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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 1205 |
| AccBSI | CCGCTC | 1 cut(s) | 473 |
| AccI | GTMKAC | 1 cut(s) | 688 |
| AccIII | TCCGGA | 1 cut(s) | 361 |
| AciI | CCGC | 4 cut(s) | 138, 473, 476, 808 |
| AclWI | GGATC | 4 cut(s) | 430, 482, 674, 1153 |
| AcoI | YGGCCR | 2 cut(s) | 54, 465 |
| AcsI | RAATTY | 1 cut(s) | 1089 |
| AcuI | CTGAAG | 3 cut(s) | 143, 689, 924 |
| AcvI | CACGTG | 2 cut(s) | 1171, 1189 |
| AdeI | CACNNNGTG | 1 cut(s) | 1189 |
| AfaI | GTAC | 5 cut(s) | 155, 536, 701, 867, 1309 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 57, 124, 233, 361, 544, 795 |
| AflIII | ACRYGT | 1 cut(s) | 849 |
| AgsI | TTSAA | 5 cut(s) | 163, 794, 841, 1003, 1057 |
| AjiI | CACGTC | 1 cut(s) | 1201 |
| AjnI | CCWGG | 1 cut(s) | 56 |
| AluBI | AGCT | 5 cut(s) | 97, 306, 314, 485, 1009 |
| AluI | AGCT | 5 cut(s) | 97, 306, 314, 485, 1009 |
| Alw21I | GWGCWC | 1 cut(s) | 48 |
| Alw26I | GTCTC | 3 cut(s) | 180, 875, 1030 |
| AlwI | GGATC | 4 cut(s) | 430, 482, 674, 1153 |
| Ama87I | CYCGRG | 1 cut(s) | 232 |
| Aor13HI | TCCGGA | 1 cut(s) | 361 |
| AoxI | GGCC | 3 cut(s) | 54, 465, 1070 |
| ApeKI | GCWGC | 1 cut(s) | 237 |
| ApoI | RAATTY | 1 cut(s) | 1089 |
| AspLEI | GCGC | 1 cut(s) | 481 |
| AspS9I | GGNCC | 5 cut(s) | 115, 229, 455, 626, 1071 |
| AsuC2I | CCSGG | 3 cut(s) | 233, 234, 319 |
| AsuNHI | GCTAGC | 1 cut(s) | 481 |
| AvaI | CYCGRG | 1 cut(s) | 232 |
| AvaII | GGWCC | 4 cut(s) | 115, 229, 455, 626 |
| BalI | TGGCCA | 2 cut(s) | 56, 467 |
| BbrPI | CACGTG | 2 cut(s) | 1171, 1189 |
| BbsI | GAAGAC | 2 cut(s) | 151, 923 |
| Bbv12I | GWGCWC | 1 cut(s) | 48 |
| BbvI | GCAGC | 1 cut(s) | 224 |
| BccI | CCATC | 3 cut(s) | 26, 430, 602 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 270, 304 |
| BciT130I | CCWGG | 1 cut(s) | 58 |
| BciVI | GTATCC | 1 cut(s) | 727 |
| BclI | TGATCA | 2 cut(s) | 193, 1011 |
| BcnI | CCSGG | 3 cut(s) | 233, 234, 319 |
| BcoDI | GTCTC | 3 cut(s) | 180, 875, 1030 |
| BfaI | CTAG | 4 cut(s) | 482, 684, 953, 1077 |
| BfmI | CTRYAG | 1 cut(s) | 1281 |
| BfoI | RGCGCY | 1 cut(s) | 482 |
| BfuI | GTATCC | 1 cut(s) | 727 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 473 |
| BisI | GCNGC | 3 cut(s) | 238, 474, 477 |
| BlsI | GCNGC | 3 cut(s) | 239, 475, 478 |
| Bme1390I | CCNGG | 4 cut(s) | 58, 233, 234, 319 |
| Bme18I | GGWCC | 4 cut(s) | 115, 229, 455, 626 |
| BmeT110I | CYCGRG | 1 cut(s) | 232 |
| BmgBI | CACGTC | 1 cut(s) | 1201 |
| BmgT120I | GGNCC | 5 cut(s) | 115, 229, 455, 626, 1071 |
| BmiI | GGNNCC | 3 cut(s) | 231, 1050, 1232 |
| BmrFI | CCNGG | 4 cut(s) | 58, 233, 234, 319 |
| BmsI | GCATC | 2 cut(s) | 449, 900 |
| BmtI | GCTAGC | 1 cut(s) | 485 |
| BpiI | GAAGAC | 2 cut(s) | 151, 923 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 361, 393 |
| BpmI | CTGGAG | 1 cut(s) | 265 |
| BpuMI | CCSGG | 3 cut(s) | 233, 234, 319 |
| BsaAI | YACGTR | 2 cut(s) | 1171, 1189 |
| BsaJI | CCNNGG | 3 cut(s) | 51, 232, 1095 |
| BsaWI | WCCGGW | 2 cut(s) | 226, 361 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 57, 124, 233, 361, 544, 795 |
| Bse118I | RCCGGY | 1 cut(s) | 399 |
| Bse1I | ACTGG | 4 cut(s) | 141, 248, 344, 961 |
| Bse3DI | GCAATG | 1 cut(s) | 250 |
| BseAI | TCCGGA | 1 cut(s) | 361 |
| BseBI | CCWGG | 1 cut(s) | 58 |
| BseDI | CCNNGG | 3 cut(s) | 51, 232, 1095 |
| BseGI | GGATG | 2 cut(s) | 441, 443 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 57, 124, 233, 361, 544, 795 |
| BseMI | GCAATG | 1 cut(s) | 250 |
| BseMII | CTCAG | 3 cut(s) | 81, 534, 1023 |
| BseNI | ACTGG | 4 cut(s) | 141, 248, 344, 961 |
| BseXI | GCAGC | 1 cut(s) | 224 |
| BseYI | CCCAGC | 1 cut(s) | 693 |
| Bsh1285I | CGRYCG | 1 cut(s) | 138 |
| BshFI | GGCC | 3 cut(s) | 56, 467, 1072 |
| BsiEI | CGRYCG | 1 cut(s) | 138 |
| BsiHKAI | GWGCWC | 1 cut(s) | 48 |
| BsiHKCI | CYCGRG | 1 cut(s) | 232 |
| BsiSI | CCGG | 6 cut(s) | 227, 233, 296, 319, 362, 400 |
| BslFI | GGGAC | 3 cut(s) | 215, 759, 1211 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 57, 124, 233, 361, 544, 795 |
| BsmAI | GTCTC | 3 cut(s) | 180, 875, 1030 |
| BsmBI | CGTCTC | 1 cut(s) | 875 |
| BsmFI | GGGAC | 3 cut(s) | 215, 759, 1211 |
| BsnI | GGCC | 3 cut(s) | 56, 467, 1072 |
| BsoBI | CYCGRG | 1 cut(s) | 232 |
| Bsp1286I | GDGCHC | 1 cut(s) | 48 |
| Bsp13I | TCCGGA | 1 cut(s) | 361 |
| Bsp143I | GATC | 6 cut(s) | 193, 422, 487, 679, 1011, 1158 |
| BspACI | CCGC | 4 cut(s) | 138, 473, 476, 808 |
| BspANI | GGCC | 3 cut(s) | 56, 467, 1072 |
| BspCNI | CTCAG | 3 cut(s) | 82, 533, 1024 |
| BspEI | TCCGGA | 1 cut(s) | 361 |
| BspHI | TCATGA | 1 cut(s) | 763 |
| BspLI | GGNNCC | 3 cut(s) | 231, 1050, 1232 |
| BspOI | GCTAGC | 1 cut(s) | 485 |
| BspPI | GGATC | 4 cut(s) | 430, 482, 674, 1153 |
| BsrBI | CCGCTC | 1 cut(s) | 473 |
| BsrDI | GCAATG | 1 cut(s) | 250 |
| BsrFI | RCCGGY | 1 cut(s) | 399 |
| BsrI | ACTGG | 4 cut(s) | 141, 248, 344, 961 |
| BssAI | RCCGGY | 1 cut(s) | 399 |
| BssECI | CCNNGG | 3 cut(s) | 51, 232, 1095 |
| BssMI | GATC | 6 cut(s) | 193, 422, 487, 679, 1011, 1158 |
| BssT1I | CCWWGG | 1 cut(s) | 1095 |
| Bst2UI | CCWGG | 1 cut(s) | 58 |
| Bst4CI | ACNGT | 5 cut(s) | 79, 463, 630, 729, 790 |
| BstBAI | YACGTR | 2 cut(s) | 1171, 1189 |
| BstC8I | GCNNGC | 4 cut(s) | 9, 483, 812, 1326 |
| BstDEI | CTNAG | 5 cut(s) | 90, 520, 665, 1032, 1235 |
| BstDSI | CCRYGG | 1 cut(s) | 51 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 122 |
| BstF5I | GGATG | 2 cut(s) | 441, 443 |
| BstH2I | RGCGCY | 1 cut(s) | 482 |
| BstHHI | GCGC | 1 cut(s) | 481 |
| BstKTI | GATC | 6 cut(s) | 196, 425, 490, 682, 1014, 1161 |
| BstMAI | GTCTC | 3 cut(s) | 180, 875, 1030 |
| BstMBI | GATC | 6 cut(s) | 193, 422, 487, 679, 1011, 1158 |
| BstMCI | CGRYCG | 1 cut(s) | 138 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 473, 482, 572, 1325 |
| BstNI | CCWGG | 1 cut(s) | 58 |
| BstNSI | RCATGY | 1 cut(s) | 853 |
| BstSCI | CCNGG | 4 cut(s) | 56, 231, 232, 317 |
| BstSFI | CTRYAG | 1 cut(s) | 1281 |
| BstV1I | GCAGC | 1 cut(s) | 224 |
| BstV2I | GAAGAC | 2 cut(s) | 151, 923 |
| BsuI | GTATCC | 1 cut(s) | 727 |
| BsuRI | GGCC | 3 cut(s) | 56, 467, 1072 |
| BtgI | CCRYGG | 1 cut(s) | 51 |
| BtgZI | GCGATG | 1 cut(s) | 4 |
| BtrI | CACGTC | 1 cut(s) | 1201 |
| BtsCI | GGATG | 2 cut(s) | 441, 443 |
| BtsIMutI | CAGTG | 1 cut(s) | 277 |
| Cac8I | GCNNGC | 4 cut(s) | 9, 483, 812, 1326 |
| CciI | TCATGA | 1 cut(s) | 763 |
| CfoI | GCGC | 1 cut(s) | 481 |
| Cfr10I | RCCGGY | 1 cut(s) | 399 |
| Cfr13I | GGNCC | 5 cut(s) | 115, 229, 455, 626, 1071 |
| Cfr9I | CCCGGG | 1 cut(s) | 232 |
| CseI | GACGC | 2 cut(s) | 13, 74 |
| Csp6I | GTAC | 5 cut(s) | 154, 535, 700, 866, 1308 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 862, 897 |
| CviAII | CATG | 3 cut(s) | 764, 850, 1277 |
| CviQI | GTAC | 5 cut(s) | 154, 535, 700, 866, 1308 |
| DdeI | CTNAG | 5 cut(s) | 90, 520, 665, 1032, 1235 |
| DpnI | GATC | 6 cut(s) | 195, 424, 489, 681, 1013, 1160 |
| DpnII | GATC | 6 cut(s) | 193, 422, 487, 679, 1011, 1158 |
| DraIII | CACNNNGTG | 1 cut(s) | 1189 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1205 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1205 |
| EaeI | YGGCCR | 2 cut(s) | 54, 465 |
| Eco130I | CCWWGG | 1 cut(s) | 1095 |
| Eco47I | GGWCC | 4 cut(s) | 115, 229, 455, 626 |
| Eco57I | CTGAAG | 3 cut(s) | 143, 689, 924 |
| Eco72I | CACGTG | 2 cut(s) | 1171, 1189 |
| Eco88I | CYCGRG | 1 cut(s) | 232 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 122 |
| EcoRII | CCWGG | 1 cut(s) | 56 |
| EcoT14I | CCWWGG | 1 cut(s) | 1095 |
| ErhI | CCWWGG | 1 cut(s) | 1095 |
| Esp3I | CGTCTC | 1 cut(s) | 875 |
| FaeI | CATG | 3 cut(s) | 767, 853, 1280 |
| FaqI | GGGAC | 3 cut(s) | 215, 759, 1211 |
| FatI | CATG | 3 cut(s) | 763, 849, 1276 |
| FbaI | TGATCA | 2 cut(s) | 193, 1011 |
| FblI | GTMKAC | 1 cut(s) | 688 |
| Fnu4HI | GCNGC | 3 cut(s) | 238, 474, 477 |
| FokI | GGATG | 2 cut(s) | 430, 448 |
| Fsp4HI | GCNGC | 3 cut(s) | 238, 474, 477 |
| FspBI | CTAG | 4 cut(s) | 482, 684, 953, 1077 |
| GlaI | GCGC | 1 cut(s) | 480 |
| GluI | GCNGC | 3 cut(s) | 238, 474, 477 |
| GsaI | CCCAGC | 1 cut(s) | 697 |
| GsuI | CTGGAG | 1 cut(s) | 265 |
| HaeII | RGCGCY | 1 cut(s) | 482 |
| HaeIII | GGCC | 3 cut(s) | 56, 467, 1072 |
| HapII | CCGG | 6 cut(s) | 227, 233, 296, 319, 362, 400 |
| HgaI | GACGC | 2 cut(s) | 13, 74 |
| HhaI | GCGC | 1 cut(s) | 481 |
| Hin1II | CATG | 3 cut(s) | 767, 853, 1280 |
| Hin6I | GCGC | 1 cut(s) | 479 |
| HinP1I | GCGC | 1 cut(s) | 479 |
| HincII | GTYRAC | 1 cut(s) | 1266 |
| HindII | GTYRAC | 1 cut(s) | 1266 |
| HpaII | CCGG | 6 cut(s) | 227, 233, 296, 319, 362, 400 |
| Hpy166II | GTNNAC | 2 cut(s) | 689, 1266 |
| Hpy188I | TCNGA | 9 cut(s) | 123, 311, 328, 381, 388, 459, 523, 553, 634 |
| Hpy188III | TCNNGA | 2 cut(s) | 362, 764 |
| Hpy8I | GTNNAC | 2 cut(s) | 689, 1266 |
| Hpy99I | CGWCG | 3 cut(s) | 68, 136, 463 |
| HpyAV | CCTTC | 6 cut(s) | 118, 128, 271, 518, 713, 1253 |
| HpyCH4III | ACNGT | 5 cut(s) | 79, 463, 630, 729, 790 |
| HpyCH4IV | ACGT | 6 cut(s) | 156, 748, 868, 1170, 1188, 1200 |
| HpyCH4V | TGCA | 7 cut(s) | 240, 255, 913, 1024, 1139, 1183, 1224 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 473, 482, 572, 1325 |
| HpyF3I | CTNAG | 5 cut(s) | 90, 520, 665, 1032, 1235 |
| HpySE526I | ACGT | 6 cut(s) | 156, 748, 868, 1170, 1188, 1200 |
| Hsp92II | CATG | 3 cut(s) | 767, 853, 1280 |
| HspAI | GCGC | 1 cut(s) | 479 |
| Kpn2I | TCCGGA | 1 cut(s) | 361 |
| Ksp22I | TGATCA | 2 cut(s) | 193, 1011 |
| Kzo9I | GATC | 6 cut(s) | 193, 422, 487, 679, 1011, 1158 |
| LmnI | GCTCC | 3 cut(s) | 303, 311, 780 |
| Lsp1109I | GCAGC | 1 cut(s) | 224 |
| LweI | GCATC | 2 cut(s) | 449, 900 |
| MaeI | CTAG | 4 cut(s) | 482, 684, 953, 1077 |
| MaeII | ACGT | 6 cut(s) | 156, 748, 868, 1170, 1188, 1200 |
| MalI | GATC | 6 cut(s) | 195, 424, 489, 681, 1013, 1160 |
| MbiI | CCGCTC | 1 cut(s) | 473 |
| MboI | GATC | 6 cut(s) | 193, 422, 487, 679, 1011, 1158 |
| MboII | GAAGA | 3 cut(s) | 151, 911, 928 |
| MhlI | GDGCHC | 1 cut(s) | 48 |
| MlsI | TGGCCA | 2 cut(s) | 56, 467 |
| MluCI | AATT | 5 cut(s) | 163, 528, 874, 1089, 1102 |
| MluNI | TGGCCA | 2 cut(s) | 56, 467 |
| MlyI | GAGTC | 5 cut(s) | 256, 281, 512, 913, 1301 |
| MmeI | TCCRAC | 3 cut(s) | 93, 413, 482 |
| MnlI | CCTC | 7 cut(s) | 34, 92, 97, 358, 406, 457, 1039 |
| Mox20I | TGGCCA | 2 cut(s) | 56, 467 |
| MroI | TCCGGA | 1 cut(s) | 361 |
| MscI | TGGCCA | 2 cut(s) | 56, 467 |
| MseI | TTAA | 4 cut(s) | 507, 656, 741, 860 |
| Msp20I | TGGCCA | 2 cut(s) | 56, 467 |
| MspI | CCGG | 6 cut(s) | 227, 233, 296, 319, 362, 400 |
| MspR9I | CCNGG | 4 cut(s) | 58, 233, 234, 319 |
| MvaI | CCWGG | 1 cut(s) | 58 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 473, 482, 572, 1325 |
| NciI | CCSGG | 3 cut(s) | 233, 234, 319 |
| NdeII | GATC | 6 cut(s) | 193, 422, 487, 679, 1011, 1158 |
| NheI | GCTAGC | 1 cut(s) | 481 |
| NlaIII | CATG | 3 cut(s) | 767, 853, 1280 |
| NlaIV | GGNNCC | 3 cut(s) | 231, 1050, 1232 |
| NmeAIII | GCCGAG | 1 cut(s) | 78 |
| NspI | RCATGY | 1 cut(s) | 853 |
| PagI | TCATGA | 1 cut(s) | 763 |
| PciI | ACATGT | 1 cut(s) | 849 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 48, 1206 |
| PfeI | GAWTC | 6 cut(s) | 128, 147, 292, 358, 990, 1239 |
| PfoI | TCCNGGA | 1 cut(s) | 317 |
| PkrI | GCNGC | 3 cut(s) | 239, 475, 478 |
| PleI | GAGTC | 5 cut(s) | 255, 281, 512, 913, 1300 |
| PmaCI | CACGTG | 2 cut(s) | 1171, 1189 |
| PmlI | CACGTG | 2 cut(s) | 1171, 1189 |
| PpsI | GAGTC | 5 cut(s) | 255, 281, 512, 913, 1300 |
| Ppu21I | YACGTR | 2 cut(s) | 1171, 1189 |
| PscI | ACATGT | 1 cut(s) | 849 |
| Psp6I | CCWGG | 1 cut(s) | 56 |
| PspCI | CACGTG | 2 cut(s) | 1171, 1189 |
| PspFI | CCCAGC | 1 cut(s) | 693 |
| PspGI | CCWGG | 1 cut(s) | 56 |
| PspN4I | GGNNCC | 3 cut(s) | 231, 1050, 1232 |
| PspPI | GGNCC | 5 cut(s) | 115, 229, 455, 626, 1071 |
| RsaI | GTAC | 5 cut(s) | 155, 536, 701, 867, 1309 |
| RsaNI | GTAC | 5 cut(s) | 154, 535, 700, 866, 1308 |
| SaqAI | TTAA | 4 cut(s) | 507, 656, 741, 860 |
| SatI | GCNGC | 3 cut(s) | 238, 474, 477 |
| Sau3AI | GATC | 6 cut(s) | 193, 422, 487, 679, 1011, 1158 |
| Sau96I | GGNCC | 5 cut(s) | 115, 229, 455, 626, 1071 |
| SchI | GAGTC | 5 cut(s) | 256, 281, 512, 913, 1301 |
| ScrFI | CCNGG | 4 cut(s) | 58, 233, 234, 319 |
| SduI | GDGCHC | 1 cut(s) | 48 |
| SfaNI | GCATC | 2 cut(s) | 449, 900 |
| SfcI | CTRYAG | 1 cut(s) | 1281 |
| SinI | GGWCC | 4 cut(s) | 115, 229, 455, 626 |
| SmaI | CCCGGG | 1 cut(s) | 234 |
| Sse9I | AATT | 5 cut(s) | 163, 528, 874, 1089, 1102 |
| SsiI | CCGC | 4 cut(s) | 138, 473, 476, 808 |
| SspMI | CTAG | 4 cut(s) | 482, 684, 953, 1077 |
| StyD4I | CCNGG | 4 cut(s) | 56, 231, 232, 317 |
| StyI | CCWWGG | 1 cut(s) | 1095 |
| TaaI | ACNGT | 5 cut(s) | 79, 463, 630, 729, 790 |
| TaiI | ACGT | 6 cut(s) | 159, 751, 871, 1173, 1191, 1203 |
| TaqI | TCGA | 5 cut(s) | 63, 131, 259, 290, 496 |
| TasI | AATT | 5 cut(s) | 163, 528, 874, 1089, 1102 |
| TauI | GCSGC | 2 cut(s) | 476, 479 |
| TfiI | GAWTC | 6 cut(s) | 128, 147, 292, 358, 990, 1239 |
| Tru1I | TTAA | 4 cut(s) | 507, 656, 741, 860 |
| Tru9I | TTAA | 4 cut(s) | 507, 656, 741, 860 |
| TscAI | CASTG | 1 cut(s) | 277 |
| TseI | GCWGC | 1 cut(s) | 237 |
| TspDTI | ATGAA | 4 cut(s) | 752, 816, 1130, 1286 |
| TspGWI | ACGGA | 2 cut(s) | 40, 216 |
| TspMI | CCCGGG | 1 cut(s) | 232 |
| TspRI | CASTG | 1 cut(s) | 277 |
| VpaK11BI | GGWCC | 4 cut(s) | 115, 229, 455, 626 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 122 |
| XapI | RAATTY | 1 cut(s) | 1089 |
| XceI | RCATGY | 1 cut(s) | 853 |
| XmaI | CCCGGG | 1 cut(s) | 232 |
| XmiI | GTMKAC | 1 cut(s) | 688 |
| XspI | CTAG | 4 cut(s) | 482, 684, 953, 1077 |