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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 2 cut(s) | 225, 256 |
| Acc36I | ACCTGC | 3 cut(s) | 225, 256, 318 |
| AccB1I | GGYRCC | 1 cut(s) | 56 |
| AccI | GTMKAC | 1 cut(s) | 138 |
| AccII | CGCG | 1 cut(s) | 226 |
| AciI | CCGC | 4 cut(s) | 180, 224, 243, 269 |
| AclWI | GGATC | 4 cut(s) | 43, 56, 335, 518 |
| AcsI | RAATTY | 2 cut(s) | 68, 356 |
| AcuI | CTGAAG | 1 cut(s) | 533 |
| AfaI | GTAC | 2 cut(s) | 389, 545 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 189, 291, 397, 538 |
| AgsI | TTSAA | 3 cut(s) | 77, 83, 556 |
| AjnI | CCWGG | 1 cut(s) | 234 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 36, 68 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 78, 110 |
| AluBI | AGCT | 2 cut(s) | 321, 338 |
| AluI | AGCT | 2 cut(s) | 321, 338 |
| AlwI | GGATC | 4 cut(s) | 43, 56, 335, 518 |
| AoxI | GGCC | 2 cut(s) | 237, 293 |
| ApeKI | GCWGC | 4 cut(s) | 166, 204, 228, 318 |
| ApoI | RAATTY | 2 cut(s) | 68, 356 |
| AspLEI | GCGC | 2 cut(s) | 178, 228 |
| AspS9I | GGNCC | 2 cut(s) | 238, 307 |
| AsuHPI | GGTGA | 1 cut(s) | 496 |
| AsuII | TTCGAA | 1 cut(s) | 39 |
| AvaII | GGWCC | 1 cut(s) | 307 |
| BaeGI | GKGCMC | 1 cut(s) | 61 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 371, 404 |
| BamHI | GGATCC | 1 cut(s) | 48 |
| BanI | GGYRCC | 1 cut(s) | 56 |
| BbsI | GAAGAC | 1 cut(s) | 563 |
| BbvI | GCAGC | 4 cut(s) | 178, 215, 216, 330 |
| BccI | CCATC | 1 cut(s) | 95 |
| BciT130I | CCWGG | 1 cut(s) | 236 |
| BfaI | CTAG | 3 cut(s) | 173, 528, 628 |
| BfmI | CTRYAG | 1 cut(s) | 316 |
| BfoI | RGCGCY | 1 cut(s) | 179 |
| BfuAI | ACCTGC | 3 cut(s) | 225, 256, 318 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 425 |
| BisI | GCNGC | 4 cut(s) | 167, 205, 229, 319 |
| BlsI | GCNGC | 4 cut(s) | 168, 206, 230, 320 |
| Bme1390I | CCNGG | 1 cut(s) | 236 |
| Bme18I | GGWCC | 1 cut(s) | 307 |
| BmgT120I | GGNCC | 2 cut(s) | 238, 307 |
| BmiI | GGNNCC | 3 cut(s) | 50, 58, 240 |
| BmrFI | CCNGG | 1 cut(s) | 236 |
| BmrI | ACTGGG | 1 cut(s) | 547 |
| BmsI | GCATC | 3 cut(s) | 153, 484, 568 |
| BmuI | ACTGGG | 1 cut(s) | 547 |
| BpiI | GAAGAC | 1 cut(s) | 563 |
| Bpu14I | TTCGAA | 1 cut(s) | 39 |
| BpuEI | CTTGAG | 2 cut(s) | 143, 404 |
| BsaJI | CCNNGG | 2 cut(s) | 52, 234 |
| BsaWI | WCCGGW | 1 cut(s) | 304 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 7, 37, 78, 96, 108, 126, 305, 335 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 189, 291, 397, 538 |
| Bse1I | ACTGG | 1 cut(s) | 542 |
| BseBI | CCWGG | 1 cut(s) | 236 |
| BseDI | CCNNGG | 2 cut(s) | 52, 234 |
| BseGI | GGATG | 1 cut(s) | 583 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 189, 291, 397, 538 |
| BseMII | CTCAG | 2 cut(s) | 387, 500 |
| BseNI | ACTGG | 1 cut(s) | 542 |
| BseRI | GAGGAG | 3 cut(s) | 31, 140, 143 |
| BseSI | GKGCMC | 1 cut(s) | 61 |
| BseXI | GCAGC | 4 cut(s) | 178, 215, 216, 330 |
| BseYI | CCCAGC | 1 cut(s) | 255 |
| BsgI | GTGCAG | 4 cut(s) | 203, 234, 296, 310 |
| Bsh1236I | CGCG | 1 cut(s) | 226 |
| BshFI | GGCC | 2 cut(s) | 239, 295 |
| BshNI | GGYRCC | 1 cut(s) | 56 |
| BsiSI | CCGG | 1 cut(s) | 305 |
| BslFI | GGGAC | 1 cut(s) | 132 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 189, 291, 397, 538 |
| BsmFI | GGGAC | 1 cut(s) | 132 |
| BsnI | GGCC | 2 cut(s) | 239, 295 |
| Bsp119I | TTCGAA | 1 cut(s) | 39 |
| Bsp1286I | GDGCHC | 1 cut(s) | 61 |
| Bsp143I | GATC | 4 cut(s) | 48, 187, 340, 523 |
| BspACI | CCGC | 4 cut(s) | 180, 224, 243, 269 |
| BspANI | GGCC | 2 cut(s) | 239, 295 |
| BspCNI | CTCAG | 2 cut(s) | 386, 501 |
| BspFNI | CGCG | 1 cut(s) | 226 |
| BspHI | TCATGA | 1 cut(s) | 607 |
| BspLI | GGNNCC | 3 cut(s) | 50, 58, 240 |
| BspMAI | CTGCAG | 1 cut(s) | 320 |
| BspMI | ACCTGC | 3 cut(s) | 225, 256, 318 |
| BspPI | GGATC | 4 cut(s) | 43, 56, 335, 518 |
| BspT104I | TTCGAA | 1 cut(s) | 39 |
| BspT107I | GGYRCC | 1 cut(s) | 56 |
| BsrI | ACTGG | 1 cut(s) | 542 |
| BssECI | CCNNGG | 2 cut(s) | 52, 234 |
| BssMI | GATC | 4 cut(s) | 48, 187, 340, 523 |
| BssT1I | CCWWGG | 1 cut(s) | 52 |
| Bst2UI | CCWGG | 1 cut(s) | 236 |
| Bst4CI | ACNGT | 1 cut(s) | 395 |
| BstBI | TTCGAA | 1 cut(s) | 39 |
| BstC8I | GCNNGC | 3 cut(s) | 180, 273, 293 |
| BstDEI | CTNAG | 2 cut(s) | 373, 509 |
| BstF5I | GGATG | 1 cut(s) | 583 |
| BstFNI | CGCG | 1 cut(s) | 226 |
| BstH2I | RGCGCY | 1 cut(s) | 179 |
| BstHHI | GCGC | 2 cut(s) | 178, 228 |
| BstKTI | GATC | 4 cut(s) | 51, 190, 343, 526 |
| BstMBI | GATC | 4 cut(s) | 48, 187, 340, 523 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 175, 272, 281, 425 |
| BstNI | CCWGG | 1 cut(s) | 236 |
| BstSCI | CCNGG | 1 cut(s) | 234 |
| BstSFI | CTRYAG | 1 cut(s) | 316 |
| BstSLI | GKGCMC | 1 cut(s) | 61 |
| BstUI | CGCG | 1 cut(s) | 226 |
| BstV1I | GCAGC | 4 cut(s) | 178, 215, 216, 330 |
| BstV2I | GAAGAC | 1 cut(s) | 563 |
| BstX2I | RGATCY | 1 cut(s) | 48 |
| BstYI | RGATCY | 1 cut(s) | 48 |
| BsuRI | GGCC | 2 cut(s) | 239, 295 |
| BtsCI | GGATG | 1 cut(s) | 583 |
| BtsI | GCAGTG | 2 cut(s) | 313, 438 |
| BtsIMutI | CAGTG | 3 cut(s) | 313, 438, 535 |
| BveI | ACCTGC | 3 cut(s) | 225, 256, 318 |
| Cac8I | GCNNGC | 3 cut(s) | 180, 273, 293 |
| CciI | TCATGA | 1 cut(s) | 607 |
| CfoI | GCGC | 2 cut(s) | 178, 228 |
| Cfr13I | GGNCC | 2 cut(s) | 238, 307 |
| CseI | GACGC | 1 cut(s) | 600 |
| Csp6I | GTAC | 2 cut(s) | 388, 544 |
| CviAII | CATG | 2 cut(s) | 12, 608 |
| CviJI | RGCY | 9 cut(s) | 169, 207, 239, 259, 284, 295, 321, 338, 531 |
| CviKI_1 | RGCY | 9 cut(s) | 169, 207, 239, 259, 284, 295, 321, 338, 531 |
| CviQI | GTAC | 2 cut(s) | 388, 544 |
| DdeI | CTNAG | 2 cut(s) | 373, 509 |
| DpnI | GATC | 4 cut(s) | 50, 189, 342, 525 |
| DpnII | GATC | 4 cut(s) | 48, 187, 340, 523 |
| Eco130I | CCWWGG | 1 cut(s) | 52 |
| Eco47I | GGWCC | 1 cut(s) | 307 |
| Eco57I | CTGAAG | 1 cut(s) | 533 |
| EcoRII | CCWGG | 1 cut(s) | 234 |
| EcoT14I | CCWWGG | 1 cut(s) | 52 |
| ErhI | CCWWGG | 1 cut(s) | 52 |
| FaeI | CATG | 2 cut(s) | 15, 611 |
| FaiI | YATR | 3 cut(s) | 13, 519, 609 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 36, 68 |
| FaqI | GGGAC | 1 cut(s) | 132 |
| FatI | CATG | 2 cut(s) | 11, 607 |
| FauI | CCCGC | 4 cut(s) | 187, 231, 250, 276 |
| FblI | GTMKAC | 1 cut(s) | 138 |
| Fnu4HI | GCNGC | 4 cut(s) | 167, 205, 229, 319 |
| FokI | GGATG | 1 cut(s) | 590 |
| Fsp4HI | GCNGC | 4 cut(s) | 167, 205, 229, 319 |
| FspBI | CTAG | 3 cut(s) | 173, 528, 628 |
| GlaI | GCGC | 2 cut(s) | 177, 227 |
| GluI | GCNGC | 4 cut(s) | 167, 205, 229, 319 |
| GsaI | CCCAGC | 1 cut(s) | 259 |
| HaeII | RGCGCY | 1 cut(s) | 179 |
| HaeIII | GGCC | 2 cut(s) | 239, 295 |
| HapII | CCGG | 1 cut(s) | 305 |
| HgaI | GACGC | 1 cut(s) | 600 |
| HhaI | GCGC | 2 cut(s) | 178, 228 |
| Hin1II | CATG | 2 cut(s) | 15, 611 |
| Hin6I | GCGC | 2 cut(s) | 176, 226 |
| HinP1I | GCGC | 2 cut(s) | 176, 226 |
| HinfI | GANTC | 1 cut(s) | 371 |
| HpaII | CCGG | 1 cut(s) | 305 |
| HphI | GGTGA | 1 cut(s) | 496 |
| Hpy166II | GTNNAC | 1 cut(s) | 139 |
| Hpy188I | TCNGA | 4 cut(s) | 325, 376, 406, 510 |
| Hpy188III | TCNNGA | 3 cut(s) | 98, 608, 622 |
| Hpy8I | GTNNAC | 1 cut(s) | 139 |
| Hpy99I | CGWCG | 2 cut(s) | 198, 201 |
| HpyAV | CCTTC | 3 cut(s) | 38, 77, 557 |
| HpyCH4III | ACNGT | 1 cut(s) | 395 |
| HpyCH4IV | ACGT | 1 cut(s) | 199 |
| HpyCH4V | TGCA | 6 cut(s) | 166, 220, 251, 291, 313, 318 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 175, 272, 281, 425 |
| HpyF3I | CTNAG | 2 cut(s) | 373, 509 |
| HpySE526I | ACGT | 1 cut(s) | 199 |
| Hsp92II | CATG | 2 cut(s) | 15, 611 |
| HspAI | GCGC | 2 cut(s) | 176, 226 |
| Kzo9I | GATC | 4 cut(s) | 48, 187, 340, 523 |
| LmnI | GCTCC | 2 cut(s) | 236, 326 |
| Lsp1109I | GCAGC | 4 cut(s) | 178, 215, 216, 330 |
| LweI | GCATC | 3 cut(s) | 153, 484, 568 |
| MaeI | CTAG | 3 cut(s) | 173, 528, 628 |
| MaeII | ACGT | 1 cut(s) | 199 |
| MalI | GATC | 4 cut(s) | 50, 189, 342, 525 |
| MboI | GATC | 4 cut(s) | 48, 187, 340, 523 |
| MboII | GAAGA | 2 cut(s) | 53, 568 |
| MflI | RGATCY | 1 cut(s) | 48 |
| MhlI | GDGCHC | 1 cut(s) | 61 |
| MluCI | AATT | 4 cut(s) | 68, 78, 356, 569 |
| MlyI | GAGTC | 1 cut(s) | 365 |
| MmeI | TCCRAC | 2 cut(s) | 348, 368 |
| MnlI | CCTC | 9 cut(s) | 9, 14, 41, 82, 100, 118, 121, 124, 504 |
| MseI | TTAA | 2 cut(s) | 500, 585 |
| MspI | CCGG | 1 cut(s) | 305 |
| MspR9I | CCNGG | 1 cut(s) | 236 |
| MvaI | CCWGG | 1 cut(s) | 236 |
| MvnI | CGCG | 1 cut(s) | 226 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 175, 272, 281, 425 |
| NdeII | GATC | 4 cut(s) | 48, 187, 340, 523 |
| NlaIII | CATG | 2 cut(s) | 15, 611 |
| NlaIV | GGNNCC | 3 cut(s) | 50, 58, 240 |
| NspV | TTCGAA | 1 cut(s) | 39 |
| PagI | TCATGA | 1 cut(s) | 607 |
| PaqCI | CACCTGC | 2 cut(s) | 225, 256 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 196 |
| PkrI | GCNGC | 4 cut(s) | 168, 206, 230, 320 |
| PleI | GAGTC | 1 cut(s) | 365 |
| PpsI | GAGTC | 1 cut(s) | 365 |
| Psp6I | CCWGG | 1 cut(s) | 234 |
| PspFI | CCCAGC | 1 cut(s) | 255 |
| PspGI | CCWGG | 1 cut(s) | 234 |
| PspN4I | GGNNCC | 3 cut(s) | 50, 58, 240 |
| PspPI | GGNCC | 2 cut(s) | 238, 307 |
| PstI | CTGCAG | 1 cut(s) | 320 |
| PsuI | RGATCY | 1 cut(s) | 48 |
| RsaI | GTAC | 2 cut(s) | 389, 545 |
| RsaNI | GTAC | 2 cut(s) | 388, 544 |
| SaqAI | TTAA | 2 cut(s) | 500, 585 |
| SatI | GCNGC | 4 cut(s) | 167, 205, 229, 319 |
| Sau3AI | GATC | 4 cut(s) | 48, 187, 340, 523 |
| Sau96I | GGNCC | 2 cut(s) | 238, 307 |
| SchI | GAGTC | 1 cut(s) | 365 |
| ScrFI | CCNGG | 1 cut(s) | 236 |
| SduI | GDGCHC | 1 cut(s) | 61 |
| SfaNI | GCATC | 3 cut(s) | 153, 484, 568 |
| SfcI | CTRYAG | 1 cut(s) | 316 |
| SfuI | TTCGAA | 1 cut(s) | 39 |
| SinI | GGWCC | 1 cut(s) | 307 |
| SmlI | CTYRAG | 2 cut(s) | 122, 383 |
| SmoI | CTYRAG | 2 cut(s) | 122, 383 |
| Sse9I | AATT | 4 cut(s) | 68, 78, 356, 569 |
| SsiI | CCGC | 4 cut(s) | 180, 224, 243, 269 |
| SspMI | CTAG | 3 cut(s) | 173, 528, 628 |
| StyD4I | CCNGG | 1 cut(s) | 234 |
| StyI | CCWWGG | 1 cut(s) | 52 |
| TaaI | ACNGT | 1 cut(s) | 395 |
| TaiI | ACGT | 1 cut(s) | 202 |
| TaqI | TCGA | 2 cut(s) | 39, 349 |
| TasI | AATT | 4 cut(s) | 68, 78, 356, 569 |
| Tru1I | TTAA | 2 cut(s) | 500, 585 |
| Tru9I | TTAA | 2 cut(s) | 500, 585 |
| TscAI | CASTG | 3 cut(s) | 320, 445, 542 |
| TseI | GCWGC | 4 cut(s) | 166, 204, 228, 318 |
| TspDTI | ATGAA | 2 cut(s) | 483, 596 |
| TspRI | CASTG | 3 cut(s) | 320, 445, 542 |
| VpaK11BI | GGWCC | 1 cut(s) | 307 |
| XapI | RAATTY | 2 cut(s) | 68, 356 |
| XmiI | GTMKAC | 1 cut(s) | 138 |
| XspI | CTAG | 3 cut(s) | 173, 528, 628 |