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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 630 |
| AciI | CCGC | 1 cut(s) | 250 |
| AclWI | GGATC | 2 cut(s) | 346, 596 |
| AcsI | RAATTY | 3 cut(s) | 23, 316, 531 |
| AcuI | CTGAAG | 1 cut(s) | 167 |
| AfaI | GTAC | 1 cut(s) | 56 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 64, 237 |
| AgsI | TTSAA | 5 cut(s) | 154, 283, 384, 445, 499 |
| AjiI | CACGTC | 1 cut(s) | 596 |
| AjnI | CCWGG | 1 cut(s) | 509 |
| AluBI | AGCT | 1 cut(s) | 451 |
| AluI | AGCT | 1 cut(s) | 451 |
| AlwI | GGATC | 2 cut(s) | 346, 596 |
| ApoI | RAATTY | 3 cut(s) | 23, 316, 531 |
| AspS9I | GGNCC | 1 cut(s) | 8 |
| AvaII | GGWCC | 1 cut(s) | 8 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 38, 71 |
| BbsI | GAAGAC | 2 cut(s) | 161, 365 |
| BciT130I | CCWGG | 1 cut(s) | 511 |
| BclI | TGATCA | 1 cut(s) | 453 |
| BfaI | CTAG | 2 cut(s) | 395, 515 |
| Bme1390I | CCNGG | 1 cut(s) | 511 |
| Bme18I | GGWCC | 1 cut(s) | 8 |
| BmgBI | CACGTC | 1 cut(s) | 596 |
| BmgT120I | GGNCC | 1 cut(s) | 8 |
| BmrFI | CCNGG | 1 cut(s) | 511 |
| BmsI | GCATC | 2 cut(s) | 166, 309 |
| BpiI | GAAGAC | 2 cut(s) | 161, 365 |
| BpmI | CTGGAG | 1 cut(s) | 434 |
| BpuEI | CTTGAG | 1 cut(s) | 71 |
| BsaJI | CCNNGG | 1 cut(s) | 537 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 64, 237 |
| Bse1I | ACTGG | 1 cut(s) | 403 |
| BseBI | CCWGG | 1 cut(s) | 511 |
| BseDI | CCNNGG | 1 cut(s) | 537 |
| BseGI | GGATG | 1 cut(s) | 181 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 64, 237 |
| BseMII | CTCAG | 2 cut(s) | 54, 465 |
| BseNI | ACTGG | 1 cut(s) | 403 |
| BsgI | GTGCAG | 1 cut(s) | 618 |
| BslFI | GGGAC | 2 cut(s) | 201, 535 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 64, 237 |
| BsmFI | GGGAC | 2 cut(s) | 201, 535 |
| Bsp143I | GATC | 3 cut(s) | 351, 453, 601 |
| BspACI | CCGC | 1 cut(s) | 250 |
| BspCNI | CTCAG | 2 cut(s) | 53, 466 |
| BspHI | TCATGA | 1 cut(s) | 205 |
| BspPI | GGATC | 2 cut(s) | 346, 596 |
| BsrI | ACTGG | 1 cut(s) | 403 |
| BssECI | CCNNGG | 1 cut(s) | 537 |
| BssMI | GATC | 3 cut(s) | 351, 453, 601 |
| Bst2UI | CCWGG | 1 cut(s) | 511 |
| Bst4CI | ACNGT | 3 cut(s) | 62, 85, 232 |
| BstC8I | GCNNGC | 1 cut(s) | 254 |
| BstDEI | CTNAG | 2 cut(s) | 40, 474 |
| BstF5I | GGATG | 1 cut(s) | 181 |
| BstKTI | GATC | 3 cut(s) | 354, 456, 604 |
| BstMBI | GATC | 3 cut(s) | 351, 453, 601 |
| BstNI | CCWGG | 1 cut(s) | 511 |
| BstNSI | RCATGY | 1 cut(s) | 312 |
| BstSCI | CCNGG | 1 cut(s) | 509 |
| BstV2I | GAAGAC | 2 cut(s) | 161, 365 |
| BstX2I | RGATCY | 1 cut(s) | 601 |
| BstYI | RGATCY | 1 cut(s) | 601 |
| BtrI | CACGTC | 1 cut(s) | 596 |
| BtsCI | GGATG | 1 cut(s) | 181 |
| BtsIMutI | CAGTG | 1 cut(s) | 242 |
| Cac8I | GCNNGC | 1 cut(s) | 254 |
| CciI | TCATGA | 1 cut(s) | 205 |
| Cfr13I | GGNCC | 1 cut(s) | 8 |
| Csp6I | GTAC | 1 cut(s) | 55 |
| CviAII | CATG | 2 cut(s) | 206, 309 |
| CviJI | RGCY | 6 cut(s) | 5, 412, 451, 473, 514, 542 |
| CviKI_1 | RGCY | 6 cut(s) | 5, 412, 451, 473, 514, 542 |
| CviQI | GTAC | 1 cut(s) | 55 |
| DdeI | CTNAG | 2 cut(s) | 40, 474 |
| DpnI | GATC | 3 cut(s) | 353, 455, 603 |
| DpnII | GATC | 3 cut(s) | 351, 453, 601 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 630 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 630 |
| Eco47I | GGWCC | 1 cut(s) | 8 |
| Eco57I | CTGAAG | 1 cut(s) | 167 |
| EcoRII | CCWGG | 1 cut(s) | 509 |
| FaeI | CATG | 2 cut(s) | 209, 312 |
| FaqI | GGGAC | 2 cut(s) | 201, 535 |
| FatI | CATG | 2 cut(s) | 205, 308 |
| FbaI | TGATCA | 1 cut(s) | 453 |
| FokI | GGATG | 1 cut(s) | 188 |
| FspBI | CTAG | 2 cut(s) | 395, 515 |
| GsuI | CTGGAG | 1 cut(s) | 434 |
| Hin1II | CATG | 2 cut(s) | 209, 312 |
| HinfI | GANTC | 3 cut(s) | 38, 361, 432 |
| Hpy188I | TCNGA | 3 cut(s) | 43, 73, 538 |
| Hpy188III | TCNNGA | 2 cut(s) | 206, 355 |
| HpyAV | CCTTC | 1 cut(s) | 191 |
| HpyCH4III | ACNGT | 3 cut(s) | 62, 85, 232 |
| HpyCH4IV | ACGT | 3 cut(s) | 190, 595, 625 |
| HpyCH4V | TGCA | 2 cut(s) | 466, 599 |
| HpyF3I | CTNAG | 2 cut(s) | 40, 474 |
| HpySE526I | ACGT | 3 cut(s) | 190, 595, 625 |
| Hsp92II | CATG | 2 cut(s) | 209, 312 |
| Ksp22I | TGATCA | 1 cut(s) | 453 |
| Kzo9I | GATC | 3 cut(s) | 351, 453, 601 |
| LmnI | GCTCC | 1 cut(s) | 222 |
| LpnPI | CCDG | 8 cut(s) | 33, 170, 234, 368, 398, 416, 496, 523 |
| LweI | GCATC | 2 cut(s) | 166, 309 |
| MaeI | CTAG | 2 cut(s) | 395, 515 |
| MaeII | ACGT | 3 cut(s) | 190, 595, 625 |
| MaeIII | GTNAC | 1 cut(s) | 294 |
| MalI | GATC | 3 cut(s) | 353, 455, 603 |
| MboI | GATC | 3 cut(s) | 351, 453, 601 |
| MboII | GAAGA | 3 cut(s) | 166, 353, 370 |
| MflI | RGATCY | 1 cut(s) | 601 |
| MluCI | AATT | 5 cut(s) | 23, 316, 387, 531, 544 |
| MlyI | GAGTC | 2 cut(s) | 32, 355 |
| MmeI | TCCRAC | 2 cut(s) | 35, 571 |
| MnlI | CCTC | 3 cut(s) | 471, 481, 532 |
| MspR9I | CCNGG | 1 cut(s) | 511 |
| MvaI | CCWGG | 1 cut(s) | 511 |
| NdeII | GATC | 3 cut(s) | 351, 453, 601 |
| NlaIII | CATG | 2 cut(s) | 209, 312 |
| NspI | RCATGY | 1 cut(s) | 312 |
| PagI | TCATGA | 1 cut(s) | 205 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 631 |
| PfeI | GAWTC | 1 cut(s) | 432 |
| PleI | GAGTC | 2 cut(s) | 32, 355 |
| PpsI | GAGTC | 2 cut(s) | 32, 355 |
| Psp6I | CCWGG | 1 cut(s) | 509 |
| PspGI | CCWGG | 1 cut(s) | 509 |
| PspPI | GGNCC | 1 cut(s) | 8 |
| PsuI | RGATCY | 1 cut(s) | 601 |
| RsaI | GTAC | 1 cut(s) | 56 |
| RsaNI | GTAC | 1 cut(s) | 55 |
| Sau3AI | GATC | 3 cut(s) | 351, 453, 601 |
| Sau96I | GGNCC | 1 cut(s) | 8 |
| SchI | GAGTC | 2 cut(s) | 32, 355 |
| ScrFI | CCNGG | 1 cut(s) | 511 |
| SetI | ASST | 8 cut(s) | 22, 193, 453, 462, 492, 565, 598, 628 |
| SfaNI | GCATC | 2 cut(s) | 166, 309 |
| SinI | GGWCC | 1 cut(s) | 8 |
| SmlI | CTYRAG | 1 cut(s) | 50 |
| SmoI | CTYRAG | 1 cut(s) | 50 |
| Sse9I | AATT | 5 cut(s) | 23, 316, 387, 531, 544 |
| SsiI | CCGC | 1 cut(s) | 250 |
| SspMI | CTAG | 2 cut(s) | 395, 515 |
| StyD4I | CCNGG | 1 cut(s) | 509 |
| TaaI | ACNGT | 3 cut(s) | 62, 85, 232 |
| TaiI | ACGT | 3 cut(s) | 193, 598, 628 |
| TaqI | TCGA | 1 cut(s) | 16 |
| TasI | AATT | 5 cut(s) | 23, 316, 387, 531, 544 |
| TfiI | GAWTC | 1 cut(s) | 432 |
| TscAI | CASTG | 1 cut(s) | 242 |
| TspDTI | ATGAA | 4 cut(s) | 150, 194, 258, 345 |
| TspGWI | ACGGA | 1 cut(s) | 60 |
| TspRI | CASTG | 1 cut(s) | 242 |
| VpaK11BI | GGWCC | 1 cut(s) | 8 |
| XapI | RAATTY | 3 cut(s) | 23, 316, 531 |
| XceI | RCATGY | 1 cut(s) | 312 |
| XspI | CTAG | 2 cut(s) | 395, 515 |