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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 181 |
| Acc16I | TGCGCA | 1 cut(s) | 99 |
| Acc36I | ACCTGC | 1 cut(s) | 181 |
| AccII | CGCG | 1 cut(s) | 210 |
| AciI | CCGC | 6 cut(s) | 18, 21, 41, 114, 373, 421 |
| AclWI | GGATC | 2 cut(s) | 188, 469 |
| AcoI | YGGCCR | 1 cut(s) | 3 |
| AcsI | RAATTY | 1 cut(s) | 439 |
| AcuI | CTGAAG | 1 cut(s) | 489 |
| AfaI | GTAC | 2 cut(s) | 228, 348 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 188, 427 |
| AflIII | ACRYGT | 1 cut(s) | 414 |
| AgsI | TTSAA | 2 cut(s) | 406, 568 |
| AjiI | CACGTC | 1 cut(s) | 434 |
| AluBI | AGCT | 2 cut(s) | 265, 575 |
| AluI | AGCT | 2 cut(s) | 265, 575 |
| AlwI | GGATC | 2 cut(s) | 188, 469 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 53 |
| AoxI | GGCC | 3 cut(s) | 3, 131, 284 |
| ApeKI | GCWGC | 3 cut(s) | 15, 100, 176 |
| ApoI | RAATTY | 1 cut(s) | 439 |
| AspLEI | GCGC | 1 cut(s) | 100 |
| AsuHPI | GGTGA | 2 cut(s) | 100, 268 |
| BaeGI | GKGCMC | 1 cut(s) | 27 |
| BalI | TGGCCA | 1 cut(s) | 5 |
| BanII | GRGCYC | 1 cut(s) | 262 |
| BbsI | GAAGAC | 1 cut(s) | 488 |
| BbvCI | CCTCAGC | 1 cut(s) | 84 |
| BbvI | GCAGC | 3 cut(s) | 27, 112, 188 |
| BclI | TGATCA | 1 cut(s) | 577 |
| BfaI | CTAG | 2 cut(s) | 125, 518 |
| BfmI | CTRYAG | 3 cut(s) | 45, 118, 174 |
| BfuAI | ACCTGC | 1 cut(s) | 181 |
| BisI | GCNGC | 4 cut(s) | 16, 19, 101, 177 |
| BlsI | GCNGC | 4 cut(s) | 17, 20, 102, 178 |
| BmcAI | AGTACT | 1 cut(s) | 228 |
| BmgBI | CACGTC | 1 cut(s) | 434 |
| BmiI | GGNNCC | 1 cut(s) | 259 |
| BmrI | ACTGGG | 1 cut(s) | 218 |
| BmsI | GCATC | 1 cut(s) | 282 |
| BmuI | ACTGGG | 1 cut(s) | 218 |
| BoxI | GACNNNNGTC | 1 cut(s) | 155 |
| BpiI | GAAGAC | 1 cut(s) | 488 |
| BpmI | CTGGAG | 1 cut(s) | 557 |
| Bpu10I | CCTNAGC | 1 cut(s) | 84 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 188, 427 |
| Bse118I | RCCGGY | 2 cut(s) | 129, 200 |
| Bse1I | ACTGG | 1 cut(s) | 224 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 188, 427 |
| BseMII | CTCAG | 2 cut(s) | 98, 539 |
| BseNI | ACTGG | 1 cut(s) | 224 |
| BseRI | GAGGAG | 1 cut(s) | 270 |
| BseSI | GKGCMC | 1 cut(s) | 27 |
| BseXI | GCAGC | 3 cut(s) | 27, 112, 188 |
| BseYI | CCCAGC | 1 cut(s) | 261 |
| Bsh1236I | CGCG | 1 cut(s) | 210 |
| Bsh1285I | CGRYCG | 1 cut(s) | 201 |
| BshFI | GGCC | 3 cut(s) | 5, 133, 286 |
| BsiEI | CGRYCG | 1 cut(s) | 201 |
| BsiSI | CCGG | 3 cut(s) | 130, 201, 233 |
| BslFI | GGGAC | 1 cut(s) | 123 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 188, 427 |
| BsmFI | GGGAC | 1 cut(s) | 123 |
| BsnI | GGCC | 3 cut(s) | 5, 133, 286 |
| Bsp1286I | GDGCHC | 2 cut(s) | 27, 262 |
| Bsp143I | GATC | 3 cut(s) | 193, 474, 577 |
| BspACI | CCGC | 6 cut(s) | 18, 21, 41, 114, 373, 421 |
| BspANI | GGCC | 3 cut(s) | 5, 133, 286 |
| BspCNI | CTCAG | 2 cut(s) | 97, 538 |
| BspFNI | CGCG | 1 cut(s) | 210 |
| BspLI | GGNNCC | 1 cut(s) | 259 |
| BspMAI | CTGCAG | 2 cut(s) | 49, 178 |
| BspMI | ACCTGC | 1 cut(s) | 181 |
| BspPI | GGATC | 2 cut(s) | 188, 469 |
| BsrFI | RCCGGY | 2 cut(s) | 129, 200 |
| BsrI | ACTGG | 1 cut(s) | 224 |
| BssAI | RCCGGY | 2 cut(s) | 129, 200 |
| BssMI | GATC | 3 cut(s) | 193, 474, 577 |
| Bst4CI | ACNGT | 2 cut(s) | 154, 351 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 53 |
| BstC8I | GCNNGC | 7 cut(s) | 7, 23, 27, 45, 267, 271, 377 |
| BstDEI | CTNAG | 2 cut(s) | 84, 525 |
| BstFNI | CGCG | 1 cut(s) | 210 |
| BstHHI | GCGC | 1 cut(s) | 100 |
| BstKTI | GATC | 3 cut(s) | 196, 477, 580 |
| BstMBI | GATC | 3 cut(s) | 193, 474, 577 |
| BstMCI | CGRYCG | 1 cut(s) | 201 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 15, 53, 266 |
| BstNSI | RCATGY | 1 cut(s) | 418 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 155 |
| BstSFI | CTRYAG | 3 cut(s) | 45, 118, 174 |
| BstSLI | GKGCMC | 1 cut(s) | 27 |
| BstUI | CGCG | 1 cut(s) | 210 |
| BstV1I | GCAGC | 3 cut(s) | 27, 112, 188 |
| BstV2I | GAAGAC | 1 cut(s) | 488 |
| BsuRI | GGCC | 3 cut(s) | 5, 133, 286 |
| BtrI | CACGTC | 1 cut(s) | 434 |
| BtsI | GCAGTG | 2 cut(s) | 51, 315 |
| BtsIMutI | CAGTG | 2 cut(s) | 51, 315 |
| BveI | ACCTGC | 1 cut(s) | 181 |
| Cac8I | GCNNGC | 7 cut(s) | 7, 23, 27, 45, 267, 271, 377 |
| CaiI | CAGNNNCTG | 1 cut(s) | 53 |
| CfoI | GCGC | 1 cut(s) | 100 |
| Cfr10I | RCCGGY | 2 cut(s) | 129, 200 |
| Csp6I | GTAC | 2 cut(s) | 227, 347 |
| CviAII | CATG | 2 cut(s) | 243, 415 |
| CviQI | GTAC | 2 cut(s) | 227, 347 |
| DdeI | CTNAG | 2 cut(s) | 84, 525 |
| DpnI | GATC | 3 cut(s) | 195, 476, 579 |
| DpnII | GATC | 3 cut(s) | 193, 474, 577 |
| EaeI | YGGCCR | 1 cut(s) | 3 |
| EciI | GGCGGA | 1 cut(s) | 103 |
| Eco24I | GRGCYC | 1 cut(s) | 262 |
| Eco57I | CTGAAG | 1 cut(s) | 489 |
| EcoT38I | GRGCYC | 1 cut(s) | 262 |
| FaeI | CATG | 2 cut(s) | 246, 418 |
| FaiI | YATR | 8 cut(s) | 244, 416, 447, 468, 473, 515, 531, 543 |
| FaqI | GGGAC | 1 cut(s) | 123 |
| FatI | CATG | 2 cut(s) | 242, 414 |
| FauI | CCCGC | 2 cut(s) | 14, 48 |
| FbaI | TGATCA | 1 cut(s) | 577 |
| Fnu4HI | GCNGC | 4 cut(s) | 16, 19, 101, 177 |
| FriOI | GRGCYC | 1 cut(s) | 262 |
| Fsp4HI | GCNGC | 4 cut(s) | 16, 19, 101, 177 |
| FspBI | CTAG | 2 cut(s) | 125, 518 |
| FspI | TGCGCA | 1 cut(s) | 99 |
| GlaI | GCGC | 1 cut(s) | 99 |
| GluI | GCNGC | 4 cut(s) | 16, 19, 101, 177 |
| GsaI | CCCAGC | 1 cut(s) | 265 |
| GsuI | CTGGAG | 1 cut(s) | 557 |
| HaeIII | GGCC | 3 cut(s) | 5, 133, 286 |
| HapII | CCGG | 3 cut(s) | 130, 201, 233 |
| HhaI | GCGC | 1 cut(s) | 100 |
| Hin1II | CATG | 2 cut(s) | 246, 418 |
| Hin6I | GCGC | 1 cut(s) | 98 |
| HinP1I | GCGC | 1 cut(s) | 98 |
| HinfI | GANTC | 4 cut(s) | 165, 484, 523, 555 |
| HpaII | CCGG | 3 cut(s) | 130, 201, 233 |
| HphI | GGTGA | 2 cut(s) | 100, 268 |
| Hpy188I | TCNGA | 3 cut(s) | 76, 198, 254 |
| Hpy188III | TCNNGA | 2 cut(s) | 216, 478 |
| Hpy99I | CGWCG | 1 cut(s) | 161 |
| HpyAV | CCTTC | 2 cut(s) | 155, 574 |
| HpyCH4III | ACNGT | 2 cut(s) | 154, 351 |
| HpyCH4IV | ACGT | 1 cut(s) | 433 |
| HpyCH4V | TGCA | 5 cut(s) | 15, 47, 176, 273, 590 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 15, 53, 266 |
| HpyF3I | CTNAG | 2 cut(s) | 84, 525 |
| HpySE526I | ACGT | 1 cut(s) | 433 |
| Hsp92II | CATG | 2 cut(s) | 246, 418 |
| HspAI | GCGC | 1 cut(s) | 98 |
| Ksp22I | TGATCA | 1 cut(s) | 577 |
| Kzo9I | GATC | 3 cut(s) | 193, 474, 577 |
| LmnI | GCTCC | 1 cut(s) | 257 |
| Lsp1109I | GCAGC | 3 cut(s) | 27, 112, 188 |
| LweI | GCATC | 1 cut(s) | 282 |
| MaeI | CTAG | 2 cut(s) | 125, 518 |
| MaeII | ACGT | 1 cut(s) | 433 |
| MaeIII | GTNAC | 1 cut(s) | 49 |
| MalI | GATC | 3 cut(s) | 195, 476, 579 |
| MboI | GATC | 3 cut(s) | 193, 474, 577 |
| MboII | GAAGA | 1 cut(s) | 493 |
| MhlI | GDGCHC | 2 cut(s) | 27, 262 |
| MlsI | TGGCCA | 1 cut(s) | 5 |
| MluCI | AATT | 1 cut(s) | 439 |
| MluNI | TGGCCA | 1 cut(s) | 5 |
| MlyI | GAGTC | 3 cut(s) | 159, 478, 517 |
| MmeI | TCCRAC | 2 cut(s) | 221, 232 |
| MnlI | CCTC | 6 cut(s) | 93, 116, 121, 144, 248, 297 |
| Mox20I | TGGCCA | 1 cut(s) | 5 |
| MscI | TGGCCA | 1 cut(s) | 5 |
| MseI | TTAA | 1 cut(s) | 425 |
| Msp20I | TGGCCA | 1 cut(s) | 5 |
| MspA1I | CMGCKG | 1 cut(s) | 18 |
| MspI | CCGG | 3 cut(s) | 130, 201, 233 |
| MvnI | CGCG | 1 cut(s) | 210 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 15, 53, 266 |
| NdeII | GATC | 3 cut(s) | 193, 474, 577 |
| NlaIII | CATG | 2 cut(s) | 246, 418 |
| NlaIV | GGNNCC | 1 cut(s) | 259 |
| NmuCI | GTSAC | 1 cut(s) | 49 |
| NsbI | TGCGCA | 1 cut(s) | 99 |
| NspI | RCATGY | 1 cut(s) | 418 |
| PaqCI | CACCTGC | 1 cut(s) | 181 |
| PciI | ACATGT | 1 cut(s) | 414 |
| PfeI | GAWTC | 1 cut(s) | 555 |
| PkrI | GCNGC | 4 cut(s) | 17, 20, 102, 178 |
| PleI | GAGTC | 3 cut(s) | 159, 478, 517 |
| PpsI | GAGTC | 3 cut(s) | 159, 478, 517 |
| PscI | ACATGT | 1 cut(s) | 414 |
| PshAI | GACNNNNGTC | 1 cut(s) | 155 |
| PspFI | CCCAGC | 1 cut(s) | 261 |
| PspN4I | GGNNCC | 1 cut(s) | 259 |
| PstI | CTGCAG | 2 cut(s) | 49, 178 |
| PstNI | CAGNNNCTG | 1 cut(s) | 53 |
| RsaI | GTAC | 2 cut(s) | 228, 348 |
| RsaNI | GTAC | 2 cut(s) | 227, 347 |
| SaqAI | TTAA | 1 cut(s) | 425 |
| SatI | GCNGC | 4 cut(s) | 16, 19, 101, 177 |
| Sau3AI | GATC | 3 cut(s) | 193, 474, 577 |
| ScaI | AGTACT | 1 cut(s) | 228 |
| SchI | GAGTC | 3 cut(s) | 159, 478, 517 |
| SduI | GDGCHC | 2 cut(s) | 27, 262 |
| SetI | ASST | 7 cut(s) | 113, 175, 267, 436, 566, 577, 586 |
| SfaNI | GCATC | 1 cut(s) | 282 |
| SfcI | CTRYAG | 3 cut(s) | 45, 118, 174 |
| Sse9I | AATT | 1 cut(s) | 439 |
| SsiI | CCGC | 6 cut(s) | 18, 21, 41, 114, 373, 421 |
| SspMI | CTAG | 2 cut(s) | 125, 518 |
| TaaI | ACNGT | 2 cut(s) | 154, 351 |
| TaiI | ACGT | 1 cut(s) | 436 |
| TaqI | TCGA | 2 cut(s) | 159, 215 |
| TaqII | GACCGA | 1 cut(s) | 60 |
| TasI | AATT | 1 cut(s) | 439 |
| TatI | WGTACW | 1 cut(s) | 226 |
| TauI | GCSGC | 1 cut(s) | 21 |
| TfiI | GAWTC | 1 cut(s) | 555 |
| Tru1I | TTAA | 1 cut(s) | 425 |
| Tru9I | TTAA | 1 cut(s) | 425 |
| TscAI | CASTG | 2 cut(s) | 58, 322 |
| TseFI | GTSAC | 1 cut(s) | 49 |
| TseI | GCWGC | 3 cut(s) | 15, 100, 176 |
| Tsp45I | GTSAC | 1 cut(s) | 49 |
| TspDTI | ATGAA | 3 cut(s) | 231, 381, 468 |
| TspRI | CASTG | 2 cut(s) | 58, 322 |
| XapI | RAATTY | 1 cut(s) | 439 |
| XceI | RCATGY | 1 cut(s) | 418 |
| XspI | CTAG | 2 cut(s) | 125, 518 |
| ZrmI | AGTACT | 1 cut(s) | 228 |