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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 84 |
| AclWI | GGATC | 1 cut(s) | 185 |
| AcsI | RAATTY | 2 cut(s) | 23, 600 |
| AcuI | CTGAAG | 2 cut(s) | 200, 435 |
| AfaI | GTAC | 3 cut(s) | 56, 138, 212 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 205, 306 |
| AflIII | ACRYGT | 1 cut(s) | 360 |
| AgsI | TTSAA | 3 cut(s) | 223, 352, 514 |
| AjiI | CACGTC | 1 cut(s) | 380 |
| AluBI | AGCT | 1 cut(s) | 520 |
| AluI | AGCT | 1 cut(s) | 520 |
| Alw26I | GTCTC | 1 cut(s) | 386 |
| AlwI | GGATC | 1 cut(s) | 185 |
| Ama87I | CYCGRG | 1 cut(s) | 605 |
| AoxI | GGCC | 1 cut(s) | 581 |
| ApoI | RAATTY | 2 cut(s) | 23, 600 |
| AspLEI | GCGC | 1 cut(s) | 369 |
| AspS9I | GGNCC | 1 cut(s) | 582 |
| AsuHPI | GGTGA | 1 cut(s) | 106 |
| AvaI | CYCGRG | 1 cut(s) | 605 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 38, 71 |
| BbsI | GAAGAC | 2 cut(s) | 230, 434 |
| BclI | TGATCA | 1 cut(s) | 522 |
| BcoDI | GTCTC | 1 cut(s) | 386 |
| BfaI | CTAG | 4 cut(s) | 15, 195, 464, 579 |
| BfmI | CTRYAG | 1 cut(s) | 391 |
| BmeT110I | CYCGRG | 1 cut(s) | 605 |
| BmgBI | CACGTC | 1 cut(s) | 380 |
| BmgT120I | GGNCC | 1 cut(s) | 582 |
| BmiI | GGNNCC | 1 cut(s) | 402 |
| BmsI | GCATC | 1 cut(s) | 235 |
| BpiI | GAAGAC | 2 cut(s) | 230, 434 |
| BpmI | CTGGAG | 1 cut(s) | 503 |
| BpuEI | CTTGAG | 1 cut(s) | 71 |
| BsaJI | CCNNGG | 1 cut(s) | 606 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 205, 306 |
| Bse1I | ACTGG | 1 cut(s) | 472 |
| Bse3DI | GCAATG | 1 cut(s) | 105 |
| BseDI | CCNNGG | 1 cut(s) | 606 |
| BseGI | GGATG | 1 cut(s) | 250 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 205, 306 |
| BseMI | GCAATG | 1 cut(s) | 105 |
| BseMII | CTCAG | 2 cut(s) | 54, 534 |
| BseNI | ACTGG | 1 cut(s) | 472 |
| BseYI | CCCAGC | 1 cut(s) | 204 |
| BshFI | GGCC | 1 cut(s) | 583 |
| BsiHKCI | CYCGRG | 1 cut(s) | 605 |
| BslFI | GGGAC | 1 cut(s) | 270 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 205, 306 |
| BsmAI | GTCTC | 1 cut(s) | 386 |
| BsmBI | CGTCTC | 1 cut(s) | 386 |
| BsmFI | GGGAC | 1 cut(s) | 270 |
| BsnI | GGCC | 1 cut(s) | 583 |
| BsoBI | CYCGRG | 1 cut(s) | 605 |
| Bsp143I | GATC | 4 cut(s) | 7, 190, 420, 522 |
| BspACI | CCGC | 1 cut(s) | 84 |
| BspANI | GGCC | 1 cut(s) | 583 |
| BspCNI | CTCAG | 2 cut(s) | 53, 535 |
| BspLI | GGNNCC | 1 cut(s) | 402 |
| BspPI | GGATC | 1 cut(s) | 185 |
| BsrDI | GCAATG | 1 cut(s) | 105 |
| BsrI | ACTGG | 1 cut(s) | 472 |
| BssECI | CCNNGG | 1 cut(s) | 606 |
| BssMI | GATC | 4 cut(s) | 7, 190, 420, 522 |
| Bst4CI | ACNGT | 3 cut(s) | 141, 240, 301 |
| BstC8I | GCNNGC | 1 cut(s) | 323 |
| BstDEI | CTNAG | 3 cut(s) | 40, 176, 543 |
| BstF5I | GGATG | 1 cut(s) | 250 |
| BstHHI | GCGC | 1 cut(s) | 369 |
| BstKTI | GATC | 4 cut(s) | 10, 193, 423, 525 |
| BstMAI | GTCTC | 1 cut(s) | 386 |
| BstMBI | GATC | 4 cut(s) | 7, 190, 420, 522 |
| BstNSI | RCATGY | 1 cut(s) | 364 |
| BstSFI | CTRYAG | 1 cut(s) | 391 |
| BstV2I | GAAGAC | 2 cut(s) | 230, 434 |
| BsuRI | GGCC | 1 cut(s) | 583 |
| BtrI | CACGTC | 1 cut(s) | 380 |
| BtsCI | GGATG | 1 cut(s) | 250 |
| BtsIMutI | CAGTG | 1 cut(s) | 311 |
| Cac8I | GCNNGC | 1 cut(s) | 323 |
| CfoI | GCGC | 1 cut(s) | 369 |
| Cfr13I | GGNCC | 1 cut(s) | 582 |
| Csp6I | GTAC | 3 cut(s) | 55, 137, 211 |
| CviAII | CATG | 2 cut(s) | 275, 361 |
| CviJI | RGCY | 7 cut(s) | 5, 198, 481, 520, 542, 583, 611 |
| CviKI_1 | RGCY | 7 cut(s) | 5, 198, 481, 520, 542, 583, 611 |
| CviQI | GTAC | 3 cut(s) | 55, 137, 211 |
| DdeI | CTNAG | 3 cut(s) | 40, 176, 543 |
| DpnI | GATC | 4 cut(s) | 9, 192, 422, 524 |
| DpnII | GATC | 4 cut(s) | 7, 190, 420, 522 |
| Eco57I | CTGAAG | 2 cut(s) | 200, 435 |
| Eco88I | CYCGRG | 1 cut(s) | 605 |
| Esp3I | CGTCTC | 1 cut(s) | 386 |
| FaeI | CATG | 2 cut(s) | 278, 364 |
| FaiI | YATR | 9 cut(s) | 186, 276, 362, 419, 461, 477, 489, 552, 618 |
| FaqI | GGGAC | 1 cut(s) | 270 |
| FatI | CATG | 2 cut(s) | 274, 360 |
| FbaI | TGATCA | 1 cut(s) | 522 |
| FokI | GGATG | 1 cut(s) | 257 |
| FspBI | CTAG | 4 cut(s) | 15, 195, 464, 579 |
| GlaI | GCGC | 1 cut(s) | 368 |
| GsaI | CCCAGC | 1 cut(s) | 208 |
| GsuI | CTGGAG | 1 cut(s) | 503 |
| HaeIII | GGCC | 1 cut(s) | 583 |
| HhaI | GCGC | 1 cut(s) | 369 |
| Hin1II | CATG | 2 cut(s) | 278, 364 |
| Hin6I | GCGC | 1 cut(s) | 367 |
| HinP1I | GCGC | 1 cut(s) | 367 |
| HinfI | GANTC | 3 cut(s) | 38, 430, 501 |
| HphI | GGTGA | 1 cut(s) | 106 |
| Hpy188I | TCNGA | 2 cut(s) | 43, 73 |
| Hpy188III | TCNNGA | 2 cut(s) | 424, 605 |
| HpyAV | CCTTC | 4 cut(s) | 38, 224, 390, 520 |
| HpyCH4III | ACNGT | 3 cut(s) | 141, 240, 301 |
| HpyCH4IV | ACGT | 2 cut(s) | 259, 379 |
| HpyCH4V | TGCA | 1 cut(s) | 535 |
| HpyF3I | CTNAG | 3 cut(s) | 40, 176, 543 |
| HpySE526I | ACGT | 2 cut(s) | 259, 379 |
| Hsp92II | CATG | 2 cut(s) | 278, 364 |
| HspAI | GCGC | 1 cut(s) | 367 |
| Ksp22I | TGATCA | 1 cut(s) | 522 |
| Kzo9I | GATC | 4 cut(s) | 7, 190, 420, 522 |
| LmnI | GCTCC | 1 cut(s) | 291 |
| LpnPI | CCDG | 5 cut(s) | 33, 190, 303, 467, 485 |
| LweI | GCATC | 1 cut(s) | 235 |
| MaeI | CTAG | 4 cut(s) | 15, 195, 464, 579 |
| MaeII | ACGT | 2 cut(s) | 259, 379 |
| MalI | GATC | 4 cut(s) | 9, 192, 422, 524 |
| MboI | GATC | 4 cut(s) | 7, 190, 420, 522 |
| MboII | GAAGA | 2 cut(s) | 235, 439 |
| MluCI | AATT | 4 cut(s) | 23, 385, 456, 600 |
| MlyI | GAGTC | 2 cut(s) | 32, 424 |
| MmeI | TCCRAC | 1 cut(s) | 44 |
| MnlI | CCTC | 3 cut(s) | 540, 550, 601 |
| MseI | TTAA | 3 cut(s) | 167, 252, 634 |
| NdeII | GATC | 4 cut(s) | 7, 190, 420, 522 |
| NlaIII | CATG | 2 cut(s) | 278, 364 |
| NlaIV | GGNNCC | 1 cut(s) | 402 |
| NspI | RCATGY | 1 cut(s) | 364 |
| PciI | ACATGT | 1 cut(s) | 360 |
| PfeI | GAWTC | 1 cut(s) | 501 |
| PleI | GAGTC | 2 cut(s) | 32, 424 |
| PpsI | GAGTC | 2 cut(s) | 32, 424 |
| PscI | ACATGT | 1 cut(s) | 360 |
| PspFI | CCCAGC | 1 cut(s) | 204 |
| PspN4I | GGNNCC | 1 cut(s) | 402 |
| PspPI | GGNCC | 1 cut(s) | 582 |
| RsaI | GTAC | 3 cut(s) | 56, 138, 212 |
| RsaNI | GTAC | 3 cut(s) | 55, 137, 211 |
| SaqAI | TTAA | 3 cut(s) | 167, 252, 634 |
| Sau3AI | GATC | 4 cut(s) | 7, 190, 420, 522 |
| Sau96I | GGNCC | 1 cut(s) | 582 |
| SchI | GAGTC | 2 cut(s) | 32, 424 |
| SfaNI | GCATC | 1 cut(s) | 235 |
| SfcI | CTRYAG | 1 cut(s) | 391 |
| SmlI | CTYRAG | 1 cut(s) | 50 |
| SmoI | CTYRAG | 1 cut(s) | 50 |
| Sse9I | AATT | 4 cut(s) | 23, 385, 456, 600 |
| SsiI | CCGC | 1 cut(s) | 84 |
| SspMI | CTAG | 4 cut(s) | 15, 195, 464, 579 |
| TaaI | ACNGT | 3 cut(s) | 141, 240, 301 |
| TaiI | ACGT | 2 cut(s) | 262, 382 |
| TaqI | TCGA | 1 cut(s) | 423 |
| TasI | AATT | 4 cut(s) | 23, 385, 456, 600 |
| TatI | WGTACW | 1 cut(s) | 136 |
| TfiI | GAWTC | 1 cut(s) | 501 |
| Tru1I | TTAA | 3 cut(s) | 167, 252, 634 |
| Tru9I | TTAA | 3 cut(s) | 167, 252, 634 |
| TscAI | CASTG | 1 cut(s) | 311 |
| TspDTI | ATGAA | 2 cut(s) | 263, 327 |
| TspRI | CASTG | 1 cut(s) | 311 |
| XapI | RAATTY | 2 cut(s) | 23, 600 |
| XceI | RCATGY | 1 cut(s) | 364 |
| XspI | CTAG | 4 cut(s) | 15, 195, 464, 579 |