| Eco57I | CTGAAG | 3 cut(s) | 200, 435, 935 |
| Eco81I | CCTNAGG | 1 cut(s) | 606 |
| EcoRII | CCWGG | 1 cut(s) | 578 |
| EcoRV | GATATC | 1 cut(s) | 991 |
| EcoT14I | CCWWGG | 3 cut(s) | 785, 1129, 1171 |
| ErhI | CCWWGG | 3 cut(s) | 785, 1129, 1171 |
| Esp3I | CGTCTC | 3 cut(s) | 539, 831, 897 |
| FaeI | CATG | 1 cut(s) | 278 |
| FaqI | GGGAC | 3 cut(s) | 270, 604, 800 |
| FatI | CATG | 1 cut(s) | 274 |
| FauI | CCCGC | 2 cut(s) | 848, 914 |
| FbaI | TGATCA | 1 cut(s) | 522 |
| FblI | GTMKAC | 1 cut(s) | 983 |
| Fnu4HI | GCNGC | 1 cut(s) | 1023 |
| FokI | GGATG | 1 cut(s) | 257 |
| Fsp4HI | GCNGC | 1 cut(s) | 1023 |
| FspBI | CTAG | 3 cut(s) | 195, 464, 714 |
| GluI | GCNGC | 1 cut(s) | 1023 |
| GsaI | CCCAGC | 1 cut(s) | 208 |
| GsuI | CTGGAG | 1 cut(s) | 503 |
| HaeIII | GGCC | 2 cut(s) | 583, 1146 |
| HgaI | GACGC | 2 cut(s) | 556, 969 |
| Hin1II | CATG | 1 cut(s) | 278 |
| HinfI | GANTC | 5 cut(s) | 38, 430, 501, 659, 965 |
| HphI | GGTGA | 3 cut(s) | 163, 644, 1159 |
| Hpy166II | GTNNAC | 1 cut(s) | 984 |
| Hpy188I | TCNGA | 5 cut(s) | 43, 145, 177, 954, 1075 |
| Hpy188III | TCNNGA | 3 cut(s) | 275, 424, 605 |
| Hpy8I | GTNNAC | 1 cut(s) | 984 |
| Hpy99I | CGWCG | 1 cut(s) | 757 |
| HpyAV | CCTTC | 2 cut(s) | 224, 520 |
| HpyCH4III | ACNGT | 6 cut(s) | 62, 141, 301, 745, 1067, 1120 |
| HpyCH4IV | ACGT | 3 cut(s) | 259, 379, 957 |
| HpyCH4V | TGCA | 5 cut(s) | 535, 650, 1025, 1037, 1088 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 92, 719 |
| HpyF3I | CTNAG | 6 cut(s) | 40, 176, 543, 606, 1072, 1097 |
| HpySE526I | ACGT | 3 cut(s) | 259, 379, 957 |
| Hsp92II | CATG | 1 cut(s) | 278 |
| Ksp22I | TGATCA | 1 cut(s) | 522 |
| LmnI | GCTCC | 1 cut(s) | 291 |
| Lsp1109I | GCAGC | 1 cut(s) | 1009 |
| LweI | GCATC | 3 cut(s) | 235, 960, 967 |
| MaeI | CTAG | 3 cut(s) | 195, 464, 714 |
| MaeII | ACGT | 3 cut(s) | 259, 379, 957 |
| MaeIII | GTNAC | 2 cut(s) | 728, 1000 |
| MboII | GAAGA | 6 cut(s) | 235, 439, 739, 941, 1146, 1188 |
| MhlI | GDGCHC | 1 cut(s) | 1065 |
| MluCI | AATT | 7 cut(s) | 23, 385, 456, 600, 613, 669, 800 |
| MlyI | GAGTC | 2 cut(s) | 32, 424 |
| MmeI | TCCRAC | 2 cut(s) | 35, 44 |
| MseI | TTAA | 2 cut(s) | 167, 252 |
| MspA1I | CMGCKG | 1 cut(s) | 1022 |
| MspCI | CTTAAG | 1 cut(s) | 251 |
| MspR9I | CCNGG | 1 cut(s) | 580 |
| MvaI | CCWGG | 1 cut(s) | 580 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 92, 719 |
| NlaIII | CATG | 1 cut(s) | 278 |
| NlaIV | GGNNCC | 2 cut(s) | 687, 1069 |
| NmuCI | GTSAC | 2 cut(s) | 728, 1000 |
| PagI | TCATGA | 1 cut(s) | 274 |
| PceI | AGGCCT | 1 cut(s) | 583 |
| PfeI | GAWTC | 3 cut(s) | 501, 659, 965 |
| PkrI | GCNGC | 1 cut(s) | 1024 |
| PleI | GAGTC | 2 cut(s) | 32, 424 |
| PpsI | GAGTC | 2 cut(s) | 32, 424 |
| Psp6I | CCWGG | 1 cut(s) | 578 |
| PspFI | CCCAGC | 1 cut(s) | 204 |
| PspGI | CCWGG | 1 cut(s) | 578 |
| PspN4I | GGNNCC | 2 cut(s) | 687, 1069 |
| PspPI | GGNCC | 1 cut(s) | 137 |
| PvuII | CAGCTG | 1 cut(s) | 1022 |
| RsaI | GTAC | 2 cut(s) | 56, 212 |
| RsaNI | GTAC | 2 cut(s) | 55, 211 |
| SaqAI | TTAA | 2 cut(s) | 167, 252 |
| SatI | GCNGC | 1 cut(s) | 1023 |
| Sau96I | GGNCC | 1 cut(s) | 137 |
| SchI | GAGTC | 2 cut(s) | 32, 424 |
| ScrFI | CCNGG | 1 cut(s) | 580 |
| SduI | GDGCHC | 1 cut(s) | 1065 |
| SfaNI | GCATC | 3 cut(s) | 235, 960, 967 |
| SinI | GGWCC | 1 cut(s) | 137 |
| SmlI | CTYRAG | 2 cut(s) | 50, 251 |
| SmoI | CTYRAG | 2 cut(s) | 50, 251 |
| Sse9I | AATT | 7 cut(s) | 23, 385, 456, 600, 613, 669, 800 |
| SseBI | AGGCCT | 1 cut(s) | 583 |
| SsiI | CCGC | 7 cut(s) | 438, 676, 711, 722, 841, 907, 1092 |
| SspMI | CTAG | 3 cut(s) | 195, 464, 714 |
| StuI | AGGCCT | 1 cut(s) | 583 |
| StyD4I | CCNGG | 1 cut(s) | 578 |
| StyI | CCWWGG | 3 cut(s) | 785, 1129, 1171 |
| TaaI | ACNGT | 6 cut(s) | 62, 141, 301, 745, 1067, 1120 |
| TaiI | ACGT | 3 cut(s) | 262, 382, 960 |
| TaqI | TCGA | 6 cut(s) | 16, 72, 879, 945, 968, 1156 |
| TasI | AATT | 7 cut(s) | 23, 385, 456, 600, 613, 669, 800 |
| TfiI | GAWTC | 3 cut(s) | 501, 659, 965 |
| Tru1I | TTAA | 2 cut(s) | 167, 252 |
| Tru9I | TTAA | 2 cut(s) | 167, 252 |
| TscAI | CASTG | 3 cut(s) | 112, 311, 1090 |
| TseFI | GTSAC | 2 cut(s) | 728, 1000 |
| TseI | GCWGC | 1 cut(s) | 1022 |
| Tsp45I | GTSAC | 2 cut(s) | 728, 1000 |
| TspDTI | ATGAA | 5 cut(s) | 263, 327, 414, 876, 942 |
| TspGWI | ACGGA | 4 cut(s) | 60, 308, 813, 879 |
| TspRI | CASTG | 3 cut(s) | 112, 311, 1090 |
| Vha464I | CTTAAG | 1 cut(s) | 251 |
| VpaK11BI | GGWCC | 1 cut(s) | 137 |
| XapI | RAATTY | 3 cut(s) | 23, 385, 600 |
| XmiI | GTMKAC | 1 cut(s) | 983 |
| XspI | CTAG | 3 cut(s) | 195, 464, 714 |