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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 657 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 693 |
| AclWI | GGATC | 3 cut(s) | 2, 355, 605 |
| AcoI | YGGCCR | 1 cut(s) | 237 |
| AcsI | RAATTY | 3 cut(s) | 23, 325, 540 |
| AcuI | CTGAAG | 2 cut(s) | 375, 567 |
| AcvI | CACGTG | 2 cut(s) | 623, 641 |
| AdeI | CACNNNGTG | 1 cut(s) | 641 |
| AfaI | GTAC | 1 cut(s) | 56 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 64, 235, 246, 693 |
| AflII | CTTAAG | 1 cut(s) | 191 |
| AflIII | ACRYGT | 1 cut(s) | 300 |
| AgsI | TTSAA | 3 cut(s) | 163, 292, 508 |
| AjiI | CACGTC | 4 cut(s) | 320, 605, 653, 744 |
| AluBI | AGCT | 2 cut(s) | 460, 551 |
| AluI | AGCT | 2 cut(s) | 460, 551 |
| AlwI | GGATC | 3 cut(s) | 2, 355, 605 |
| AoxI | GGCC | 3 cut(s) | 237, 679, 716 |
| ApoI | RAATTY | 3 cut(s) | 23, 325, 540 |
| AspLEI | GCGC | 2 cut(s) | 309, 699 |
| AspS9I | GGNCC | 3 cut(s) | 146, 680, 717 |
| AvaII | GGWCC | 1 cut(s) | 146 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 38, 71 |
| BanII | GRGCYC | 1 cut(s) | 674 |
| BbrPI | CACGTG | 2 cut(s) | 623, 641 |
| BbsI | GAAGAC | 2 cut(s) | 170, 374 |
| BccI | CCATC | 3 cut(s) | 122, 137, 698 |
| BceAI | ACGGC | 1 cut(s) | 224 |
| BfaI | CTAG | 1 cut(s) | 404 |
| BfrI | CTTAAG | 1 cut(s) | 191 |
| Bme18I | GGWCC | 1 cut(s) | 146 |
| BmgBI | CACGTC | 4 cut(s) | 320, 605, 653, 744 |
| BmgT120I | GGNCC | 3 cut(s) | 146, 680, 717 |
| BmsI | GCATC | 1 cut(s) | 175 |
| BpiI | GAAGAC | 2 cut(s) | 170, 374 |
| BpmI | CTGGAG | 2 cut(s) | 443, 696 |
| BpuEI | CTTGAG | 1 cut(s) | 71 |
| BsaAI | YACGTR | 2 cut(s) | 623, 641 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 64, 235, 246, 693 |
| Bse1I | ACTGG | 2 cut(s) | 240, 412 |
| BseGI | GGATG | 2 cut(s) | 114, 190 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 64, 235, 246, 693 |
| BseMII | CTCAG | 2 cut(s) | 54, 474 |
| BseNI | ACTGG | 2 cut(s) | 240, 412 |
| BshFI | GGCC | 3 cut(s) | 239, 681, 718 |
| BslFI | GGGAC | 3 cut(s) | 210, 544, 663 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 64, 235, 246, 693 |
| BsmFI | GGGAC | 3 cut(s) | 210, 544, 663 |
| BsnI | GGCC | 3 cut(s) | 239, 681, 718 |
| Bsp1286I | GDGCHC | 1 cut(s) | 674 |
| Bsp143I | GATC | 3 cut(s) | 7, 360, 610 |
| BspANI | GGCC | 3 cut(s) | 239, 681, 718 |
| BspCNI | CTCAG | 2 cut(s) | 53, 475 |
| BspHI | TCATGA | 1 cut(s) | 214 |
| BspPI | GGATC | 3 cut(s) | 2, 355, 605 |
| BspTI | CTTAAG | 1 cut(s) | 191 |
| BsrI | ACTGG | 2 cut(s) | 240, 412 |
| BssMI | GATC | 3 cut(s) | 7, 360, 610 |
| Bst4CI | ACNGT | 4 cut(s) | 62, 85, 150, 180 |
| BstAFI | CTTAAG | 1 cut(s) | 191 |
| BstBAI | YACGTR | 2 cut(s) | 623, 641 |
| BstDEI | CTNAG | 2 cut(s) | 40, 483 |
| BstF5I | GGATG | 2 cut(s) | 114, 190 |
| BstHHI | GCGC | 2 cut(s) | 309, 699 |
| BstKTI | GATC | 3 cut(s) | 10, 363, 613 |
| BstMBI | GATC | 3 cut(s) | 7, 360, 610 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 678, 715 |
| BstNSI | RCATGY | 1 cut(s) | 304 |
| BstV2I | GAAGAC | 2 cut(s) | 170, 374 |
| BsuRI | GGCC | 3 cut(s) | 239, 681, 718 |
| BtrI | CACGTC | 4 cut(s) | 320, 605, 653, 744 |
| BtsCI | GGATG | 2 cut(s) | 114, 190 |
| BtsI | GCAGTG | 1 cut(s) | 105 |
| BtsIMutI | CAGTG | 3 cut(s) | 105, 126, 251 |
| CciI | TCATGA | 1 cut(s) | 214 |
| CfoI | GCGC | 2 cut(s) | 309, 699 |
| Cfr13I | GGNCC | 3 cut(s) | 146, 680, 717 |
| Csp6I | GTAC | 1 cut(s) | 55 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 634, 669 |
| CviAII | CATG | 2 cut(s) | 215, 301 |
| CviQI | GTAC | 1 cut(s) | 55 |
| DdeI | CTNAG | 2 cut(s) | 40, 483 |
| DpnI | GATC | 3 cut(s) | 9, 362, 612 |
| DpnII | GATC | 3 cut(s) | 7, 360, 610 |
| DraIII | CACNNNGTG | 1 cut(s) | 641 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 657 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 657 |
| EaeI | YGGCCR | 1 cut(s) | 237 |
| Eco24I | GRGCYC | 1 cut(s) | 674 |
| Eco47I | GGWCC | 1 cut(s) | 146 |
| Eco57I | CTGAAG | 2 cut(s) | 375, 567 |
| Eco72I | CACGTG | 2 cut(s) | 623, 641 |
| EcoO109I | RGGNCCY | 2 cut(s) | 680, 717 |
| EcoT38I | GRGCYC | 1 cut(s) | 674 |
| FaeI | CATG | 2 cut(s) | 218, 304 |
| FaqI | GGGAC | 3 cut(s) | 210, 544, 663 |
| FatI | CATG | 2 cut(s) | 214, 300 |
| FokI | GGATG | 2 cut(s) | 101, 197 |
| FriOI | GRGCYC | 1 cut(s) | 674 |
| FspBI | CTAG | 1 cut(s) | 404 |
| GlaI | GCGC | 2 cut(s) | 308, 698 |
| GsuI | CTGGAG | 2 cut(s) | 443, 696 |
| HaeIII | GGCC | 3 cut(s) | 239, 681, 718 |
| HhaI | GCGC | 2 cut(s) | 309, 699 |
| Hin1II | CATG | 2 cut(s) | 218, 304 |
| Hin6I | GCGC | 2 cut(s) | 307, 697 |
| HinP1I | GCGC | 2 cut(s) | 307, 697 |
| HinfI | GANTC | 3 cut(s) | 38, 370, 441 |
| Hpy188I | TCNGA | 2 cut(s) | 43, 73 |
| Hpy188III | TCNNGA | 4 cut(s) | 215, 364, 545, 675 |
| HpyAV | CCTTC | 1 cut(s) | 38 |
| HpyCH4III | ACNGT | 4 cut(s) | 62, 85, 150, 180 |
| HpyCH4IV | ACGT | 7 cut(s) | 199, 319, 604, 622, 640, 652, 743 |
| HpyCH4V | TGCA | 6 cut(s) | 317, 475, 518, 590, 635, 729 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 678, 715 |
| HpyF3I | CTNAG | 2 cut(s) | 40, 483 |
| HpySE526I | ACGT | 7 cut(s) | 199, 319, 604, 622, 640, 652, 743 |
| Hsp92II | CATG | 2 cut(s) | 218, 304 |
| HspAI | GCGC | 2 cut(s) | 307, 697 |
| Kzo9I | GATC | 3 cut(s) | 7, 360, 610 |
| LmnI | GCTCC | 1 cut(s) | 231 |
| LpnPI | CCDG | 8 cut(s) | 33, 221, 243, 377, 407, 425, 558, 660 |
| LweI | GCATC | 1 cut(s) | 175 |
| MaeI | CTAG | 1 cut(s) | 404 |
| MaeII | ACGT | 7 cut(s) | 199, 319, 604, 622, 640, 652, 743 |
| MaeIII | GTNAC | 1 cut(s) | 641 |
| MalI | GATC | 3 cut(s) | 9, 362, 612 |
| MboI | GATC | 3 cut(s) | 7, 360, 610 |
| MboII | GAAGA | 3 cut(s) | 175, 362, 379 |
| MhlI | GDGCHC | 1 cut(s) | 674 |
| MluCI | AATT | 4 cut(s) | 23, 325, 540, 553 |
| MlyI | GAGTC | 2 cut(s) | 32, 364 |
| MmeI | TCCRAC | 3 cut(s) | 35, 580, 719 |
| MnlI | CCTC | 6 cut(s) | 480, 490, 671, 693, 708, 730 |
| MseI | TTAA | 2 cut(s) | 192, 453 |
| MslI | CAYNNNNRTG | 1 cut(s) | 585 |
| MspCI | CTTAAG | 1 cut(s) | 191 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 678, 715 |
| NdeII | GATC | 3 cut(s) | 7, 360, 610 |
| NlaIII | CATG | 2 cut(s) | 218, 304 |
| NmuCI | GTSAC | 1 cut(s) | 641 |
| NspI | RCATGY | 1 cut(s) | 304 |
| PagI | TCATGA | 1 cut(s) | 214 |
| PciI | ACATGT | 1 cut(s) | 300 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 658 |
| PfeI | GAWTC | 1 cut(s) | 441 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 693 |
| PleI | GAGTC | 2 cut(s) | 32, 364 |
| PmaCI | CACGTG | 2 cut(s) | 623, 641 |
| PmlI | CACGTG | 2 cut(s) | 623, 641 |
| PpsI | GAGTC | 2 cut(s) | 32, 364 |
| Ppu21I | YACGTR | 2 cut(s) | 623, 641 |
| PscI | ACATGT | 1 cut(s) | 300 |
| PspCI | CACGTG | 2 cut(s) | 623, 641 |
| PspPI | GGNCC | 3 cut(s) | 146, 680, 717 |
| RsaI | GTAC | 1 cut(s) | 56 |
| RsaNI | GTAC | 1 cut(s) | 55 |
| RseI | CAYNNNNRTG | 1 cut(s) | 585 |
| SaqAI | TTAA | 2 cut(s) | 192, 453 |
| Sau3AI | GATC | 3 cut(s) | 7, 360, 610 |
| Sau96I | GGNCC | 3 cut(s) | 146, 680, 717 |
| SchI | GAGTC | 2 cut(s) | 32, 364 |
| SduI | GDGCHC | 1 cut(s) | 674 |
| SfaNI | GCATC | 1 cut(s) | 175 |
| SinI | GGWCC | 1 cut(s) | 146 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 585 |
| SmlI | CTYRAG | 2 cut(s) | 50, 191 |
| SmoI | CTYRAG | 2 cut(s) | 50, 191 |
| Sse9I | AATT | 4 cut(s) | 23, 325, 540, 553 |
| SspMI | CTAG | 1 cut(s) | 404 |
| TaaI | ACNGT | 4 cut(s) | 62, 85, 150, 180 |
| TaiI | ACGT | 7 cut(s) | 202, 322, 607, 625, 643, 655, 746 |
| TaqI | TCGA | 1 cut(s) | 16 |
| TasI | AATT | 4 cut(s) | 23, 325, 540, 553 |
| TfiI | GAWTC | 1 cut(s) | 441 |
| Tru1I | TTAA | 2 cut(s) | 192, 453 |
| Tru9I | TTAA | 2 cut(s) | 192, 453 |
| TscAI | CASTG | 3 cut(s) | 112, 133, 251 |
| TseFI | GTSAC | 1 cut(s) | 641 |
| Tsp45I | GTSAC | 1 cut(s) | 641 |
| TspDTI | ATGAA | 2 cut(s) | 203, 267 |
| TspRI | CASTG | 3 cut(s) | 112, 133, 251 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 693 |
| Vha464I | CTTAAG | 1 cut(s) | 191 |
| VpaK11BI | GGWCC | 1 cut(s) | 146 |
| XapI | RAATTY | 3 cut(s) | 23, 325, 540 |
| XceI | RCATGY | 1 cut(s) | 304 |
| XspI | CTAG | 1 cut(s) | 404 |