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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 35 |
| AciI | CCGC | 4 cut(s) | 328, 732, 749, 752 |
| AclWI | GGATC | 3 cut(s) | 194, 527, 787 |
| AcoI | YGGCCR | 1 cut(s) | 306 |
| AcsI | RAATTY | 1 cut(s) | 462 |
| AcuI | CTGAAG | 1 cut(s) | 209 |
| AcvI | CACGTG | 1 cut(s) | 562 |
| AcyI | GRCGYC | 1 cut(s) | 255 |
| AdeI | CACNNNGTG | 1 cut(s) | 562 |
| AfaI | GTAC | 2 cut(s) | 56, 221 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 64, 214, 304, 315 |
| AflII | CTTAAG | 1 cut(s) | 260 |
| AflIII | ACRYGT | 1 cut(s) | 369 |
| AgsI | TTSAA | 4 cut(s) | 232, 314, 361, 787 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 577 |
| AjiI | CACGTC | 3 cut(s) | 389, 527, 574 |
| AluBI | AGCT | 1 cut(s) | 810 |
| AluI | AGCT | 1 cut(s) | 810 |
| Alw26I | GTCTC | 4 cut(s) | 43, 259, 395, 700 |
| AlwI | GGATC | 3 cut(s) | 194, 527, 787 |
| Ama87I | CYCGRG | 1 cut(s) | 467 |
| AoxI | GGCC | 3 cut(s) | 146, 306, 443 |
| ApeKI | GCWGC | 2 cut(s) | 721, 734 |
| ApoI | RAATTY | 1 cut(s) | 462 |
| AspLEI | GCGC | 1 cut(s) | 378 |
| AspS9I | GGNCC | 2 cut(s) | 146, 444 |
| AvaI | CYCGRG | 1 cut(s) | 467 |
| BauI | CACGAG | 1 cut(s) | 826 |
| BbrPI | CACGTG | 1 cut(s) | 562 |
| BbsI | GAAGAC | 1 cut(s) | 239 |
| BbvI | GCAGC | 2 cut(s) | 733, 746 |
| BccI | CCATC | 4 cut(s) | 66, 122, 137, 157 |
| BceAI | ACGGC | 1 cut(s) | 293 |
| BcoDI | GTCTC | 4 cut(s) | 43, 259, 395, 700 |
| BfaI | CTAG | 3 cut(s) | 204, 299, 807 |
| BfmI | CTRYAG | 1 cut(s) | 744 |
| BfrI | CTTAAG | 1 cut(s) | 260 |
| BisI | GCNGC | 4 cut(s) | 722, 735, 750, 753 |
| BlsI | GCNGC | 4 cut(s) | 723, 736, 751, 754 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 577 |
| BmeT110I | CYCGRG | 1 cut(s) | 467 |
| BmgBI | CACGTC | 3 cut(s) | 389, 527, 574 |
| BmgT120I | GGNCC | 2 cut(s) | 146, 444 |
| BmrI | ACTGGG | 1 cut(s) | 459 |
| BmuI | ACTGGG | 1 cut(s) | 459 |
| BpiI | GAAGAC | 1 cut(s) | 239 |
| BpmI | CTGGAG | 1 cut(s) | 639 |
| BpuEI | CTTGAG | 2 cut(s) | 448, 794 |
| BsaAI | YACGTR | 1 cut(s) | 562 |
| BsaHI | GRCGYC | 1 cut(s) | 255 |
| BsaI | GGTCTC | 1 cut(s) | 43 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 64, 214, 304, 315 |
| Bse1I | ACTGG | 2 cut(s) | 454, 715 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 64, 214, 304, 315 |
| BseMII | CTCAG | 2 cut(s) | 54, 396 |
| BseNI | ACTGG | 2 cut(s) | 454, 715 |
| BseRI | GAGGAG | 1 cut(s) | 642 |
| BseXI | GCAGC | 2 cut(s) | 733, 746 |
| BseYI | CCCAGC | 1 cut(s) | 213 |
| BshFI | GGCC | 3 cut(s) | 148, 308, 445 |
| BsiHKCI | CYCGRG | 1 cut(s) | 467 |
| BslFI | GGGAC | 3 cut(s) | 266, 466, 584 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 64, 214, 304, 315 |
| BsmAI | GTCTC | 4 cut(s) | 43, 259, 395, 700 |
| BsmBI | CGTCTC | 2 cut(s) | 259, 395 |
| BsmFI | GGGAC | 3 cut(s) | 266, 466, 584 |
| BsnI | GGCC | 3 cut(s) | 148, 308, 445 |
| Bso31I | GGTCTC | 1 cut(s) | 43 |
| BsoBI | CYCGRG | 1 cut(s) | 467 |
| Bsp143I | GATC | 4 cut(s) | 7, 199, 532, 792 |
| BspACI | CCGC | 4 cut(s) | 328, 732, 749, 752 |
| BspANI | GGCC | 3 cut(s) | 148, 308, 445 |
| BspCNI | CTCAG | 2 cut(s) | 53, 397 |
| BspHI | TCATGA | 1 cut(s) | 283 |
| BspPI | GGATC | 3 cut(s) | 194, 527, 787 |
| BspTI | CTTAAG | 1 cut(s) | 260 |
| BspTNI | GGTCTC | 1 cut(s) | 43 |
| BsrI | ACTGG | 2 cut(s) | 454, 715 |
| BssMI | GATC | 4 cut(s) | 7, 199, 532, 792 |
| BssNI | GRCGYC | 1 cut(s) | 255 |
| BssSI | CACGAG | 1 cut(s) | 826 |
| Bst2BI | CACGAG | 1 cut(s) | 826 |
| Bst4CI | ACNGT | 1 cut(s) | 249 |
| BstACI | GRCGYC | 1 cut(s) | 255 |
| BstAFI | CTTAAG | 1 cut(s) | 260 |
| BstBAI | YACGTR | 1 cut(s) | 562 |
| BstC8I | GCNNGC | 1 cut(s) | 332 |
| BstDEI | CTNAG | 2 cut(s) | 40, 405 |
| BstHHI | GCGC | 1 cut(s) | 378 |
| BstKTI | GATC | 4 cut(s) | 10, 202, 535, 795 |
| BstMAI | GTCTC | 4 cut(s) | 43, 259, 395, 700 |
| BstMBI | GATC | 4 cut(s) | 7, 199, 532, 792 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 92 |
| BstNSI | RCATGY | 1 cut(s) | 373 |
| BstSFI | CTRYAG | 1 cut(s) | 744 |
| BstV1I | GCAGC | 2 cut(s) | 733, 746 |
| BstV2I | GAAGAC | 1 cut(s) | 239 |
| BsuRI | GGCC | 3 cut(s) | 148, 308, 445 |
| BtrI | CACGTC | 3 cut(s) | 389, 527, 574 |
| BtsI | GCAGTG | 2 cut(s) | 105, 737 |
| BtsIMutI | CAGTG | 5 cut(s) | 105, 254, 447, 722, 737 |
| Cac8I | GCNNGC | 1 cut(s) | 332 |
| CciI | TCATGA | 1 cut(s) | 283 |
| CfoI | GCGC | 1 cut(s) | 378 |
| Cfr13I | GGNCC | 2 cut(s) | 146, 444 |
| CseI | GACGC | 1 cut(s) | 263 |
| Csp6I | GTAC | 2 cut(s) | 55, 220 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 555, 590 |
| CviAII | CATG | 4 cut(s) | 284, 370, 544, 686 |
| CviQI | GTAC | 2 cut(s) | 55, 220 |
| DdeI | CTNAG | 2 cut(s) | 40, 405 |
| DpnI | GATC | 4 cut(s) | 9, 201, 534, 794 |
| DpnII | GATC | 4 cut(s) | 7, 199, 532, 792 |
| DraIII | CACNNNGTG | 1 cut(s) | 562 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 35 |
| DriI | GACNNNNNGTC | 1 cut(s) | 577 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 35 |
| EaeI | YGGCCR | 1 cut(s) | 306 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 577 |
| Eco31I | GGTCTC | 1 cut(s) | 43 |
| Eco57I | CTGAAG | 1 cut(s) | 209 |
| Eco72I | CACGTG | 1 cut(s) | 562 |
| Eco88I | CYCGRG | 1 cut(s) | 467 |
| Esp3I | CGTCTC | 2 cut(s) | 259, 395 |
| FaeI | CATG | 4 cut(s) | 287, 373, 547, 689 |
| FaiI | YATR | 8 cut(s) | 195, 285, 305, 371, 414, 480, 545, 687 |
| FaqI | GGGAC | 3 cut(s) | 266, 466, 584 |
| FatI | CATG | 4 cut(s) | 283, 369, 543, 685 |
| Fnu4HI | GCNGC | 4 cut(s) | 722, 735, 750, 753 |
| Fsp4HI | GCNGC | 4 cut(s) | 722, 735, 750, 753 |
| FspBI | CTAG | 3 cut(s) | 204, 299, 807 |
| GlaI | GCGC | 1 cut(s) | 377 |
| GluI | GCNGC | 4 cut(s) | 722, 735, 750, 753 |
| GsaI | CCCAGC | 1 cut(s) | 217 |
| GsuI | CTGGAG | 1 cut(s) | 639 |
| HaeIII | GGCC | 3 cut(s) | 148, 308, 445 |
| HgaI | GACGC | 1 cut(s) | 263 |
| HhaI | GCGC | 1 cut(s) | 378 |
| Hin1I | GRCGYC | 1 cut(s) | 255 |
| Hin1II | CATG | 4 cut(s) | 287, 373, 547, 689 |
| Hin6I | GCGC | 1 cut(s) | 376 |
| HinP1I | GCGC | 1 cut(s) | 376 |
| HinfI | GANTC | 3 cut(s) | 324, 588, 630 |
| Hpy188I | TCNGA | 6 cut(s) | 43, 73, 154, 406, 637, 814 |
| Hpy188III | TCNNGA | 5 cut(s) | 284, 427, 467, 602, 796 |
| HpyAV | CCTTC | 2 cut(s) | 38, 233 |
| HpyCH4III | ACNGT | 1 cut(s) | 249 |
| HpyCH4IV | ACGT | 5 cut(s) | 268, 388, 526, 561, 573 |
| HpyCH4V | TGCA | 2 cut(s) | 556, 729 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 92 |
| HpyF3I | CTNAG | 2 cut(s) | 40, 405 |
| HpySE526I | ACGT | 5 cut(s) | 268, 388, 526, 561, 573 |
| Hsp92I | GRCGYC | 1 cut(s) | 255 |
| Hsp92II | CATG | 4 cut(s) | 287, 373, 547, 689 |
| HspAI | GCGC | 1 cut(s) | 376 |
| Kzo9I | GATC | 4 cut(s) | 7, 199, 532, 792 |
| LmnI | GCTCC | 1 cut(s) | 815 |
| LpnPI | CCDG | 8 cut(s) | 33, 199, 427, 435, 669, 728, 741, 756 |
| Lsp1109I | GCAGC | 2 cut(s) | 733, 746 |
| MaeI | CTAG | 3 cut(s) | 204, 299, 807 |
| MaeII | ACGT | 5 cut(s) | 268, 388, 526, 561, 573 |
| MaeIII | GTNAC | 1 cut(s) | 26 |
| MalI | GATC | 4 cut(s) | 9, 201, 534, 794 |
| MboI | GATC | 4 cut(s) | 7, 199, 532, 792 |
| MboII | GAAGA | 3 cut(s) | 244, 672, 795 |
| MluCI | AATT | 4 cut(s) | 48, 394, 462, 475 |
| MlyI | GAGTC | 1 cut(s) | 582 |
| MmeI | TCCRAC | 3 cut(s) | 502, 660, 837 |
| MnlI | CCTC | 7 cut(s) | 402, 412, 463, 547, 660, 663, 769 |
| MseI | TTAA | 3 cut(s) | 176, 261, 380 |
| MspCI | CTTAAG | 1 cut(s) | 260 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 92 |
| NdeII | GATC | 4 cut(s) | 7, 199, 532, 792 |
| NlaIII | CATG | 4 cut(s) | 287, 373, 547, 689 |
| NmuCI | GTSAC | 1 cut(s) | 26 |
| NspI | RCATGY | 1 cut(s) | 373 |
| PaeR7I | CTCGAG | 1 cut(s) | 467 |
| PagI | TCATGA | 1 cut(s) | 283 |
| PciI | ACATGT | 1 cut(s) | 369 |
| PfeI | GAWTC | 2 cut(s) | 324, 630 |
| PkrI | GCNGC | 4 cut(s) | 723, 736, 751, 754 |
| PleI | GAGTC | 1 cut(s) | 582 |
| PmaCI | CACGTG | 1 cut(s) | 562 |
| PmlI | CACGTG | 1 cut(s) | 562 |
| PpsI | GAGTC | 1 cut(s) | 582 |
| Ppu21I | YACGTR | 1 cut(s) | 562 |
| PscI | ACATGT | 1 cut(s) | 369 |
| PspCI | CACGTG | 1 cut(s) | 562 |
| PspFI | CCCAGC | 1 cut(s) | 213 |
| PspPI | GGNCC | 2 cut(s) | 146, 444 |
| RsaI | GTAC | 2 cut(s) | 56, 221 |
| RsaNI | GTAC | 2 cut(s) | 55, 220 |
| SaqAI | TTAA | 3 cut(s) | 176, 261, 380 |
| SatI | GCNGC | 4 cut(s) | 722, 735, 750, 753 |
| Sau3AI | GATC | 4 cut(s) | 7, 199, 532, 792 |
| Sau96I | GGNCC | 2 cut(s) | 146, 444 |
| SchI | GAGTC | 1 cut(s) | 582 |
| SfcI | CTRYAG | 1 cut(s) | 744 |
| Sfr274I | CTCGAG | 1 cut(s) | 467 |
| SlaI | CTCGAG | 1 cut(s) | 467 |
| SmlI | CTYRAG | 4 cut(s) | 260, 427, 467, 773 |
| SmoI | CTYRAG | 4 cut(s) | 260, 427, 467, 773 |
| Sse9I | AATT | 4 cut(s) | 48, 394, 462, 475 |
| SsiI | CCGC | 4 cut(s) | 328, 732, 749, 752 |
| SspI | AATATT | 1 cut(s) | 280 |
| SspMI | CTAG | 3 cut(s) | 204, 299, 807 |
| TaaI | ACNGT | 1 cut(s) | 249 |
| TaiI | ACGT | 5 cut(s) | 271, 391, 529, 564, 576 |
| TaqI | TCGA | 3 cut(s) | 16, 468, 791 |
| TasI | AATT | 4 cut(s) | 48, 394, 462, 475 |
| TauI | GCSGC | 2 cut(s) | 752, 755 |
| TfiI | GAWTC | 2 cut(s) | 324, 630 |
| Tru1I | TTAA | 3 cut(s) | 176, 261, 380 |
| Tru9I | TTAA | 3 cut(s) | 176, 261, 380 |
| TscAI | CASTG | 5 cut(s) | 112, 254, 454, 722, 744 |
| TseFI | GTSAC | 1 cut(s) | 26 |
| TseI | GCWGC | 2 cut(s) | 721, 734 |
| Tsp45I | GTSAC | 1 cut(s) | 26 |
| TspDTI | ATGAA | 1 cut(s) | 272 |
| TspRI | CASTG | 5 cut(s) | 112, 254, 454, 722, 744 |
| Vha464I | CTTAAG | 1 cut(s) | 260 |
| XapI | RAATTY | 1 cut(s) | 462 |
| XceI | RCATGY | 1 cut(s) | 373 |
| XhoI | CTCGAG | 1 cut(s) | 467 |
| XspI | CTAG | 3 cut(s) | 204, 299, 807 |