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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 372 |
| AasI | GACNNNNNNGTC | 2 cut(s) | 756, 1043 |
| AciI | CCGC | 1 cut(s) | 358 |
| AclWI | GGATC | 4 cut(s) | 454, 704, 863, 876 |
| AcsI | RAATTY | 2 cut(s) | 53, 639 |
| AcuI | CTGAAG | 1 cut(s) | 239 |
| AcvI | CACGTG | 2 cut(s) | 722, 740 |
| AdeI | CACNNNGTG | 1 cut(s) | 740 |
| AfaI | GTAC | 3 cut(s) | 86, 823, 938 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 94, 244, 345, 978 |
| AflIII | ACRYGT | 2 cut(s) | 703, 775 |
| AgsI | TTSAA | 6 cut(s) | 14, 22, 42, 262, 391, 553 |
| AjiI | CACGTC | 2 cut(s) | 419, 704 |
| AjnI | CCWGG | 2 cut(s) | 617, 1069 |
| AleI | CACNNNNGTG | 1 cut(s) | 119 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 324, 356 |
| AluBI | AGCT | 3 cut(s) | 277, 559, 860 |
| AluI | AGCT | 3 cut(s) | 277, 559, 860 |
| Alw26I | GTCTC | 1 cut(s) | 425 |
| AlwI | GGATC | 4 cut(s) | 454, 704, 863, 876 |
| AoxI | GGCC | 4 cut(s) | 620, 766, 802, 1030 |
| ApeKI | GCWGC | 1 cut(s) | 403 |
| ApoI | RAATTY | 2 cut(s) | 53, 639 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 252 |
| AspLEI | GCGC | 1 cut(s) | 408 |
| AspS9I | GGNCC | 7 cut(s) | 160, 176, 767, 803, 827, 1031, 1081 |
| AsuHPI | GGTGA | 3 cut(s) | 202, 676, 683 |
| AvaII | GGWCC | 4 cut(s) | 160, 176, 827, 1081 |
| AxyI | CCTNAGG | 1 cut(s) | 864 |
| BamHI | GGATCC | 1 cut(s) | 868 |
| BauI | CACGAG | 1 cut(s) | 602 |
| BbrPI | CACGTG | 2 cut(s) | 722, 740 |
| BbsI | GAAGAC | 1 cut(s) | 269 |
| BbvI | GCAGC | 1 cut(s) | 390 |
| BccI | CCATC | 3 cut(s) | 25, 152, 785 |
| BciT130I | CCWGG | 2 cut(s) | 619, 1071 |
| BclI | TGATCA | 1 cut(s) | 561 |
| BcoDI | GTCTC | 1 cut(s) | 425 |
| BfaI | CTAG | 1 cut(s) | 503 |
| BfmI | CTRYAG | 2 cut(s) | 910, 976 |
| BisI | GCNGC | 1 cut(s) | 404 |
| BlsI | GCNGC | 1 cut(s) | 405 |
| Bme1390I | CCNGG | 2 cut(s) | 619, 1071 |
| Bme18I | GGWCC | 4 cut(s) | 160, 176, 827, 1081 |
| BmgBI | CACGTC | 2 cut(s) | 419, 704 |
| BmgT120I | GGNCC | 7 cut(s) | 160, 176, 767, 803, 827, 1031, 1081 |
| BmiI | GGNNCC | 4 cut(s) | 162, 829, 844, 870 |
| BmrFI | CCNGG | 2 cut(s) | 619, 1071 |
| BmrI | ACTGGG | 1 cut(s) | 825 |
| BmsI | GCATC | 1 cut(s) | 274 |
| BmuI | ACTGGG | 1 cut(s) | 825 |
| BpiI | GAAGAC | 1 cut(s) | 269 |
| BsaAI | YACGTR | 2 cut(s) | 722, 740 |
| BsaJI | CCNNGG | 3 cut(s) | 156, 270, 846 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 94, 244, 345, 978 |
| Bse1I | ACTGG | 4 cut(s) | 511, 829, 831, 931 |
| Bse21I | CCTNAGG | 1 cut(s) | 864 |
| BseBI | CCWGG | 2 cut(s) | 619, 1071 |
| BseDI | CCNNGG | 3 cut(s) | 156, 270, 846 |
| BseGI | GGATG | 2 cut(s) | 289, 1027 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 94, 244, 345, 978 |
| BseMII | CTCAG | 3 cut(s) | 84, 1025, 1103 |
| BseNI | ACTGG | 4 cut(s) | 511, 829, 831, 931 |
| BseXI | GCAGC | 1 cut(s) | 390 |
| BseYI | CCCAGC | 1 cut(s) | 233 |
| BsgI | GTGCAG | 1 cut(s) | 872 |
| BshFI | GGCC | 4 cut(s) | 622, 768, 804, 1032 |
| BslFI | GGGAC | 3 cut(s) | 643, 762, 813 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 94, 244, 345, 978 |
| BsmAI | GTCTC | 1 cut(s) | 425 |
| BsmBI | CGTCTC | 1 cut(s) | 425 |
| BsmFI | GGGAC | 3 cut(s) | 643, 762, 813 |
| BsnI | GGCC | 4 cut(s) | 622, 768, 804, 1032 |
| Bsp143I | GATC | 4 cut(s) | 459, 561, 709, 868 |
| Bsp19I | CCATGG | 1 cut(s) | 270 |
| BspACI | CCGC | 1 cut(s) | 358 |
| BspANI | GGCC | 4 cut(s) | 622, 768, 804, 1032 |
| BspCNI | CTCAG | 3 cut(s) | 83, 1024, 1102 |
| BspHI | TCATGA | 1 cut(s) | 313 |
| BspLI | GGNNCC | 4 cut(s) | 162, 829, 844, 870 |
| BspPI | GGATC | 4 cut(s) | 454, 704, 863, 876 |
| BsrI | ACTGG | 4 cut(s) | 511, 829, 831, 931 |
| BssECI | CCNNGG | 3 cut(s) | 156, 270, 846 |
| BssMI | GATC | 4 cut(s) | 459, 561, 709, 868 |
| BssSI | CACGAG | 1 cut(s) | 602 |
| BssT1I | CCWWGG | 2 cut(s) | 270, 846 |
| Bst2BI | CACGAG | 1 cut(s) | 602 |
| Bst2UI | CCWGG | 2 cut(s) | 619, 1071 |
| Bst4CI | ACNGT | 3 cut(s) | 92, 180, 340 |
| BstBAI | YACGTR | 2 cut(s) | 722, 740 |
| BstC8I | GCNNGC | 3 cut(s) | 239, 362, 802 |
| BstDEI | CTNAG | 5 cut(s) | 70, 864, 961, 1011, 1089 |
| BstDSI | CCRYGG | 2 cut(s) | 156, 270 |
| BstF5I | GGATG | 2 cut(s) | 289, 1027 |
| BstHHI | GCGC | 1 cut(s) | 408 |
| BstKTI | GATC | 4 cut(s) | 462, 564, 712, 871 |
| BstMAI | GTCTC | 1 cut(s) | 425 |
| BstMBI | GATC | 4 cut(s) | 459, 561, 709, 868 |
| BstNI | CCWGG | 2 cut(s) | 619, 1071 |
| BstNSI | RCATGY | 2 cut(s) | 403, 779 |
| BstSCI | CCNGG | 2 cut(s) | 617, 1069 |
| BstSFI | CTRYAG | 2 cut(s) | 910, 976 |
| BstV1I | GCAGC | 1 cut(s) | 390 |
| BstV2I | GAAGAC | 1 cut(s) | 269 |
| BstX2I | RGATCY | 1 cut(s) | 868 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 121, 780 |
| BstYI | RGATCY | 1 cut(s) | 868 |
| Bsu36I | CCTNAGG | 1 cut(s) | 864 |
| BsuRI | GGCC | 4 cut(s) | 622, 768, 804, 1032 |
| BtgI | CCRYGG | 2 cut(s) | 156, 270 |
| BtrI | CACGTC | 2 cut(s) | 419, 704 |
| BtsCI | GGATG | 2 cut(s) | 289, 1027 |
| BtsIMutI | CAGTG | 2 cut(s) | 88, 838 |
| Cac8I | GCNNGC | 3 cut(s) | 239, 362, 802 |
| CciI | TCATGA | 1 cut(s) | 313 |
| CfoI | GCGC | 1 cut(s) | 408 |
| Cfr13I | GGNCC | 7 cut(s) | 160, 176, 767, 803, 827, 1031, 1081 |
| CseI | GACGC | 1 cut(s) | 179 |
| Csp6I | GTAC | 3 cut(s) | 85, 822, 937 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 412, 447 |
| CviAII | CATG | 7 cut(s) | 271, 314, 400, 752, 776, 815, 839 |
| CviQI | GTAC | 3 cut(s) | 85, 822, 937 |
| DdeI | CTNAG | 5 cut(s) | 70, 864, 961, 1011, 1089 |
| DpnI | GATC | 4 cut(s) | 461, 563, 711, 870 |
| DpnII | GATC | 4 cut(s) | 459, 561, 709, 868 |
| DraIII | CACNNNGTG | 1 cut(s) | 740 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 756, 1043 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 756, 1043 |
| Eco130I | CCWWGG | 2 cut(s) | 270, 846 |
| Eco147I | AGGCCT | 1 cut(s) | 622 |
| Eco47I | GGWCC | 4 cut(s) | 160, 176, 827, 1081 |
| Eco57I | CTGAAG | 1 cut(s) | 239 |
| Eco72I | CACGTG | 2 cut(s) | 722, 740 |
| Eco81I | CCTNAGG | 1 cut(s) | 864 |
| EcoO109I | RGGNCCY | 3 cut(s) | 767, 1031, 1081 |
| EcoRII | CCWGG | 2 cut(s) | 617, 1069 |
| EcoT14I | CCWWGG | 2 cut(s) | 270, 846 |
| ErhI | CCWWGG | 2 cut(s) | 270, 846 |
| Esp3I | CGTCTC | 1 cut(s) | 425 |
| FaeI | CATG | 7 cut(s) | 274, 317, 403, 755, 779, 818, 842 |
| FaqI | GGGAC | 3 cut(s) | 643, 762, 813 |
| FatI | CATG | 7 cut(s) | 270, 313, 399, 751, 775, 814, 838 |
| FbaI | TGATCA | 1 cut(s) | 561 |
| Fnu4HI | GCNGC | 1 cut(s) | 404 |
| FokI | GGATG | 2 cut(s) | 296, 1034 |
| Fsp4HI | GCNGC | 1 cut(s) | 404 |
| FspBI | CTAG | 1 cut(s) | 503 |
| GlaI | GCGC | 1 cut(s) | 407 |
| GluI | GCNGC | 1 cut(s) | 404 |
| GsaI | CCCAGC | 1 cut(s) | 237 |
| HaeIII | GGCC | 4 cut(s) | 622, 768, 804, 1032 |
| HgaI | GACGC | 1 cut(s) | 179 |
| HhaI | GCGC | 1 cut(s) | 408 |
| Hin1II | CATG | 7 cut(s) | 274, 317, 403, 755, 779, 818, 842 |
| Hin6I | GCGC | 1 cut(s) | 406 |
| HinP1I | GCGC | 1 cut(s) | 406 |
| HincII | GTYRAC | 1 cut(s) | 1048 |
| HindII | GTYRAC | 1 cut(s) | 1048 |
| HinfI | GANTC | 4 cut(s) | 38, 68, 540, 992 |
| HphI | GGTGA | 3 cut(s) | 202, 676, 683 |
| Hpy166II | GTNNAC | 2 cut(s) | 607, 1048 |
| Hpy188I | TCNGA | 3 cut(s) | 73, 103, 184 |
| Hpy188III | TCNNGA | 4 cut(s) | 314, 604, 644, 1106 |
| Hpy8I | GTNNAC | 2 cut(s) | 607, 1048 |
| HpyAV | CCTTC | 3 cut(s) | 68, 263, 1019 |
| HpyCH4III | ACNGT | 3 cut(s) | 92, 180, 340 |
| HpyCH4IV | ACGT | 5 cut(s) | 418, 703, 721, 739, 1101 |
| HpyCH4V | TGCA | 4 cut(s) | 574, 734, 853, 1061 |
| HpyF3I | CTNAG | 5 cut(s) | 70, 864, 961, 1011, 1089 |
| HpySE526I | ACGT | 5 cut(s) | 418, 703, 721, 739, 1101 |
| Hsp92II | CATG | 7 cut(s) | 274, 317, 403, 755, 779, 818, 842 |
| HspAI | GCGC | 1 cut(s) | 406 |
| Ksp22I | TGATCA | 1 cut(s) | 561 |
| Kzo9I | GATC | 4 cut(s) | 459, 561, 709, 868 |
| LmnI | GCTCC | 5 cut(s) | 274, 330, 848, 865, 1000 |
| Lsp1109I | GCAGC | 1 cut(s) | 390 |
| LweI | GCATC | 1 cut(s) | 274 |
| MaeI | CTAG | 1 cut(s) | 503 |
| MaeII | ACGT | 5 cut(s) | 418, 703, 721, 739, 1101 |
| MaeIII | GTNAC | 1 cut(s) | 1073 |
| MalI | GATC | 4 cut(s) | 461, 563, 711, 870 |
| MboI | GATC | 4 cut(s) | 459, 561, 709, 868 |
| MboII | GAAGA | 2 cut(s) | 274, 461 |
| MfeI | CAATTG | 1 cut(s) | 1056 |
| MflI | RGATCY | 1 cut(s) | 868 |
| MluCI | AATT | 5 cut(s) | 24, 53, 78, 639, 1056 |
| MlyI | GAGTC | 2 cut(s) | 62, 1001 |
| MmeI | TCCRAC | 2 cut(s) | 501, 679 |
| MroXI | GAANNNNTTC | 1 cut(s) | 252 |
| MseI | TTAA | 1 cut(s) | 410 |
| MslI | CAYNNNNRTG | 2 cut(s) | 119, 778 |
| MspR9I | CCNGG | 2 cut(s) | 619, 1071 |
| MunI | CAATTG | 1 cut(s) | 1056 |
| MvaI | CCWGG | 2 cut(s) | 619, 1071 |
| NcoI | CCATGG | 1 cut(s) | 270 |
| NdeII | GATC | 4 cut(s) | 459, 561, 709, 868 |
| NlaIII | CATG | 7 cut(s) | 274, 317, 403, 755, 779, 818, 842 |
| NlaIV | GGNNCC | 4 cut(s) | 162, 829, 844, 870 |
| NspI | RCATGY | 2 cut(s) | 403, 779 |
| OliI | CACNNNNGTG | 1 cut(s) | 119 |
| PagI | TCATGA | 1 cut(s) | 313 |
| PceI | AGGCCT | 1 cut(s) | 622 |
| PciI | ACATGT | 1 cut(s) | 775 |
| PdmI | GAANNNNTTC | 1 cut(s) | 252 |
| PfeI | GAWTC | 2 cut(s) | 38, 540 |
| PkrI | GCNGC | 1 cut(s) | 405 |
| PleI | GAGTC | 2 cut(s) | 62, 1000 |
| PmaCI | CACGTG | 2 cut(s) | 722, 740 |
| PmlI | CACGTG | 2 cut(s) | 722, 740 |
| PpsI | GAGTC | 2 cut(s) | 62, 1000 |
| Ppu21I | YACGTR | 2 cut(s) | 722, 740 |
| PpuMI | RGGWCCY | 1 cut(s) | 1081 |
| PscI | ACATGT | 1 cut(s) | 775 |
| PsiI | TTATAA | 1 cut(s) | 372 |
| Psp5II | RGGWCCY | 1 cut(s) | 1081 |
| Psp6I | CCWGG | 2 cut(s) | 617, 1069 |
| PspCI | CACGTG | 2 cut(s) | 722, 740 |
| PspFI | CCCAGC | 1 cut(s) | 233 |
| PspGI | CCWGG | 2 cut(s) | 617, 1069 |
| PspN4I | GGNNCC | 4 cut(s) | 162, 829, 844, 870 |
| PspPI | GGNCC | 7 cut(s) | 160, 176, 767, 803, 827, 1031, 1081 |
| PspPPI | RGGWCCY | 1 cut(s) | 1081 |
| PsuI | RGATCY | 1 cut(s) | 868 |
| RsaI | GTAC | 3 cut(s) | 86, 823, 938 |
| RsaNI | GTAC | 3 cut(s) | 85, 822, 937 |
| RseI | CAYNNNNRTG | 2 cut(s) | 119, 778 |
| SaqAI | TTAA | 1 cut(s) | 410 |
| SatI | GCNGC | 1 cut(s) | 404 |
| Sau3AI | GATC | 4 cut(s) | 459, 561, 709, 868 |
| Sau96I | GGNCC | 7 cut(s) | 160, 176, 767, 803, 827, 1031, 1081 |
| SchI | GAGTC | 2 cut(s) | 62, 1001 |
| ScrFI | CCNGG | 2 cut(s) | 619, 1071 |
| SfaNI | GCATC | 1 cut(s) | 274 |
| SfcI | CTRYAG | 2 cut(s) | 910, 976 |
| SinI | GGWCC | 4 cut(s) | 160, 176, 827, 1081 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 119, 778 |
| Sse9I | AATT | 5 cut(s) | 24, 53, 78, 639, 1056 |
| SseBI | AGGCCT | 1 cut(s) | 622 |
| SsiI | CCGC | 1 cut(s) | 358 |
| SspMI | CTAG | 1 cut(s) | 503 |
| StuI | AGGCCT | 1 cut(s) | 622 |
| StyD4I | CCNGG | 2 cut(s) | 617, 1069 |
| StyI | CCWWGG | 2 cut(s) | 270, 846 |
| TaaI | ACNGT | 3 cut(s) | 92, 180, 340 |
| TaiI | ACGT | 5 cut(s) | 421, 706, 724, 742, 1104 |
| TasI | AATT | 5 cut(s) | 24, 53, 78, 639, 1056 |
| TfiI | GAWTC | 2 cut(s) | 38, 540 |
| Tru1I | TTAA | 1 cut(s) | 410 |
| Tru9I | TTAA | 1 cut(s) | 410 |
| TscAI | CASTG | 2 cut(s) | 95, 838 |
| TseI | GCWGC | 1 cut(s) | 403 |
| TspDTI | ATGAA | 4 cut(s) | 302, 366, 480, 1038 |
| TspGWI | ACGGA | 1 cut(s) | 173 |
| TspRI | CASTG | 2 cut(s) | 95, 838 |
| VpaK11BI | GGWCC | 4 cut(s) | 160, 176, 827, 1081 |
| XapI | RAATTY | 2 cut(s) | 53, 639 |
| XceI | RCATGY | 2 cut(s) | 403, 779 |
| XmnI | GAANNNNTTC | 1 cut(s) | 252 |
| XspI | CTAG | 1 cut(s) | 503 |