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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 300 |
| AccB1I | GGYRCC | 1 cut(s) | 277 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 336 |
| AccII | CGCG | 1 cut(s) | 390 |
| AciI | CCGC | 3 cut(s) | 388, 390, 415 |
| AclWI | GGATC | 2 cut(s) | 248, 400 |
| AcsI | RAATTY | 1 cut(s) | 183 |
| AcuI | CTGAAG | 1 cut(s) | 18 |
| AcvI | CACGTG | 2 cut(s) | 266, 284 |
| AdeI | CACNNNGTG | 1 cut(s) | 284 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 336 |
| AgsI | TTSAA | 2 cut(s) | 97, 151 |
| AjiI | CACGTC | 1 cut(s) | 296 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 225, 257 |
| AluBI | AGCT | 2 cut(s) | 103, 194 |
| AluI | AGCT | 2 cut(s) | 103, 194 |
| AlwI | GGATC | 2 cut(s) | 248, 400 |
| AoxI | GGCC | 9 cut(s) | 164, 313, 322, 358, 371, 401, 411, 419, 440 |
| ApoI | RAATTY | 1 cut(s) | 183 |
| AspLEI | GCGC | 1 cut(s) | 342 |
| AspS9I | GGNCC | 8 cut(s) | 142, 313, 323, 359, 401, 412, 420, 441 |
| AsuC2I | CCSGG | 3 cut(s) | 423, 439, 444 |
| AvaII | GGWCC | 1 cut(s) | 142 |
| BanI | GGYRCC | 1 cut(s) | 277 |
| BbrPI | CACGTG | 2 cut(s) | 266, 284 |
| BbsI | GAAGAC | 1 cut(s) | 17 |
| BccI | CCATC | 1 cut(s) | 400 |
| BceAI | ACGGC | 1 cut(s) | 300 |
| BclI | TGATCA | 1 cut(s) | 105 |
| BcnI | CCSGG | 3 cut(s) | 423, 439, 444 |
| BfaI | CTAG | 2 cut(s) | 47, 363 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 321, 427 |
| Bme1390I | CCNGG | 3 cut(s) | 423, 439, 444 |
| Bme18I | GGWCC | 1 cut(s) | 142 |
| BmgBI | CACGTC | 1 cut(s) | 296 |
| BmgT120I | GGNCC | 8 cut(s) | 142, 313, 323, 359, 401, 412, 420, 441 |
| BmiI | GGNNCC | 1 cut(s) | 279 |
| BmrFI | CCNGG | 3 cut(s) | 423, 439, 444 |
| BpiI | GAAGAC | 1 cut(s) | 17 |
| BpmI | CTGGAG | 1 cut(s) | 86 |
| BpuMI | CCSGG | 3 cut(s) | 423, 439, 444 |
| BsaAI | YACGTR | 2 cut(s) | 266, 284 |
| BsaJI | CCNNGG | 2 cut(s) | 316, 388 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 336 |
| Bse118I | RCCGGY | 1 cut(s) | 417 |
| Bse1I | ACTGG | 1 cut(s) | 55 |
| BseDI | CCNNGG | 2 cut(s) | 316, 388 |
| BseGI | GGATG | 1 cut(s) | 251 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 336 |
| BseMII | CTCAG | 1 cut(s) | 117 |
| BseNI | ACTGG | 1 cut(s) | 55 |
| Bsh1236I | CGCG | 1 cut(s) | 390 |
| BshFI | GGCC | 9 cut(s) | 166, 315, 324, 360, 373, 403, 413, 421, 442 |
| BshNI | GGYRCC | 1 cut(s) | 277 |
| BsiSI | CCGG | 4 cut(s) | 418, 423, 439, 444 |
| BslFI | GGGAC | 2 cut(s) | 187, 306 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 336 |
| BsmFI | GGGAC | 2 cut(s) | 187, 306 |
| BsnI | GGCC | 9 cut(s) | 166, 315, 324, 360, 373, 403, 413, 421, 442 |
| Bsp143I | GATC | 4 cut(s) | 3, 105, 253, 392 |
| BspACI | CCGC | 3 cut(s) | 388, 390, 415 |
| BspANI | GGCC | 9 cut(s) | 166, 315, 324, 360, 373, 403, 413, 421, 442 |
| BspCNI | CTCAG | 1 cut(s) | 118 |
| BspFNI | CGCG | 1 cut(s) | 390 |
| BspLI | GGNNCC | 1 cut(s) | 279 |
| BspPI | GGATC | 2 cut(s) | 248, 400 |
| BspT107I | GGYRCC | 1 cut(s) | 277 |
| BsrFI | RCCGGY | 1 cut(s) | 417 |
| BsrI | ACTGG | 1 cut(s) | 55 |
| BssAI | RCCGGY | 1 cut(s) | 417 |
| BssECI | CCNNGG | 2 cut(s) | 316, 388 |
| BssMI | GATC | 4 cut(s) | 3, 105, 253, 392 |
| Bst4CI | ACNGT | 1 cut(s) | 208 |
| BstBAI | YACGTR | 2 cut(s) | 266, 284 |
| BstC8I | GCNNGC | 3 cut(s) | 388, 415, 419 |
| BstDEI | CTNAG | 1 cut(s) | 126 |
| BstDSI | CCRYGG | 2 cut(s) | 316, 388 |
| BstF5I | GGATG | 1 cut(s) | 251 |
| BstFNI | CGCG | 1 cut(s) | 390 |
| BstHHI | GCGC | 1 cut(s) | 342 |
| BstKTI | GATC | 4 cut(s) | 6, 108, 256, 395 |
| BstMBI | GATC | 4 cut(s) | 3, 105, 253, 392 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 321, 427 |
| BstSCI | CCNGG | 2 cut(s) | 421, 437 |
| BstUI | CGCG | 1 cut(s) | 390 |
| BstV2I | GAAGAC | 1 cut(s) | 17 |
| BsuRI | GGCC | 9 cut(s) | 166, 315, 324, 360, 373, 403, 413, 421, 442 |
| BtgI | CCRYGG | 2 cut(s) | 316, 388 |
| BtrI | CACGTC | 1 cut(s) | 296 |
| BtsCI | GGATG | 1 cut(s) | 251 |
| BtsIMutI | CAGTG | 1 cut(s) | 213 |
| Cac8I | GCNNGC | 3 cut(s) | 388, 415, 419 |
| CfoI | GCGC | 1 cut(s) | 342 |
| Cfr10I | RCCGGY | 1 cut(s) | 417 |
| Cfr13I | GGNCC | 8 cut(s) | 142, 313, 323, 359, 401, 412, 420, 441 |
| Cfr42I | CCGCGG | 1 cut(s) | 391 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 277, 312 |
| DdeI | CTNAG | 1 cut(s) | 126 |
| DpnI | GATC | 4 cut(s) | 5, 107, 255, 394 |
| DpnII | GATC | 4 cut(s) | 3, 105, 253, 392 |
| DraIII | CACNNNGTG | 1 cut(s) | 284 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 300 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 300 |
| Eco147I | AGGCCT | 1 cut(s) | 373 |
| Eco47I | GGWCC | 1 cut(s) | 142 |
| Eco57I | CTGAAG | 1 cut(s) | 18 |
| Eco72I | CACGTG | 2 cut(s) | 266, 284 |
| EcoO109I | RGGNCCY | 2 cut(s) | 142, 323 |
| FaiI | YATR | 7 cut(s) | 44, 60, 72, 135, 201, 311, 337 |
| FaqI | GGGAC | 2 cut(s) | 187, 306 |
| FauI | CCCGC | 2 cut(s) | 395, 422 |
| FbaI | TGATCA | 1 cut(s) | 105 |
| FokI | GGATG | 1 cut(s) | 258 |
| FspBI | CTAG | 2 cut(s) | 47, 363 |
| GlaI | GCGC | 1 cut(s) | 341 |
| GsuI | CTGGAG | 1 cut(s) | 86 |
| HaeIII | GGCC | 9 cut(s) | 166, 315, 324, 360, 373, 403, 413, 421, 442 |
| HapII | CCGG | 4 cut(s) | 418, 423, 439, 444 |
| HhaI | GCGC | 1 cut(s) | 342 |
| Hin6I | GCGC | 1 cut(s) | 340 |
| HinP1I | GCGC | 1 cut(s) | 340 |
| HinfI | GANTC | 2 cut(s) | 13, 84 |
| HpaII | CCGG | 4 cut(s) | 418, 423, 439, 444 |
| Hpy188III | TCNNGA | 2 cut(s) | 7, 188 |
| HpyAV | CCTTC | 1 cut(s) | 103 |
| HpyCH4III | ACNGT | 1 cut(s) | 208 |
| HpyCH4IV | ACGT | 3 cut(s) | 265, 283, 295 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 321, 427 |
| HpyF3I | CTNAG | 1 cut(s) | 126 |
| HpySE526I | ACGT | 3 cut(s) | 265, 283, 295 |
| HspAI | GCGC | 1 cut(s) | 340 |
| KroI | GCCGGC | 1 cut(s) | 417 |
| KroNI | GCCGGC | 1 cut(s) | 419 |
| Ksp22I | TGATCA | 1 cut(s) | 105 |
| KspI | CCGCGG | 1 cut(s) | 391 |
| Kzo9I | GATC | 4 cut(s) | 3, 105, 253, 392 |
| LpnPI | CCDG | 6 cut(s) | 20, 50, 68, 180, 431, 436 |
| MaeI | CTAG | 2 cut(s) | 47, 363 |
| MaeII | ACGT | 3 cut(s) | 265, 283, 295 |
| MalI | GATC | 4 cut(s) | 5, 107, 255, 394 |
| MboI | GATC | 4 cut(s) | 3, 105, 253, 392 |
| MboII | GAAGA | 1 cut(s) | 22 |
| MluCI | AATT | 2 cut(s) | 183, 196 |
| MlyI | GAGTC | 1 cut(s) | 7 |
| MmeI | TCCRAC | 1 cut(s) | 223 |
| MnlI | CCTC | 7 cut(s) | 123, 133, 314, 336, 384, 403, 419 |
| MroNI | GCCGGC | 1 cut(s) | 417 |
| MspA1I | CMGCKG | 1 cut(s) | 390 |
| MspI | CCGG | 4 cut(s) | 418, 423, 439, 444 |
| MspR9I | CCNGG | 3 cut(s) | 423, 439, 444 |
| MvnI | CGCG | 1 cut(s) | 390 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 321, 427 |
| NaeI | GCCGGC | 1 cut(s) | 419 |
| NciI | CCSGG | 3 cut(s) | 423, 439, 444 |
| NdeII | GATC | 4 cut(s) | 3, 105, 253, 392 |
| NgoMIV | GCCGGC | 1 cut(s) | 417 |
| NlaIV | GGNNCC | 1 cut(s) | 279 |
| NmeAIII | GCCGAG | 1 cut(s) | 142 |
| PceI | AGGCCT | 1 cut(s) | 373 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 301 |
| PdiI | GCCGGC | 1 cut(s) | 419 |
| PfeI | GAWTC | 1 cut(s) | 84 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 336 |
| PleI | GAGTC | 1 cut(s) | 7 |
| PmaCI | CACGTG | 2 cut(s) | 266, 284 |
| PmlI | CACGTG | 2 cut(s) | 266, 284 |
| PpsI | GAGTC | 1 cut(s) | 7 |
| Ppu21I | YACGTR | 2 cut(s) | 266, 284 |
| PpuMI | RGGWCCY | 1 cut(s) | 142 |
| Psp5II | RGGWCCY | 1 cut(s) | 142 |
| PspCI | CACGTG | 2 cut(s) | 266, 284 |
| PspN4I | GGNNCC | 1 cut(s) | 279 |
| PspPI | GGNCC | 8 cut(s) | 142, 313, 323, 359, 401, 412, 420, 441 |
| PspPPI | RGGWCCY | 1 cut(s) | 142 |
| SacII | CCGCGG | 1 cut(s) | 391 |
| Sau3AI | GATC | 4 cut(s) | 3, 105, 253, 392 |
| Sau96I | GGNCC | 8 cut(s) | 142, 313, 323, 359, 401, 412, 420, 441 |
| SchI | GAGTC | 1 cut(s) | 7 |
| ScrFI | CCNGG | 3 cut(s) | 423, 439, 444 |
| SetI | ASST | 9 cut(s) | 95, 105, 114, 144, 196, 217, 268, 286, 298 |
| SfiI | GGCCNNNNNGGCC | 1 cut(s) | 321 |
| Sfr303I | CCGCGG | 1 cut(s) | 391 |
| SgrBI | CCGCGG | 1 cut(s) | 391 |
| SinI | GGWCC | 1 cut(s) | 142 |
| Sse9I | AATT | 2 cut(s) | 183, 196 |
| SseBI | AGGCCT | 1 cut(s) | 373 |
| SsiI | CCGC | 3 cut(s) | 388, 390, 415 |
| SspMI | CTAG | 2 cut(s) | 47, 363 |
| StuI | AGGCCT | 1 cut(s) | 373 |
| StyD4I | CCNGG | 2 cut(s) | 421, 437 |
| TaaI | ACNGT | 1 cut(s) | 208 |
| TaiI | ACGT | 3 cut(s) | 268, 286, 298 |
| TasI | AATT | 2 cut(s) | 183, 196 |
| TfiI | GAWTC | 1 cut(s) | 84 |
| TscAI | CASTG | 1 cut(s) | 213 |
| TspDTI | ATGAA | 1 cut(s) | 246 |
| TspRI | CASTG | 1 cut(s) | 213 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 336 |
| VpaK11BI | GGWCC | 1 cut(s) | 142 |
| XapI | RAATTY | 1 cut(s) | 183 |
| XspI | CTAG | 2 cut(s) | 47, 363 |