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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 574 |
| AciI | CCGC | 1 cut(s) | 151 |
| AclWI | GGATC | 3 cut(s) | 17, 247, 497 |
| AcsI | RAATTY | 1 cut(s) | 432 |
| AcuI | CTGAAG | 3 cut(s) | 32, 267, 573 |
| AcvI | CACGTG | 2 cut(s) | 515, 533 |
| AdeI | CACNNNGTG | 1 cut(s) | 533 |
| AfaI | GTAC | 1 cut(s) | 44 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 138 |
| AflII | CTTAAG | 1 cut(s) | 83 |
| AflIII | ACRYGT | 1 cut(s) | 192 |
| AgsI | TTSAA | 3 cut(s) | 184, 346, 400 |
| AjiI | CACGTC | 3 cut(s) | 212, 497, 545 |
| Alw26I | GTCTC | 1 cut(s) | 218 |
| AlwI | GGATC | 3 cut(s) | 17, 247, 497 |
| AoxI | GGCC | 1 cut(s) | 413 |
| ApoI | RAATTY | 1 cut(s) | 432 |
| AspS9I | GGNCC | 1 cut(s) | 414 |
| AsuHPI | GGTGA | 1 cut(s) | 577 |
| AxyI | CCTNAGG | 1 cut(s) | 438 |
| BanI | GGYRCC | 1 cut(s) | 574 |
| BbrPI | CACGTG | 2 cut(s) | 515, 533 |
| BbsI | GAAGAC | 1 cut(s) | 266 |
| BclI | TGATCA | 1 cut(s) | 354 |
| BcoDI | GTCTC | 1 cut(s) | 218 |
| BfaI | CTAG | 3 cut(s) | 27, 296, 411 |
| BfrI | CTTAAG | 1 cut(s) | 83 |
| BmgBI | CACGTC | 3 cut(s) | 212, 497, 545 |
| BmgT120I | GGNCC | 1 cut(s) | 414 |
| BmiI | GGNNCC | 1 cut(s) | 576 |
| BmrI | ACTGGG | 1 cut(s) | 429 |
| BmsI | GCATC | 1 cut(s) | 67 |
| BmuI | ACTGGG | 1 cut(s) | 429 |
| BpiI | GAAGAC | 1 cut(s) | 266 |
| BpmI | CTGGAG | 1 cut(s) | 335 |
| BsaAI | YACGTR | 2 cut(s) | 515, 533 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 138 |
| Bse1I | ACTGG | 2 cut(s) | 304, 424 |
| Bse21I | CCTNAGG | 1 cut(s) | 438 |
| BseGI | GGATG | 1 cut(s) | 82 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 138 |
| BseMII | CTCAG | 1 cut(s) | 429 |
| BseNI | ACTGG | 2 cut(s) | 304, 424 |
| BseYI | CCCAGC | 1 cut(s) | 36 |
| BshFI | GGCC | 1 cut(s) | 415 |
| BshNI | GGYRCC | 1 cut(s) | 574 |
| BslFI | GGGAC | 3 cut(s) | 102, 436, 555 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 138 |
| BsmAI | GTCTC | 1 cut(s) | 218 |
| BsmBI | CGTCTC | 1 cut(s) | 218 |
| BsmFI | GGGAC | 3 cut(s) | 102, 436, 555 |
| BsnI | GGCC | 1 cut(s) | 415 |
| Bsp143I | GATC | 4 cut(s) | 22, 252, 354, 502 |
| BspACI | CCGC | 1 cut(s) | 151 |
| BspANI | GGCC | 1 cut(s) | 415 |
| BspCNI | CTCAG | 1 cut(s) | 430 |
| BspHI | TCATGA | 1 cut(s) | 106 |
| BspLI | GGNNCC | 1 cut(s) | 576 |
| BspPI | GGATC | 3 cut(s) | 17, 247, 497 |
| BspT107I | GGYRCC | 1 cut(s) | 574 |
| BspTI | CTTAAG | 1 cut(s) | 83 |
| BsrI | ACTGG | 2 cut(s) | 304, 424 |
| BssMI | GATC | 4 cut(s) | 22, 252, 354, 502 |
| Bst4CI | ACNGT | 2 cut(s) | 72, 133 |
| BstAFI | CTTAAG | 1 cut(s) | 83 |
| BstBAI | YACGTR | 2 cut(s) | 515, 533 |
| BstDEI | CTNAG | 4 cut(s) | 8, 375, 438, 579 |
| BstF5I | GGATG | 1 cut(s) | 82 |
| BstKTI | GATC | 4 cut(s) | 25, 255, 357, 505 |
| BstMAI | GTCTC | 1 cut(s) | 218 |
| BstMBI | GATC | 4 cut(s) | 22, 252, 354, 502 |
| BstNSI | RCATGY | 1 cut(s) | 196 |
| BstV2I | GAAGAC | 1 cut(s) | 266 |
| Bsu36I | CCTNAGG | 1 cut(s) | 438 |
| BsuRI | GGCC | 1 cut(s) | 415 |
| BtrI | CACGTC | 3 cut(s) | 212, 497, 545 |
| BtsCI | GGATG | 1 cut(s) | 82 |
| BtsIMutI | CAGTG | 2 cut(s) | 143, 417 |
| CciI | TCATGA | 1 cut(s) | 106 |
| Cfr13I | GGNCC | 1 cut(s) | 414 |
| CseI | GACGC | 1 cut(s) | 99 |
| Csp6I | GTAC | 1 cut(s) | 43 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 205, 240 |
| CviAII | CATG | 2 cut(s) | 107, 193 |
| CviJI | RGCY | 4 cut(s) | 313, 374, 415, 443 |
| CviKI_1 | RGCY | 4 cut(s) | 313, 374, 415, 443 |
| CviQI | GTAC | 1 cut(s) | 43 |
| DdeI | CTNAG | 4 cut(s) | 8, 375, 438, 579 |
| DpnI | GATC | 4 cut(s) | 24, 254, 356, 504 |
| DpnII | GATC | 4 cut(s) | 22, 252, 354, 502 |
| DraIII | CACNNNGTG | 1 cut(s) | 533 |
| Eco57I | CTGAAG | 3 cut(s) | 32, 267, 573 |
| Eco72I | CACGTG | 2 cut(s) | 515, 533 |
| Eco81I | CCTNAGG | 1 cut(s) | 438 |
| Esp3I | CGTCTC | 1 cut(s) | 218 |
| FaeI | CATG | 2 cut(s) | 110, 196 |
| FaiI | YATR | 9 cut(s) | 18, 108, 194, 251, 293, 309, 321, 384, 450 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 77, 109 |
| FaqI | GGGAC | 3 cut(s) | 102, 436, 555 |
| FatI | CATG | 2 cut(s) | 106, 192 |
| FbaI | TGATCA | 1 cut(s) | 354 |
| FokI | GGATG | 1 cut(s) | 89 |
| FspBI | CTAG | 3 cut(s) | 27, 296, 411 |
| GsaI | CCCAGC | 1 cut(s) | 40 |
| GsuI | CTGGAG | 1 cut(s) | 335 |
| HaeIII | GGCC | 1 cut(s) | 415 |
| HgaI | GACGC | 1 cut(s) | 99 |
| Hin1II | CATG | 2 cut(s) | 110, 196 |
| HinfI | GANTC | 1 cut(s) | 262 |
| HphI | GGTGA | 1 cut(s) | 577 |
| Hpy166II | GTNNAC | 1 cut(s) | 32 |
| Hpy188I | TCNGA | 1 cut(s) | 9 |
| Hpy188III | TCNNGA | 5 cut(s) | 107, 158, 256, 397, 437 |
| Hpy8I | GTNNAC | 1 cut(s) | 32 |
| HpyAV | CCTTC | 2 cut(s) | 56, 597 |
| HpyCH4III | ACNGT | 2 cut(s) | 72, 133 |
| HpyCH4IV | ACGT | 5 cut(s) | 211, 496, 514, 532, 544 |
| HpyCH4V | TGCA | 1 cut(s) | 527 |
| HpyF3I | CTNAG | 4 cut(s) | 8, 375, 438, 579 |
| HpySE526I | ACGT | 5 cut(s) | 211, 496, 514, 532, 544 |
| Hsp92II | CATG | 2 cut(s) | 110, 196 |
| Ksp22I | TGATCA | 1 cut(s) | 354 |
| Kzo9I | GATC | 4 cut(s) | 22, 252, 354, 502 |
| LmnI | GCTCC | 2 cut(s) | 123, 204 |
| LpnPI | CCDG | 7 cut(s) | 22, 269, 299, 317, 405, 450, 584 |
| LweI | GCATC | 1 cut(s) | 67 |
| MaeI | CTAG | 3 cut(s) | 27, 296, 411 |
| MaeII | ACGT | 5 cut(s) | 211, 496, 514, 532, 544 |
| MalI | GATC | 4 cut(s) | 24, 254, 356, 504 |
| MboI | GATC | 4 cut(s) | 22, 252, 354, 502 |
| MboII | GAAGA | 2 cut(s) | 254, 271 |
| MluCI | AATT | 4 cut(s) | 217, 333, 432, 445 |
| MlyI | GAGTC | 1 cut(s) | 256 |
| MmeI | TCCRAC | 1 cut(s) | 472 |
| MnlI | CCTC | 5 cut(s) | 3, 372, 382, 433, 542 |
| MseI | TTAA | 2 cut(s) | 53, 84 |
| MspCI | CTTAAG | 1 cut(s) | 83 |
| NdeII | GATC | 4 cut(s) | 22, 252, 354, 502 |
| NlaIII | CATG | 2 cut(s) | 110, 196 |
| NlaIV | GGNNCC | 1 cut(s) | 576 |
| NspI | RCATGY | 1 cut(s) | 196 |
| PagI | TCATGA | 1 cut(s) | 106 |
| PciI | ACATGT | 1 cut(s) | 192 |
| PleI | GAGTC | 1 cut(s) | 256 |
| PmaCI | CACGTG | 2 cut(s) | 515, 533 |
| PmlI | CACGTG | 2 cut(s) | 515, 533 |
| PpsI | GAGTC | 1 cut(s) | 256 |
| Ppu21I | YACGTR | 2 cut(s) | 515, 533 |
| PscI | ACATGT | 1 cut(s) | 192 |
| PspCI | CACGTG | 2 cut(s) | 515, 533 |
| PspFI | CCCAGC | 1 cut(s) | 36 |
| PspN4I | GGNNCC | 1 cut(s) | 576 |
| PspPI | GGNCC | 1 cut(s) | 414 |
| RsaI | GTAC | 1 cut(s) | 44 |
| RsaNI | GTAC | 1 cut(s) | 43 |
| SaqAI | TTAA | 2 cut(s) | 53, 84 |
| Sau3AI | GATC | 4 cut(s) | 22, 252, 354, 502 |
| Sau96I | GGNCC | 1 cut(s) | 414 |
| SchI | GAGTC | 1 cut(s) | 256 |
| SfaNI | GCATC | 1 cut(s) | 67 |
| SmlI | CTYRAG | 1 cut(s) | 83 |
| SmoI | CTYRAG | 1 cut(s) | 83 |
| Sse9I | AATT | 4 cut(s) | 217, 333, 432, 445 |
| SsiI | CCGC | 1 cut(s) | 151 |
| SspMI | CTAG | 3 cut(s) | 27, 296, 411 |
| TaaI | ACNGT | 2 cut(s) | 72, 133 |
| TaiI | ACGT | 5 cut(s) | 214, 499, 517, 535, 547 |
| TasI | AATT | 4 cut(s) | 217, 333, 432, 445 |
| Tru1I | TTAA | 2 cut(s) | 53, 84 |
| Tru9I | TTAA | 2 cut(s) | 53, 84 |
| TscAI | CASTG | 2 cut(s) | 143, 424 |
| TspDTI | ATGAA | 3 cut(s) | 95, 159, 473 |
| TspRI | CASTG | 2 cut(s) | 143, 424 |
| Vha464I | CTTAAG | 1 cut(s) | 83 |
| XapI | RAATTY | 1 cut(s) | 432 |
| XceI | RCATGY | 1 cut(s) | 196 |
| XspI | CTAG | 3 cut(s) | 27, 296, 411 |