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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 36, 247 |
| AclWI | GGATC | 3 cut(s) | 113, 592, 653 |
| AcsI | RAATTY | 1 cut(s) | 528 |
| AcuI | CTGAAG | 2 cut(s) | 128, 363 |
| AcvI | CACGTG | 1 cut(s) | 610 |
| AdeI | CACNNNGTG | 1 cut(s) | 628 |
| AfaI | GTAC | 1 cut(s) | 140 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 133 |
| AflII | CTTAAG | 1 cut(s) | 179 |
| AflIII | ACRYGT | 1 cut(s) | 288 |
| AgsI | TTSAA | 4 cut(s) | 151, 280, 442, 496 |
| AjiI | CACGTC | 2 cut(s) | 308, 592 |
| AluBI | AGCT | 2 cut(s) | 227, 456 |
| AluI | AGCT | 2 cut(s) | 227, 456 |
| Alw26I | GTCTC | 1 cut(s) | 469 |
| AlwI | GGATC | 3 cut(s) | 113, 592, 653 |
| Ama87I | CYCGRG | 1 cut(s) | 533 |
| AoxI | GGCC | 1 cut(s) | 107 |
| ApoI | RAATTY | 1 cut(s) | 528 |
| AspLEI | GCGC | 1 cut(s) | 297 |
| AsuHPI | GGTGA | 1 cut(s) | 91 |
| AvaI | CYCGRG | 1 cut(s) | 533 |
| BbrPI | CACGTG | 1 cut(s) | 610 |
| BbsI | GAAGAC | 1 cut(s) | 158 |
| BcoDI | GTCTC | 1 cut(s) | 469 |
| BfaI | CTAG | 3 cut(s) | 123, 224, 392 |
| BfmI | CTRYAG | 1 cut(s) | 693 |
| BfrI | CTTAAG | 1 cut(s) | 179 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 20 |
| BmeT110I | CYCGRG | 1 cut(s) | 533 |
| BmgBI | CACGTC | 2 cut(s) | 308, 592 |
| BmrI | ACTGGG | 1 cut(s) | 525 |
| BmsI | GCATC | 2 cut(s) | 163, 650 |
| BmuI | ACTGGG | 1 cut(s) | 525 |
| BpiI | GAAGAC | 1 cut(s) | 158 |
| BsaAI | YACGTR | 1 cut(s) | 610 |
| BsaJI | CCNNGG | 2 cut(s) | 534, 627 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 133 |
| Bse1I | ACTGG | 2 cut(s) | 400, 520 |
| BseDI | CCNNGG | 2 cut(s) | 534, 627 |
| BseGI | GGATG | 1 cut(s) | 178 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 133 |
| BseMII | CTCAG | 2 cut(s) | 95, 462 |
| BseNI | ACTGG | 2 cut(s) | 400, 520 |
| BseYI | CCCAGC | 1 cut(s) | 132 |
| BshFI | GGCC | 1 cut(s) | 109 |
| BsiHKCI | CYCGRG | 1 cut(s) | 533 |
| BslFI | GGGAC | 2 cut(s) | 198, 532 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 133 |
| BsmAI | GTCTC | 1 cut(s) | 469 |
| BsmFI | GGGAC | 2 cut(s) | 198, 532 |
| BsnI | GGCC | 1 cut(s) | 109 |
| BsoBI | CYCGRG | 1 cut(s) | 533 |
| Bsp143I | GATC | 4 cut(s) | 118, 348, 597, 645 |
| BspACI | CCGC | 2 cut(s) | 36, 247 |
| BspANI | GGCC | 1 cut(s) | 109 |
| BspCNI | CTCAG | 2 cut(s) | 96, 463 |
| BspHI | TCATGA | 1 cut(s) | 202 |
| BspPI | GGATC | 3 cut(s) | 113, 592, 653 |
| BspTI | CTTAAG | 1 cut(s) | 179 |
| BsrI | ACTGG | 2 cut(s) | 400, 520 |
| BssECI | CCNNGG | 2 cut(s) | 534, 627 |
| BssMI | GATC | 4 cut(s) | 118, 348, 597, 645 |
| BstAFI | CTTAAG | 1 cut(s) | 179 |
| BstBAI | YACGTR | 1 cut(s) | 610 |
| BstC8I | GCNNGC | 1 cut(s) | 251 |
| BstDEI | CTNAG | 2 cut(s) | 104, 471 |
| BstDSI | CCRYGG | 1 cut(s) | 627 |
| BstF5I | GGATG | 1 cut(s) | 178 |
| BstHHI | GCGC | 1 cut(s) | 297 |
| BstKTI | GATC | 4 cut(s) | 121, 351, 600, 648 |
| BstMAI | GTCTC | 1 cut(s) | 469 |
| BstMBI | GATC | 4 cut(s) | 118, 348, 597, 645 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 20 |
| BstNSI | RCATGY | 1 cut(s) | 292 |
| BstSFI | CTRYAG | 1 cut(s) | 693 |
| BstV2I | GAAGAC | 1 cut(s) | 158 |
| BsuRI | GGCC | 1 cut(s) | 109 |
| BtgI | CCRYGG | 1 cut(s) | 627 |
| BtrI | CACGTC | 2 cut(s) | 308, 592 |
| BtsCI | GGATG | 1 cut(s) | 178 |
| BtsIMutI | CAGTG | 2 cut(s) | 239, 513 |
| Cac8I | GCNNGC | 1 cut(s) | 251 |
| CciI | TCATGA | 1 cut(s) | 202 |
| CfoI | GCGC | 1 cut(s) | 297 |
| Csp6I | GTAC | 1 cut(s) | 139 |
| CviAII | CATG | 6 cut(s) | 203, 289, 619, 640, 649, 689 |
| CviJI | RGCY | 6 cut(s) | 109, 126, 227, 456, 470, 539 |
| CviKI_1 | RGCY | 6 cut(s) | 109, 126, 227, 456, 470, 539 |
| CviQI | GTAC | 1 cut(s) | 139 |
| DdeI | CTNAG | 2 cut(s) | 104, 471 |
| DpnI | GATC | 4 cut(s) | 120, 350, 599, 647 |
| DpnII | GATC | 4 cut(s) | 118, 348, 597, 645 |
| DraIII | CACNNNGTG | 1 cut(s) | 628 |
| Eco57I | CTGAAG | 2 cut(s) | 128, 363 |
| Eco72I | CACGTG | 1 cut(s) | 610 |
| Eco88I | CYCGRG | 1 cut(s) | 533 |
| FaeI | CATG | 6 cut(s) | 206, 292, 622, 643, 652, 692 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 294, 326 |
| FaqI | GGGAC | 2 cut(s) | 198, 532 |
| FatI | CATG | 6 cut(s) | 202, 288, 618, 639, 648, 688 |
| FokI | GGATG | 1 cut(s) | 185 |
| FspBI | CTAG | 3 cut(s) | 123, 224, 392 |
| GlaI | GCGC | 1 cut(s) | 296 |
| GsaI | CCCAGC | 1 cut(s) | 136 |
| HaeIII | GGCC | 1 cut(s) | 109 |
| HhaI | GCGC | 1 cut(s) | 297 |
| Hin1II | CATG | 6 cut(s) | 206, 292, 622, 643, 652, 692 |
| Hin6I | GCGC | 1 cut(s) | 295 |
| HinP1I | GCGC | 1 cut(s) | 295 |
| HincII | GTYRAC | 1 cut(s) | 678 |
| HindII | GTYRAC | 1 cut(s) | 678 |
| HindIII | AAGCTT | 1 cut(s) | 454 |
| HinfI | GANTC | 5 cut(s) | 243, 358, 429, 487, 704 |
| HphI | GGTGA | 1 cut(s) | 91 |
| Hpy166II | GTNNAC | 1 cut(s) | 678 |
| Hpy188I | TCNGA | 1 cut(s) | 105 |
| Hpy188III | TCNNGA | 3 cut(s) | 203, 493, 533 |
| Hpy8I | GTNNAC | 1 cut(s) | 678 |
| HpyAV | CCTTC | 2 cut(s) | 152, 448 |
| HpyCH4IV | ACGT | 4 cut(s) | 187, 307, 591, 609 |
| HpyCH4V | TGCA | 4 cut(s) | 463, 577, 622, 663 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 20 |
| HpyF3I | CTNAG | 2 cut(s) | 104, 471 |
| HpySE526I | ACGT | 4 cut(s) | 187, 307, 591, 609 |
| Hsp92II | CATG | 6 cut(s) | 206, 292, 622, 643, 652, 692 |
| HspAI | GCGC | 1 cut(s) | 295 |
| Kzo9I | GATC | 4 cut(s) | 118, 348, 597, 645 |
| LpnPI | CCDG | 5 cut(s) | 118, 231, 413, 501, 520 |
| LweI | GCATC | 2 cut(s) | 163, 650 |
| MaeI | CTAG | 3 cut(s) | 123, 224, 392 |
| MaeII | ACGT | 4 cut(s) | 187, 307, 591, 609 |
| MalI | GATC | 4 cut(s) | 120, 350, 599, 647 |
| MboI | GATC | 4 cut(s) | 118, 348, 597, 645 |
| MboII | GAAGA | 1 cut(s) | 163 |
| MluCI | AATT | 3 cut(s) | 164, 313, 528 |
| MlyI | GAGTC | 1 cut(s) | 352 |
| MmeI | TCCRAC | 1 cut(s) | 390 |
| MnlI | CCTC | 3 cut(s) | 99, 529, 579 |
| MseI | TTAA | 4 cut(s) | 95, 180, 299, 312 |
| MspCI | CTTAAG | 1 cut(s) | 179 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 20 |
| NdeII | GATC | 4 cut(s) | 118, 348, 597, 645 |
| NlaIII | CATG | 6 cut(s) | 206, 292, 622, 643, 652, 692 |
| NspI | RCATGY | 1 cut(s) | 292 |
| PagI | TCATGA | 1 cut(s) | 202 |
| PciI | ACATGT | 1 cut(s) | 288 |
| PfeI | GAWTC | 4 cut(s) | 243, 429, 487, 704 |
| PleI | GAGTC | 1 cut(s) | 352 |
| PmaCI | CACGTG | 1 cut(s) | 610 |
| PmlI | CACGTG | 1 cut(s) | 610 |
| PpsI | GAGTC | 1 cut(s) | 352 |
| Ppu21I | YACGTR | 1 cut(s) | 610 |
| PscI | ACATGT | 1 cut(s) | 288 |
| PspCI | CACGTG | 1 cut(s) | 610 |
| PspFI | CCCAGC | 1 cut(s) | 132 |
| RsaI | GTAC | 1 cut(s) | 140 |
| RsaNI | GTAC | 1 cut(s) | 139 |
| SaqAI | TTAA | 4 cut(s) | 95, 180, 299, 312 |
| Sau3AI | GATC | 4 cut(s) | 118, 348, 597, 645 |
| SchI | GAGTC | 1 cut(s) | 352 |
| SfaNI | GCATC | 2 cut(s) | 163, 650 |
| SfcI | CTRYAG | 1 cut(s) | 693 |
| SmlI | CTYRAG | 1 cut(s) | 179 |
| SmoI | CTYRAG | 1 cut(s) | 179 |
| Sse9I | AATT | 3 cut(s) | 164, 313, 528 |
| SsiI | CCGC | 2 cut(s) | 36, 247 |
| SspMI | CTAG | 3 cut(s) | 123, 224, 392 |
| TaiI | ACGT | 4 cut(s) | 190, 310, 594, 612 |
| TaqI | TCGA | 1 cut(s) | 5 |
| TasI | AATT | 3 cut(s) | 164, 313, 528 |
| TfiI | GAWTC | 4 cut(s) | 243, 429, 487, 704 |
| Tru1I | TTAA | 4 cut(s) | 95, 180, 299, 312 |
| Tru9I | TTAA | 4 cut(s) | 95, 180, 299, 312 |
| TscAI | CASTG | 2 cut(s) | 239, 520 |
| TspDTI | ATGAA | 5 cut(s) | 78, 191, 683, 696, 698 |
| TspRI | CASTG | 2 cut(s) | 239, 520 |
| Vha464I | CTTAAG | 1 cut(s) | 179 |
| XapI | RAATTY | 1 cut(s) | 528 |
| XceI | RCATGY | 1 cut(s) | 292 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 625 |
| XspI | CTAG | 3 cut(s) | 123, 224, 392 |