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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 257 |
| AciI | CCGC | 2 cut(s) | 255, 374 |
| AclWI | GGATC | 1 cut(s) | 605 |
| AcoI | YGGCCR | 1 cut(s) | 717 |
| AcsI | RAATTY | 1 cut(s) | 1020 |
| AcuI | CTGAAG | 1 cut(s) | 855 |
| AfaI | GTAC | 2 cut(s) | 339, 632 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 484, 715, 726 |
| AflII | CTTAAG | 1 cut(s) | 671 |
| AflIII | ACRYGT | 2 cut(s) | 298, 780 |
| AgsI | TTSAA | 5 cut(s) | 643, 772, 845, 934, 988 |
| AjiI | CACGTC | 1 cut(s) | 299 |
| AjnI | CCWGG | 1 cut(s) | 998 |
| AleI | CACNNNNGTG | 1 cut(s) | 297 |
| AluBI | AGCT | 4 cut(s) | 269, 326, 442, 940 |
| AluI | AGCT | 4 cut(s) | 269, 326, 442, 940 |
| Alw21I | GWGCWC | 2 cut(s) | 9, 444 |
| Alw44I | GTGCAC | 1 cut(s) | 5 |
| AlwI | GGATC | 1 cut(s) | 605 |
| Ama87I | CYCGRG | 1 cut(s) | 1025 |
| AoxI | GGCC | 2 cut(s) | 717, 1001 |
| ApaLI | GTGCAC | 1 cut(s) | 5 |
| ApoI | RAATTY | 1 cut(s) | 1020 |
| AspLEI | GCGC | 1 cut(s) | 259 |
| AspS9I | GGNCC | 1 cut(s) | 1002 |
| AsuC2I | CCSGG | 1 cut(s) | 11 |
| AsuHPI | GGTGA | 1 cut(s) | 583 |
| AvaI | CYCGRG | 1 cut(s) | 1025 |
| BaeGI | GKGCMC | 1 cut(s) | 9 |
| BanII | GRGCYC | 1 cut(s) | 444 |
| BbsI | GAAGAC | 1 cut(s) | 650 |
| Bbv12I | GWGCWC | 2 cut(s) | 9, 444 |
| BccI | CCATC | 3 cut(s) | 278, 486, 568 |
| BceAI | ACGGC | 1 cut(s) | 704 |
| BciT130I | CCWGG | 1 cut(s) | 1000 |
| BclI | TGATCA | 2 cut(s) | 151, 942 |
| BcnI | CCSGG | 1 cut(s) | 11 |
| BfaI | CTAG | 3 cut(s) | 354, 615, 884 |
| BfrI | CTTAAG | 1 cut(s) | 671 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 512 |
| BisI | GCNGC | 2 cut(s) | 255, 374 |
| BlsI | GCNGC | 2 cut(s) | 256, 375 |
| Bme1390I | CCNGG | 2 cut(s) | 11, 1000 |
| BmeT110I | CYCGRG | 1 cut(s) | 1025 |
| BmgBI | CACGTC | 1 cut(s) | 299 |
| BmgT120I | GGNCC | 1 cut(s) | 1002 |
| BmrFI | CCNGG | 2 cut(s) | 11, 1000 |
| BmrI | ACTGGG | 1 cut(s) | 1017 |
| BmsI | GCATC | 2 cut(s) | 360, 655 |
| BmuI | ACTGGG | 1 cut(s) | 1017 |
| BpiI | GAAGAC | 1 cut(s) | 650 |
| BpuMI | CCSGG | 1 cut(s) | 11 |
| BsaBI | GATNNNNATC | 2 cut(s) | 57, 138 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 484, 715, 726 |
| Bse118I | RCCGGY | 3 cut(s) | 38, 170, 203 |
| Bse1I | ACTGG | 3 cut(s) | 720, 892, 1012 |
| Bse8I | GATNNNNATC | 2 cut(s) | 57, 138 |
| BseBI | CCWGG | 1 cut(s) | 1000 |
| BseGI | GGATG | 6 cut(s) | 61, 91, 142, 175, 340, 670 |
| BseJI | GATNNNNATC | 2 cut(s) | 57, 138 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 484, 715, 726 |
| BseNI | ACTGG | 3 cut(s) | 720, 892, 1012 |
| BseRI | GAGGAG | 1 cut(s) | 372 |
| BseSI | GKGCMC | 1 cut(s) | 9 |
| BseYI | CCCAGC | 1 cut(s) | 624 |
| Bsh1236I | CGCG | 1 cut(s) | 257 |
| BshFI | GGCC | 2 cut(s) | 719, 1003 |
| BsiHKAI | GWGCWC | 2 cut(s) | 9, 444 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1025 |
| BsiSI | CCGG | 4 cut(s) | 10, 39, 171, 204 |
| BslFI | GGGAC | 3 cut(s) | 258, 690, 1024 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 484, 715, 726 |
| BsmFI | GGGAC | 3 cut(s) | 258, 690, 1024 |
| BsnI | GGCC | 2 cut(s) | 719, 1003 |
| BsoBI | CYCGRG | 1 cut(s) | 1025 |
| Bsp1286I | GDGCHC | 2 cut(s) | 9, 444 |
| Bsp1407I | TGTACA | 1 cut(s) | 337 |
| Bsp143I | GATC | 6 cut(s) | 58, 88, 139, 151, 610, 942 |
| BspACI | CCGC | 2 cut(s) | 255, 374 |
| BspANI | GGCC | 2 cut(s) | 719, 1003 |
| BspFNI | CGCG | 1 cut(s) | 257 |
| BspHI | TCATGA | 1 cut(s) | 694 |
| BspPI | GGATC | 1 cut(s) | 605 |
| BspTI | CTTAAG | 1 cut(s) | 671 |
| BsrFI | RCCGGY | 3 cut(s) | 38, 170, 203 |
| BsrGI | TGTACA | 1 cut(s) | 337 |
| BsrI | ACTGG | 3 cut(s) | 720, 892, 1012 |
| BssAI | RCCGGY | 3 cut(s) | 38, 170, 203 |
| BssMI | GATC | 6 cut(s) | 58, 88, 139, 151, 610, 942 |
| Bst2UI | CCWGG | 1 cut(s) | 1000 |
| Bst4CI | ACNGT | 1 cut(s) | 660 |
| BstAFI | CTTAAG | 1 cut(s) | 671 |
| BstAUI | TGTACA | 1 cut(s) | 337 |
| BstC8I | GCNNGC | 1 cut(s) | 391 |
| BstDEI | CTNAG | 2 cut(s) | 596, 963 |
| BstEII | GGTNACC | 1 cut(s) | 287 |
| BstF5I | GGATG | 6 cut(s) | 61, 91, 142, 175, 340, 670 |
| BstFNI | CGCG | 1 cut(s) | 257 |
| BstHHI | GCGC | 1 cut(s) | 259 |
| BstKTI | GATC | 6 cut(s) | 61, 91, 142, 154, 613, 945 |
| BstMBI | GATC | 6 cut(s) | 58, 88, 139, 151, 610, 942 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 323, 512 |
| BstNI | CCWGG | 1 cut(s) | 1000 |
| BstNSI | RCATGY | 2 cut(s) | 393, 784 |
| BstPI | GGTNACC | 1 cut(s) | 287 |
| BstSCI | CCNGG | 2 cut(s) | 9, 998 |
| BstSLI | GKGCMC | 1 cut(s) | 9 |
| BstUI | CGCG | 1 cut(s) | 257 |
| BstV2I | GAAGAC | 1 cut(s) | 650 |
| BsuRI | GGCC | 2 cut(s) | 719, 1003 |
| BtrI | CACGTC | 1 cut(s) | 299 |
| BtsCI | GGATG | 6 cut(s) | 61, 91, 142, 175, 340, 670 |
| BtsI | GCAGTG | 1 cut(s) | 525 |
| BtsIMutI | CAGTG | 3 cut(s) | 525, 731, 1005 |
| Cac8I | GCNNGC | 1 cut(s) | 391 |
| CciI | TCATGA | 1 cut(s) | 694 |
| CfoI | GCGC | 1 cut(s) | 259 |
| Cfr10I | RCCGGY | 3 cut(s) | 38, 170, 203 |
| Cfr13I | GGNCC | 1 cut(s) | 1002 |
| Csp6I | GTAC | 2 cut(s) | 338, 631 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 793, 828 |
| CviAII | CATG | 3 cut(s) | 390, 695, 781 |
| CviQI | GTAC | 2 cut(s) | 338, 631 |
| DdeI | CTNAG | 2 cut(s) | 596, 963 |
| DpnI | GATC | 6 cut(s) | 60, 90, 141, 153, 612, 944 |
| DpnII | GATC | 6 cut(s) | 58, 88, 139, 151, 610, 942 |
| EaeI | YGGCCR | 1 cut(s) | 717 |
| Ecl136II | GAGCTC | 1 cut(s) | 442 |
| Eco24I | GRGCYC | 1 cut(s) | 444 |
| Eco32I | GATATC | 4 cut(s) | 34, 115, 166, 199 |
| Eco53kI | GAGCTC | 1 cut(s) | 442 |
| Eco57I | CTGAAG | 1 cut(s) | 855 |
| Eco88I | CYCGRG | 1 cut(s) | 1025 |
| Eco91I | GGTNACC | 1 cut(s) | 287 |
| EcoICRI | GAGCTC | 1 cut(s) | 442 |
| EcoO65I | GGTNACC | 1 cut(s) | 287 |
| EcoRII | CCWGG | 1 cut(s) | 998 |
| EcoRV | GATATC | 4 cut(s) | 34, 115, 166, 199 |
| EcoT38I | GRGCYC | 1 cut(s) | 444 |
| FaeI | CATG | 3 cut(s) | 393, 698, 784 |
| FaqI | GGGAC | 3 cut(s) | 258, 690, 1024 |
| FatI | CATG | 3 cut(s) | 389, 694, 780 |
| FbaI | TGATCA | 2 cut(s) | 151, 942 |
| Fnu4HI | GCNGC | 2 cut(s) | 255, 374 |
| FokI | GGATG | 6 cut(s) | 48, 78, 129, 162, 327, 677 |
| FriOI | GRGCYC | 1 cut(s) | 444 |
| Fsp4HI | GCNGC | 2 cut(s) | 255, 374 |
| FspBI | CTAG | 3 cut(s) | 354, 615, 884 |
| GlaI | GCGC | 1 cut(s) | 258 |
| GluI | GCNGC | 2 cut(s) | 255, 374 |
| GsaI | CCCAGC | 1 cut(s) | 628 |
| HaeIII | GGCC | 2 cut(s) | 719, 1003 |
| HapII | CCGG | 4 cut(s) | 10, 39, 171, 204 |
| HhaI | GCGC | 1 cut(s) | 259 |
| Hin1II | CATG | 3 cut(s) | 393, 698, 784 |
| Hin6I | GCGC | 1 cut(s) | 257 |
| HinP1I | GCGC | 1 cut(s) | 257 |
| HinfI | GANTC | 4 cut(s) | 735, 850, 921, 967 |
| HpaII | CCGG | 4 cut(s) | 10, 39, 171, 204 |
| HphI | GGTGA | 1 cut(s) | 583 |
| Hpy166II | GTNNAC | 1 cut(s) | 7 |
| Hpy188I | TCNGA | 2 cut(s) | 401, 493 |
| Hpy188III | TCNNGA | 4 cut(s) | 455, 695, 985, 1025 |
| Hpy8I | GTNNAC | 1 cut(s) | 7 |
| Hpy99I | CGWCG | 2 cut(s) | 122, 440 |
| HpyAV | CCTTC | 3 cut(s) | 452, 458, 810 |
| HpyCH4III | ACNGT | 1 cut(s) | 660 |
| HpyCH4IV | ACGT | 2 cut(s) | 298, 679 |
| HpyCH4V | TGCA | 3 cut(s) | 7, 17, 389 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 323, 512 |
| HpyF3I | CTNAG | 2 cut(s) | 596, 963 |
| HpySE526I | ACGT | 2 cut(s) | 298, 679 |
| Hsp92II | CATG | 3 cut(s) | 393, 698, 784 |
| HspAI | GCGC | 1 cut(s) | 257 |
| Ksp22I | TGATCA | 2 cut(s) | 151, 942 |
| Kzo9I | GATC | 6 cut(s) | 58, 88, 139, 151, 610, 942 |
| LmnI | GCTCC | 1 cut(s) | 711 |
| LweI | GCATC | 2 cut(s) | 360, 655 |
| MaeI | CTAG | 3 cut(s) | 354, 615, 884 |
| MaeII | ACGT | 2 cut(s) | 298, 679 |
| MaeIII | GTNAC | 1 cut(s) | 287 |
| MalI | GATC | 6 cut(s) | 60, 90, 141, 153, 612, 944 |
| MboI | GATC | 6 cut(s) | 58, 88, 139, 151, 610, 942 |
| MboII | GAAGA | 3 cut(s) | 375, 655, 842 |
| MhlI | GDGCHC | 2 cut(s) | 9, 444 |
| MluCI | AATT | 3 cut(s) | 805, 1020, 1033 |
| MlyI | GAGTC | 2 cut(s) | 844, 976 |
| MmeI | TCCRAC | 3 cut(s) | 119, 203, 254 |
| MnlI | CCTC | 6 cut(s) | 307, 350, 353, 424, 970, 1021 |
| MseI | TTAA | 5 cut(s) | 471, 587, 672, 791, 1036 |
| MslI | CAYNNNNRTG | 1 cut(s) | 297 |
| MspCI | CTTAAG | 1 cut(s) | 671 |
| MspI | CCGG | 4 cut(s) | 10, 39, 171, 204 |
| MspR9I | CCNGG | 2 cut(s) | 11, 1000 |
| MvaI | CCWGG | 1 cut(s) | 1000 |
| MvnI | CGCG | 1 cut(s) | 257 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 323, 512 |
| NciI | CCSGG | 1 cut(s) | 11 |
| NdeII | GATC | 6 cut(s) | 58, 88, 139, 151, 610, 942 |
| NlaIII | CATG | 3 cut(s) | 393, 698, 784 |
| NspI | RCATGY | 2 cut(s) | 393, 784 |
| OliI | CACNNNNGTG | 1 cut(s) | 297 |
| PaeI | GCATGC | 1 cut(s) | 393 |
| PaeR7I | CTCGAG | 1 cut(s) | 1025 |
| PagI | TCATGA | 1 cut(s) | 694 |
| PciI | ACATGT | 1 cut(s) | 780 |
| PfeI | GAWTC | 2 cut(s) | 735, 921 |
| PkrI | GCNGC | 2 cut(s) | 256, 375 |
| PleI | GAGTC | 2 cut(s) | 844, 975 |
| PpsI | GAGTC | 2 cut(s) | 844, 975 |
| PscI | ACATGT | 1 cut(s) | 780 |
| Psp124BI | GAGCTC | 1 cut(s) | 444 |
| Psp6I | CCWGG | 1 cut(s) | 998 |
| PspEI | GGTNACC | 1 cut(s) | 287 |
| PspFI | CCCAGC | 1 cut(s) | 624 |
| PspGI | CCWGG | 1 cut(s) | 998 |
| PspPI | GGNCC | 1 cut(s) | 1002 |
| RsaI | GTAC | 2 cut(s) | 339, 632 |
| RsaNI | GTAC | 2 cut(s) | 338, 631 |
| RseI | CAYNNNNRTG | 1 cut(s) | 297 |
| SacI | GAGCTC | 1 cut(s) | 444 |
| SaqAI | TTAA | 5 cut(s) | 471, 587, 672, 791, 1036 |
| SatI | GCNGC | 2 cut(s) | 255, 374 |
| Sau3AI | GATC | 6 cut(s) | 58, 88, 139, 151, 610, 942 |
| Sau96I | GGNCC | 1 cut(s) | 1002 |
| SchI | GAGTC | 2 cut(s) | 844, 976 |
| ScrFI | CCNGG | 2 cut(s) | 11, 1000 |
| SduI | GDGCHC | 2 cut(s) | 9, 444 |
| SetI | ASST | 8 cut(s) | 271, 301, 328, 444, 573, 682, 942, 981 |
| SfaNI | GCATC | 2 cut(s) | 360, 655 |
| Sfr274I | CTCGAG | 1 cut(s) | 1025 |
| SlaI | CTCGAG | 1 cut(s) | 1025 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 297 |
| SmlI | CTYRAG | 2 cut(s) | 671, 1025 |
| SmoI | CTYRAG | 2 cut(s) | 671, 1025 |
| SphI | GCATGC | 1 cut(s) | 393 |
| Sse9I | AATT | 3 cut(s) | 805, 1020, 1033 |
| SsiI | CCGC | 2 cut(s) | 255, 374 |
| SspMI | CTAG | 3 cut(s) | 354, 615, 884 |
| SstI | GAGCTC | 1 cut(s) | 444 |
| StyD4I | CCNGG | 2 cut(s) | 9, 998 |
| TaaI | ACNGT | 1 cut(s) | 660 |
| TaiI | ACGT | 2 cut(s) | 301, 682 |
| TaqI | TCGA | 3 cut(s) | 282, 435, 1026 |
| TaqII | GACCGA | 1 cut(s) | 110 |
| TasI | AATT | 3 cut(s) | 805, 1020, 1033 |
| TatI | WGTACW | 2 cut(s) | 337, 630 |
| TauI | GCSGC | 2 cut(s) | 257, 376 |
| TfiI | GAWTC | 2 cut(s) | 735, 921 |
| Tru1I | TTAA | 5 cut(s) | 471, 587, 672, 791, 1036 |
| Tru9I | TTAA | 5 cut(s) | 471, 587, 672, 791, 1036 |
| TscAI | CASTG | 3 cut(s) | 532, 731, 1012 |
| TspDTI | ATGAA | 2 cut(s) | 570, 683 |
| TspRI | CASTG | 3 cut(s) | 532, 731, 1012 |
| Vha464I | CTTAAG | 1 cut(s) | 671 |
| VneI | GTGCAC | 1 cut(s) | 5 |
| XapI | RAATTY | 1 cut(s) | 1020 |
| XceI | RCATGY | 2 cut(s) | 393, 784 |
| XhoI | CTCGAG | 1 cut(s) | 1025 |
| XspI | CTAG | 3 cut(s) | 354, 615, 884 |