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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 816 |
| AccII | CGCG | 1 cut(s) | 722 |
| AccIII | TCCGGA | 1 cut(s) | 613 |
| AciI | CCGC | 2 cut(s) | 328, 722 |
| AclWI | GGATC | 4 cut(s) | 2, 194, 424, 674 |
| AcsI | RAATTY | 3 cut(s) | 23, 394, 609 |
| AcuI | CTGAAG | 1 cut(s) | 815 |
| AcvI | CACGTG | 1 cut(s) | 710 |
| AdeI | CACNNNGTG | 1 cut(s) | 710 |
| AfaI | GTAC | 4 cut(s) | 56, 221, 676, 895 |
| AfeI | AGCGCT | 1 cut(s) | 465 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 64, 214, 315 |
| AflII | CTTAAG | 1 cut(s) | 260 |
| AgsI | TTSAA | 6 cut(s) | 23, 227, 232, 361, 523, 577 |
| AhlI | ACTAGT | 1 cut(s) | 472 |
| AjiI | CACGTC | 1 cut(s) | 389 |
| AluBI | AGCT | 2 cut(s) | 160, 529 |
| AluI | AGCT | 2 cut(s) | 160, 529 |
| AlwI | GGATC | 4 cut(s) | 2, 194, 424, 674 |
| Aor13HI | TCCGGA | 1 cut(s) | 613 |
| Aor51HI | AGCGCT | 1 cut(s) | 465 |
| AoxI | GGCC | 4 cut(s) | 590, 738, 747, 783 |
| ApoI | RAATTY | 3 cut(s) | 23, 394, 609 |
| AspLEI | GCGC | 3 cut(s) | 378, 466, 767 |
| AspS9I | GGNCC | 3 cut(s) | 146, 738, 784 |
| AvaII | GGWCC | 1 cut(s) | 146 |
| BaeGI | GKGCMC | 1 cut(s) | 819 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 38, 71 |
| BanI | GGYRCC | 1 cut(s) | 816 |
| BbrPI | CACGTG | 1 cut(s) | 710 |
| BbsI | GAAGAC | 2 cut(s) | 239, 443 |
| BccI | CCATC | 3 cut(s) | 122, 137, 766 |
| BclI | TGATCA | 1 cut(s) | 531 |
| BcuI | ACTAGT | 1 cut(s) | 472 |
| BfaI | CTAG | 3 cut(s) | 204, 473, 788 |
| BfmI | CTRYAG | 1 cut(s) | 867 |
| BfoI | RGCGCY | 1 cut(s) | 467 |
| BfrI | CTTAAG | 1 cut(s) | 260 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 92, 746 |
| Bme18I | GGWCC | 1 cut(s) | 146 |
| BmgBI | CACGTC | 1 cut(s) | 389 |
| BmgT120I | GGNCC | 3 cut(s) | 146, 738, 784 |
| BmiI | GGNNCC | 1 cut(s) | 818 |
| BmsI | GCATC | 1 cut(s) | 244 |
| BpiI | GAAGAC | 2 cut(s) | 239, 443 |
| BpmI | CTGGAG | 1 cut(s) | 512 |
| BpuEI | CTTGAG | 1 cut(s) | 71 |
| BsaAI | YACGTR | 1 cut(s) | 710 |
| BsaJI | CCNNGG | 1 cut(s) | 741 |
| BsaWI | WCCGGW | 1 cut(s) | 613 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 64, 214, 315 |
| Bse1I | ACTGG | 1 cut(s) | 481 |
| Bse3DI | GCAATG | 1 cut(s) | 861 |
| BseAI | TCCGGA | 1 cut(s) | 613 |
| BseDI | CCNNGG | 1 cut(s) | 741 |
| BseGI | GGATG | 1 cut(s) | 259 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 64, 214, 315 |
| BseMI | GCAATG | 1 cut(s) | 861 |
| BseMII | CTCAG | 3 cut(s) | 54, 176, 543 |
| BseNI | ACTGG | 1 cut(s) | 481 |
| BseSI | GKGCMC | 1 cut(s) | 819 |
| BseYI | CCCAGC | 1 cut(s) | 213 |
| Bsh1236I | CGCG | 1 cut(s) | 722 |
| BshFI | GGCC | 4 cut(s) | 592, 740, 749, 785 |
| BshNI | GGYRCC | 1 cut(s) | 816 |
| BsiSI | CCGG | 1 cut(s) | 614 |
| BslFI | GGGAC | 2 cut(s) | 279, 613 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 64, 214, 315 |
| BsmFI | GGGAC | 2 cut(s) | 279, 613 |
| BsnI | GGCC | 4 cut(s) | 592, 740, 749, 785 |
| Bsp1286I | GDGCHC | 1 cut(s) | 819 |
| Bsp13I | TCCGGA | 1 cut(s) | 613 |
| Bsp143I | GATC | 5 cut(s) | 7, 199, 429, 531, 679 |
| Bsp19I | CCATGG | 1 cut(s) | 741 |
| BspACI | CCGC | 2 cut(s) | 328, 722 |
| BspANI | GGCC | 4 cut(s) | 592, 740, 749, 785 |
| BspCNI | CTCAG | 3 cut(s) | 53, 177, 544 |
| BspEI | TCCGGA | 1 cut(s) | 613 |
| BspFNI | CGCG | 1 cut(s) | 722 |
| BspHI | TCATGA | 1 cut(s) | 283 |
| BspLI | GGNNCC | 1 cut(s) | 818 |
| BspPI | GGATC | 4 cut(s) | 2, 194, 424, 674 |
| BspT107I | GGYRCC | 1 cut(s) | 816 |
| BspTI | CTTAAG | 1 cut(s) | 260 |
| BsrDI | GCAATG | 1 cut(s) | 861 |
| BsrI | ACTGG | 1 cut(s) | 481 |
| BssECI | CCNNGG | 1 cut(s) | 741 |
| BssMI | GATC | 5 cut(s) | 7, 199, 429, 531, 679 |
| BssT1I | CCWWGG | 1 cut(s) | 741 |
| Bst4CI | ACNGT | 3 cut(s) | 150, 249, 310 |
| BstAFI | CTTAAG | 1 cut(s) | 260 |
| BstBAI | YACGTR | 1 cut(s) | 710 |
| BstC8I | GCNNGC | 3 cut(s) | 332, 783, 912 |
| BstDEI | CTNAG | 4 cut(s) | 40, 185, 552, 821 |
| BstDSI | CCRYGG | 1 cut(s) | 741 |
| BstF5I | GGATG | 1 cut(s) | 259 |
| BstFNI | CGCG | 1 cut(s) | 722 |
| BstH2I | RGCGCY | 1 cut(s) | 467 |
| BstHHI | GCGC | 3 cut(s) | 378, 466, 767 |
| BstKTI | GATC | 5 cut(s) | 10, 202, 432, 534, 682 |
| BstMBI | GATC | 5 cut(s) | 7, 199, 429, 531, 679 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 92, 746 |
| BstSFI | CTRYAG | 1 cut(s) | 867 |
| BstSLI | GKGCMC | 1 cut(s) | 819 |
| BstUI | CGCG | 1 cut(s) | 722 |
| BstV2I | GAAGAC | 2 cut(s) | 239, 443 |
| BsuRI | GGCC | 4 cut(s) | 592, 740, 749, 785 |
| BtgI | CCRYGG | 1 cut(s) | 741 |
| BtrI | CACGTC | 1 cut(s) | 389 |
| BtsCI | GGATG | 1 cut(s) | 259 |
| BtsI | GCAGTG | 1 cut(s) | 105 |
| BtsIMutI | CAGTG | 3 cut(s) | 105, 126, 320 |
| Cac8I | GCNNGC | 3 cut(s) | 332, 783, 912 |
| CciI | TCATGA | 1 cut(s) | 283 |
| CfoI | GCGC | 3 cut(s) | 378, 466, 767 |
| Cfr13I | GGNCC | 3 cut(s) | 146, 738, 784 |
| CseI | GACGC | 1 cut(s) | 728 |
| Csp6I | GTAC | 4 cut(s) | 55, 220, 675, 894 |
| CviAII | CATG | 4 cut(s) | 284, 690, 742, 863 |
| CviQI | GTAC | 4 cut(s) | 55, 220, 675, 894 |
| DdeI | CTNAG | 4 cut(s) | 40, 185, 552, 821 |
| DpnI | GATC | 5 cut(s) | 9, 201, 431, 533, 681 |
| DpnII | GATC | 5 cut(s) | 7, 199, 429, 531, 679 |
| DraIII | CACNNNGTG | 1 cut(s) | 710 |
| Eco130I | CCWWGG | 1 cut(s) | 741 |
| Eco147I | AGGCCT | 2 cut(s) | 592, 749 |
| Eco47I | GGWCC | 1 cut(s) | 146 |
| Eco47III | AGCGCT | 1 cut(s) | 465 |
| Eco57I | CTGAAG | 1 cut(s) | 815 |
| Eco72I | CACGTG | 1 cut(s) | 710 |
| EcoT14I | CCWWGG | 1 cut(s) | 741 |
| ErhI | CCWWGG | 1 cut(s) | 741 |
| FaeI | CATG | 4 cut(s) | 287, 693, 745, 866 |
| FaqI | GGGAC | 2 cut(s) | 279, 613 |
| FatI | CATG | 4 cut(s) | 283, 689, 741, 862 |
| FauI | CCCGC | 1 cut(s) | 715 |
| FbaI | TGATCA | 1 cut(s) | 531 |
| FokI | GGATG | 1 cut(s) | 266 |
| FspBI | CTAG | 3 cut(s) | 204, 473, 788 |
| GlaI | GCGC | 3 cut(s) | 377, 465, 766 |
| GsaI | CCCAGC | 1 cut(s) | 217 |
| GsuI | CTGGAG | 1 cut(s) | 512 |
| HaeII | RGCGCY | 1 cut(s) | 467 |
| HaeIII | GGCC | 4 cut(s) | 592, 740, 749, 785 |
| HapII | CCGG | 1 cut(s) | 614 |
| HgaI | GACGC | 1 cut(s) | 728 |
| HhaI | GCGC | 3 cut(s) | 378, 466, 767 |
| Hin1II | CATG | 4 cut(s) | 287, 693, 745, 866 |
| Hin6I | GCGC | 3 cut(s) | 376, 464, 765 |
| HinP1I | GCGC | 3 cut(s) | 376, 464, 765 |
| HinfI | GANTC | 4 cut(s) | 38, 439, 510, 878 |
| HpaII | CCGG | 1 cut(s) | 614 |
| Hpy166II | GTNNAC | 1 cut(s) | 478 |
| Hpy188I | TCNGA | 3 cut(s) | 43, 73, 186 |
| Hpy188III | TCNNGA | 3 cut(s) | 284, 433, 614 |
| Hpy8I | GTNNAC | 1 cut(s) | 478 |
| HpyAV | CCTTC | 5 cut(s) | 38, 233, 529, 760, 839 |
| HpyCH4III | ACNGT | 3 cut(s) | 150, 249, 310 |
| HpyCH4IV | ACGT | 4 cut(s) | 268, 388, 673, 709 |
| HpyCH4V | TGCA | 4 cut(s) | 544, 659, 704, 810 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 92, 746 |
| HpyF3I | CTNAG | 4 cut(s) | 40, 185, 552, 821 |
| HpySE526I | ACGT | 4 cut(s) | 268, 388, 673, 709 |
| Hsp92II | CATG | 4 cut(s) | 287, 693, 745, 866 |
| HspAI | GCGC | 3 cut(s) | 376, 464, 765 |
| Kpn2I | TCCGGA | 1 cut(s) | 613 |
| Ksp22I | TGATCA | 1 cut(s) | 531 |
| Kzo9I | GATC | 5 cut(s) | 7, 199, 429, 531, 679 |
| LweI | GCATC | 1 cut(s) | 244 |
| MaeI | CTAG | 3 cut(s) | 204, 473, 788 |
| MaeII | ACGT | 4 cut(s) | 268, 388, 673, 709 |
| MalI | GATC | 5 cut(s) | 9, 201, 431, 533, 681 |
| MboI | GATC | 5 cut(s) | 7, 199, 429, 531, 679 |
| MboII | GAAGA | 3 cut(s) | 244, 431, 448 |
| MfeI | CAATTG | 1 cut(s) | 227 |
| MhlI | GDGCHC | 1 cut(s) | 819 |
| MluCI | AATT | 5 cut(s) | 23, 227, 394, 609, 622 |
| MlyI | GAGTC | 3 cut(s) | 32, 433, 887 |
| MmeI | TCCRAC | 2 cut(s) | 35, 649 |
| MnlI | CCTC | 6 cut(s) | 180, 549, 559, 610, 657, 739 |
| MroI | TCCGGA | 1 cut(s) | 613 |
| MseI | TTAA | 2 cut(s) | 176, 261 |
| MspCI | CTTAAG | 1 cut(s) | 260 |
| MspI | CCGG | 1 cut(s) | 614 |
| MunI | CAATTG | 1 cut(s) | 227 |
| MvnI | CGCG | 1 cut(s) | 722 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 92, 746 |
| NcoI | CCATGG | 1 cut(s) | 741 |
| NdeII | GATC | 5 cut(s) | 7, 199, 429, 531, 679 |
| NlaIII | CATG | 4 cut(s) | 287, 693, 745, 866 |
| NlaIV | GGNNCC | 1 cut(s) | 818 |
| PagI | TCATGA | 1 cut(s) | 283 |
| PceI | AGGCCT | 2 cut(s) | 592, 749 |
| PfeI | GAWTC | 1 cut(s) | 510 |
| PleI | GAGTC | 3 cut(s) | 32, 433, 886 |
| PmaCI | CACGTG | 1 cut(s) | 710 |
| PmlI | CACGTG | 1 cut(s) | 710 |
| PpsI | GAGTC | 3 cut(s) | 32, 433, 886 |
| Ppu21I | YACGTR | 1 cut(s) | 710 |
| PspCI | CACGTG | 1 cut(s) | 710 |
| PspFI | CCCAGC | 1 cut(s) | 213 |
| PspN4I | GGNNCC | 1 cut(s) | 818 |
| PspPI | GGNCC | 3 cut(s) | 146, 738, 784 |
| RsaI | GTAC | 4 cut(s) | 56, 221, 676, 895 |
| RsaNI | GTAC | 4 cut(s) | 55, 220, 675, 894 |
| SaqAI | TTAA | 2 cut(s) | 176, 261 |
| Sau3AI | GATC | 5 cut(s) | 7, 199, 429, 531, 679 |
| Sau96I | GGNCC | 3 cut(s) | 146, 738, 784 |
| SchI | GAGTC | 3 cut(s) | 32, 433, 887 |
| SduI | GDGCHC | 1 cut(s) | 819 |
| SfaNI | GCATC | 1 cut(s) | 244 |
| SfcI | CTRYAG | 1 cut(s) | 867 |
| SfiI | GGCCNNNNNGGCC | 1 cut(s) | 746 |
| SinI | GGWCC | 1 cut(s) | 146 |
| SmlI | CTYRAG | 2 cut(s) | 50, 260 |
| SmoI | CTYRAG | 2 cut(s) | 50, 260 |
| SpeI | ACTAGT | 1 cut(s) | 472 |
| Sse9I | AATT | 5 cut(s) | 23, 227, 394, 609, 622 |
| SseBI | AGGCCT | 2 cut(s) | 592, 749 |
| SsiI | CCGC | 2 cut(s) | 328, 722 |
| SspMI | CTAG | 3 cut(s) | 204, 473, 788 |
| StuI | AGGCCT | 2 cut(s) | 592, 749 |
| StyI | CCWWGG | 1 cut(s) | 741 |
| TaaI | ACNGT | 3 cut(s) | 150, 249, 310 |
| TaiI | ACGT | 4 cut(s) | 271, 391, 676, 712 |
| TaqI | TCGA | 1 cut(s) | 16 |
| TasI | AATT | 5 cut(s) | 23, 227, 394, 609, 622 |
| TfiI | GAWTC | 1 cut(s) | 510 |
| Tru1I | TTAA | 2 cut(s) | 176, 261 |
| Tru9I | TTAA | 2 cut(s) | 176, 261 |
| TscAI | CASTG | 3 cut(s) | 112, 133, 320 |
| TspDTI | ATGAA | 3 cut(s) | 272, 336, 872 |
| TspRI | CASTG | 3 cut(s) | 112, 133, 320 |
| Vha464I | CTTAAG | 1 cut(s) | 260 |
| VpaK11BI | GGWCC | 1 cut(s) | 146 |
| XapI | RAATTY | 3 cut(s) | 23, 394, 609 |
| XspI | CTAG | 3 cut(s) | 204, 473, 788 |