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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 540 |
| AclWI | GGATC | 4 cut(s) | 2, 281, 470, 556 |
| AcuI | CTGAAG | 1 cut(s) | 296 |
| AfaI | GTAC | 4 cut(s) | 56, 308, 446, 686 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 64, 301 |
| AgsI | TTSAA | 3 cut(s) | 319, 470, 575 |
| AluBI | AGCT | 1 cut(s) | 395 |
| AluI | AGCT | 1 cut(s) | 395 |
| Alw26I | GTCTC | 1 cut(s) | 93 |
| AlwI | GGATC | 4 cut(s) | 2, 281, 470, 556 |
| AspS9I | GGNCC | 1 cut(s) | 146 |
| AsuHPI | GGTGA | 3 cut(s) | 172, 259, 475 |
| AvaII | GGWCC | 1 cut(s) | 146 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 38, 71 |
| BanI | GGYRCC | 1 cut(s) | 540 |
| BbsI | GAAGAC | 1 cut(s) | 326 |
| BccI | CCATC | 3 cut(s) | 66, 122, 137 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 530, 564 |
| BcoDI | GTCTC | 1 cut(s) | 93 |
| BfaI | CTAG | 4 cut(s) | 291, 392, 435, 650 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 92 |
| Bme18I | GGWCC | 1 cut(s) | 146 |
| BmgT120I | GGNCC | 1 cut(s) | 146 |
| BmiI | GGNNCC | 1 cut(s) | 542 |
| BmsI | GCATC | 2 cut(s) | 247, 331 |
| BpiI | GAAGAC | 1 cut(s) | 326 |
| BpuEI | CTTGAG | 1 cut(s) | 71 |
| BsaBI | GATNNNNATC | 1 cut(s) | 461 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 64, 301 |
| Bse3DI | GCAATG | 1 cut(s) | 670 |
| Bse8I | GATNNNNATC | 1 cut(s) | 461 |
| BseGI | GGATG | 1 cut(s) | 346 |
| BseJI | GATNNNNATC | 1 cut(s) | 461 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 64, 301 |
| BseMI | GCAATG | 1 cut(s) | 670 |
| BseMII | CTCAG | 3 cut(s) | 12, 54, 263 |
| BseYI | CCCAGC | 1 cut(s) | 300 |
| BshNI | GGYRCC | 1 cut(s) | 540 |
| BslFI | GGGAC | 1 cut(s) | 515 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 64, 301 |
| BsmAI | GTCTC | 1 cut(s) | 93 |
| BsmFI | GGGAC | 1 cut(s) | 515 |
| Bsp143I | GATC | 6 cut(s) | 7, 180, 286, 462, 529, 561 |
| BspCNI | CTCAG | 3 cut(s) | 13, 53, 264 |
| BspLI | GGNNCC | 1 cut(s) | 542 |
| BspPI | GGATC | 4 cut(s) | 2, 281, 470, 556 |
| BspT107I | GGYRCC | 1 cut(s) | 540 |
| BsrDI | GCAATG | 1 cut(s) | 670 |
| BssMI | GATC | 6 cut(s) | 7, 180, 286, 462, 529, 561 |
| Bst4CI | ACNGT | 2 cut(s) | 150, 444 |
| Bst6I | CTCTTC | 1 cut(s) | 600 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 672 |
| BstDEI | CTNAG | 3 cut(s) | 21, 40, 272 |
| BstF5I | GGATG | 1 cut(s) | 346 |
| BstKTI | GATC | 6 cut(s) | 10, 183, 289, 465, 532, 564 |
| BstMAI | GTCTC | 1 cut(s) | 93 |
| BstMBI | GATC | 6 cut(s) | 7, 180, 286, 462, 529, 561 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 92, 672 |
| BstV2I | GAAGAC | 1 cut(s) | 326 |
| BtsCI | GGATG | 1 cut(s) | 346 |
| BtsI | GCAGTG | 3 cut(s) | 105, 201, 631 |
| BtsIMutI | CAGTG | 5 cut(s) | 105, 201, 407, 504, 631 |
| Cfr13I | GGNCC | 1 cut(s) | 146 |
| Csp6I | GTAC | 4 cut(s) | 55, 307, 445, 685 |
| CviAII | CATG | 2 cut(s) | 527, 556 |
| CviJI | RGCY | 4 cut(s) | 5, 294, 395, 520 |
| CviKI_1 | RGCY | 4 cut(s) | 5, 294, 395, 520 |
| CviQI | GTAC | 4 cut(s) | 55, 307, 445, 685 |
| DdeI | CTNAG | 3 cut(s) | 21, 40, 272 |
| DpnI | GATC | 6 cut(s) | 9, 182, 288, 464, 531, 563 |
| DpnII | GATC | 6 cut(s) | 7, 180, 286, 462, 529, 561 |
| Eam1104I | CTCTTC | 1 cut(s) | 600 |
| EarI | CTCTTC | 1 cut(s) | 600 |
| Eco47I | GGWCC | 1 cut(s) | 146 |
| Eco57I | CTGAAG | 1 cut(s) | 296 |
| FaeI | CATG | 2 cut(s) | 530, 559 |
| FaiI | YATR | 8 cut(s) | 282, 425, 477, 514, 528, 538, 557, 713 |
| FaqI | GGGAC | 1 cut(s) | 515 |
| FatI | CATG | 2 cut(s) | 526, 555 |
| FokI | GGATG | 1 cut(s) | 353 |
| FspBI | CTAG | 4 cut(s) | 291, 392, 435, 650 |
| GsaI | CCCAGC | 1 cut(s) | 304 |
| Hin1II | CATG | 2 cut(s) | 530, 559 |
| HinfI | GANTC | 5 cut(s) | 38, 218, 411, 427, 470 |
| HphI | GGTGA | 3 cut(s) | 172, 259, 475 |
| Hpy166II | GTNNAC | 1 cut(s) | 440 |
| Hpy188I | TCNGA | 6 cut(s) | 43, 73, 154, 223, 273, 681 |
| Hpy188III | TCNNGA | 4 cut(s) | 371, 415, 551, 575 |
| Hpy8I | GTNNAC | 1 cut(s) | 440 |
| HpyAV | CCTTC | 2 cut(s) | 38, 320 |
| HpyCH4III | ACNGT | 2 cut(s) | 150, 444 |
| HpyCH4IV | ACGT | 1 cut(s) | 355 |
| HpyCH4V | TGCA | 3 cut(s) | 526, 636, 666 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 92, 672 |
| HpyF3I | CTNAG | 3 cut(s) | 21, 40, 272 |
| HpySE526I | ACGT | 1 cut(s) | 355 |
| Hsp92II | CATG | 2 cut(s) | 530, 559 |
| Kzo9I | GATC | 6 cut(s) | 7, 180, 286, 462, 529, 561 |
| LpnPI | CCDG | 6 cut(s) | 33, 286, 399, 428, 502, 701 |
| LweI | GCATC | 2 cut(s) | 247, 331 |
| MaeI | CTAG | 4 cut(s) | 291, 392, 435, 650 |
| MaeII | ACGT | 1 cut(s) | 355 |
| MaeIII | GTNAC | 2 cut(s) | 481, 551 |
| MalI | GATC | 6 cut(s) | 9, 182, 288, 464, 531, 563 |
| MboI | GATC | 6 cut(s) | 7, 180, 286, 462, 529, 561 |
| MboII | GAAGA | 3 cut(s) | 236, 331, 587 |
| MluCI | AATT | 2 cut(s) | 332, 708 |
| MlyI | GAGTC | 3 cut(s) | 32, 212, 436 |
| MmeI | TCCRAC | 1 cut(s) | 35 |
| MnlI | CCTC | 4 cut(s) | 267, 458, 710, 714 |
| MseI | TTAA | 3 cut(s) | 176, 263, 348 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 92, 672 |
| NdeII | GATC | 6 cut(s) | 7, 180, 286, 462, 529, 561 |
| NlaIII | CATG | 2 cut(s) | 530, 559 |
| NlaIV | GGNNCC | 1 cut(s) | 542 |
| NmuCI | GTSAC | 2 cut(s) | 481, 551 |
| PfeI | GAWTC | 2 cut(s) | 411, 470 |
| PleI | GAGTC | 3 cut(s) | 32, 212, 435 |
| PpsI | GAGTC | 3 cut(s) | 32, 212, 435 |
| PspFI | CCCAGC | 1 cut(s) | 300 |
| PspN4I | GGNNCC | 1 cut(s) | 542 |
| PspPI | GGNCC | 1 cut(s) | 146 |
| RsaI | GTAC | 4 cut(s) | 56, 308, 446, 686 |
| RsaNI | GTAC | 4 cut(s) | 55, 307, 445, 685 |
| SaqAI | TTAA | 3 cut(s) | 176, 263, 348 |
| Sau3AI | GATC | 6 cut(s) | 7, 180, 286, 462, 529, 561 |
| Sau96I | GGNCC | 1 cut(s) | 146 |
| SchI | GAGTC | 3 cut(s) | 32, 212, 436 |
| SetI | ASST | 9 cut(s) | 22, 162, 249, 312, 358, 397, 450, 642, 702 |
| SfaNI | GCATC | 2 cut(s) | 247, 331 |
| SinI | GGWCC | 1 cut(s) | 146 |
| SmlI | CTYRAG | 1 cut(s) | 50 |
| SmoI | CTYRAG | 1 cut(s) | 50 |
| Sse9I | AATT | 2 cut(s) | 332, 708 |
| SspMI | CTAG | 4 cut(s) | 291, 392, 435, 650 |
| TaaI | ACNGT | 2 cut(s) | 150, 444 |
| TaiI | ACGT | 1 cut(s) | 358 |
| TaqI | TCGA | 2 cut(s) | 16, 602 |
| TasI | AATT | 2 cut(s) | 332, 708 |
| TfiI | GAWTC | 2 cut(s) | 411, 470 |
| Tru1I | TTAA | 3 cut(s) | 176, 263, 348 |
| Tru9I | TTAA | 3 cut(s) | 176, 263, 348 |
| TscAI | CASTG | 5 cut(s) | 112, 208, 407, 511, 638 |
| TseFI | GTSAC | 2 cut(s) | 481, 551 |
| Tsp45I | GTSAC | 2 cut(s) | 481, 551 |
| TspDTI | ATGAA | 2 cut(s) | 246, 507 |
| TspGWI | ACGGA | 2 cut(s) | 554, 601 |
| TspRI | CASTG | 5 cut(s) | 112, 208, 407, 511, 638 |
| VpaK11BI | GGWCC | 1 cut(s) | 146 |
| XspI | CTAG | 4 cut(s) | 291, 392, 435, 650 |