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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 395 |
| AclWI | GGATC | 1 cut(s) | 2 |
| AcoI | YGGCCR | 1 cut(s) | 225 |
| AcsI | RAATTY | 2 cut(s) | 23, 528 |
| AfaI | GTAC | 1 cut(s) | 56 |
| AfeI | AGCGCT | 1 cut(s) | 384 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 64, 223, 234 |
| AflII | CTTAAG | 2 cut(s) | 50, 182 |
| AgsI | TTSAA | 4 cut(s) | 154, 280, 442, 496 |
| AjiI | CACGTC | 1 cut(s) | 308 |
| AluBI | AGCT | 1 cut(s) | 448 |
| AluI | AGCT | 1 cut(s) | 448 |
| Alw26I | GTCTC | 2 cut(s) | 314, 469 |
| AlwI | GGATC | 1 cut(s) | 2 |
| Ama87I | CYCGRG | 1 cut(s) | 533 |
| Aor51HI | AGCGCT | 1 cut(s) | 384 |
| AoxI | GGCC | 1 cut(s) | 225 |
| ApoI | RAATTY | 2 cut(s) | 23, 528 |
| AspLEI | GCGC | 2 cut(s) | 297, 385 |
| AspS9I | GGNCC | 2 cut(s) | 268, 397 |
| AvaI | CYCGRG | 1 cut(s) | 533 |
| AvaII | GGWCC | 2 cut(s) | 268, 397 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 38, 71 |
| BceAI | ACGGC | 1 cut(s) | 212 |
| BclI | TGATCA | 1 cut(s) | 450 |
| BcoDI | GTCTC | 2 cut(s) | 314, 469 |
| BfaI | CTAG | 1 cut(s) | 392 |
| BfoI | RGCGCY | 1 cut(s) | 386 |
| BfrI | CTTAAG | 2 cut(s) | 50, 182 |
| Bme18I | GGWCC | 2 cut(s) | 268, 397 |
| BmeT110I | CYCGRG | 1 cut(s) | 533 |
| BmgBI | CACGTC | 1 cut(s) | 308 |
| BmgT120I | GGNCC | 2 cut(s) | 268, 397 |
| BmiI | GGNNCC | 1 cut(s) | 269 |
| BmrI | ACTGGG | 1 cut(s) | 525 |
| BmsI | GCATC | 1 cut(s) | 166 |
| BmuI | ACTGGG | 1 cut(s) | 525 |
| BpmI | CTGGAG | 1 cut(s) | 431 |
| BsaJI | CCNNGG | 1 cut(s) | 534 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 64, 223, 234 |
| Bse1I | ACTGG | 3 cut(s) | 228, 400, 520 |
| Bse3DI | GCAATG | 1 cut(s) | 508 |
| BseDI | CCNNGG | 1 cut(s) | 534 |
| BseGI | GGATG | 1 cut(s) | 181 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 64, 223, 234 |
| BseMI | GCAATG | 1 cut(s) | 508 |
| BseMII | CTCAG | 1 cut(s) | 54 |
| BseNI | ACTGG | 3 cut(s) | 228, 400, 520 |
| BshFI | GGCC | 1 cut(s) | 227 |
| BsiHKCI | CYCGRG | 1 cut(s) | 533 |
| BslFI | GGGAC | 2 cut(s) | 201, 532 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 64, 223, 234 |
| BsmAI | GTCTC | 2 cut(s) | 314, 469 |
| BsmBI | CGTCTC | 1 cut(s) | 314 |
| BsmFI | GGGAC | 2 cut(s) | 201, 532 |
| BsnI | GGCC | 1 cut(s) | 227 |
| BsoBI | CYCGRG | 1 cut(s) | 533 |
| Bsp143I | GATC | 2 cut(s) | 7, 450 |
| BspACI | CCGC | 1 cut(s) | 395 |
| BspANI | GGCC | 1 cut(s) | 227 |
| BspCNI | CTCAG | 1 cut(s) | 53 |
| BspHI | TCATGA | 1 cut(s) | 205 |
| BspLI | GGNNCC | 1 cut(s) | 269 |
| BspPI | GGATC | 1 cut(s) | 2 |
| BspTI | CTTAAG | 2 cut(s) | 50, 182 |
| BsrDI | GCAATG | 1 cut(s) | 508 |
| BsrI | ACTGG | 3 cut(s) | 228, 400, 520 |
| BssECI | CCNNGG | 1 cut(s) | 534 |
| BssMI | GATC | 2 cut(s) | 7, 450 |
| Bst4CI | ACNGT | 1 cut(s) | 171 |
| BstAFI | CTTAAG | 2 cut(s) | 50, 182 |
| BstDEI | CTNAG | 1 cut(s) | 40 |
| BstF5I | GGATG | 1 cut(s) | 181 |
| BstH2I | RGCGCY | 1 cut(s) | 386 |
| BstHHI | GCGC | 2 cut(s) | 297, 385 |
| BstKTI | GATC | 2 cut(s) | 10, 453 |
| BstMAI | GTCTC | 2 cut(s) | 314, 469 |
| BstMBI | GATC | 2 cut(s) | 7, 450 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 301 |
| BsuRI | GGCC | 1 cut(s) | 227 |
| BtrI | CACGTC | 1 cut(s) | 308 |
| BtsCI | GGATG | 1 cut(s) | 181 |
| BtsIMutI | CAGTG | 1 cut(s) | 513 |
| CciI | TCATGA | 1 cut(s) | 205 |
| CfoI | GCGC | 2 cut(s) | 297, 385 |
| Cfr13I | GGNCC | 2 cut(s) | 268, 397 |
| Csp6I | GTAC | 1 cut(s) | 55 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 301, 336 |
| CviAII | CATG | 3 cut(s) | 206, 272, 508 |
| CviJI | RGCY | 7 cut(s) | 5, 227, 304, 409, 448, 456, 539 |
| CviKI_1 | RGCY | 7 cut(s) | 5, 227, 304, 409, 448, 456, 539 |
| CviQI | GTAC | 1 cut(s) | 55 |
| DdeI | CTNAG | 1 cut(s) | 40 |
| DpnI | GATC | 2 cut(s) | 9, 452 |
| DpnII | GATC | 2 cut(s) | 7, 450 |
| EaeI | YGGCCR | 1 cut(s) | 225 |
| Eco47I | GGWCC | 2 cut(s) | 268, 397 |
| Eco47III | AGCGCT | 1 cut(s) | 384 |
| Eco88I | CYCGRG | 1 cut(s) | 533 |
| Esp3I | CGTCTC | 1 cut(s) | 314 |
| FaeI | CATG | 3 cut(s) | 209, 275, 511 |
| FaqI | GGGAC | 2 cut(s) | 201, 532 |
| FatI | CATG | 3 cut(s) | 205, 271, 507 |
| FbaI | TGATCA | 1 cut(s) | 450 |
| FokI | GGATG | 1 cut(s) | 188 |
| FspBI | CTAG | 1 cut(s) | 392 |
| GlaI | GCGC | 2 cut(s) | 296, 384 |
| GsuI | CTGGAG | 1 cut(s) | 431 |
| HaeII | RGCGCY | 1 cut(s) | 386 |
| HaeIII | GGCC | 1 cut(s) | 227 |
| HhaI | GCGC | 2 cut(s) | 297, 385 |
| Hin1II | CATG | 3 cut(s) | 209, 275, 511 |
| Hin6I | GCGC | 2 cut(s) | 295, 383 |
| HinP1I | GCGC | 2 cut(s) | 295, 383 |
| HinfI | GANTC | 4 cut(s) | 38, 243, 358, 429 |
| Hpy188I | TCNGA | 2 cut(s) | 43, 73 |
| Hpy188III | TCNNGA | 3 cut(s) | 206, 493, 533 |
| HpyAV | CCTTC | 3 cut(s) | 38, 318, 448 |
| HpyCH4III | ACNGT | 1 cut(s) | 171 |
| HpyCH4IV | ACGT | 2 cut(s) | 190, 307 |
| HpyCH4V | TGCA | 1 cut(s) | 463 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 301 |
| HpyF3I | CTNAG | 1 cut(s) | 40 |
| HpySE526I | ACGT | 2 cut(s) | 190, 307 |
| Hsp92II | CATG | 3 cut(s) | 209, 275, 511 |
| HspAI | GCGC | 2 cut(s) | 295, 383 |
| Ksp22I | TGATCA | 1 cut(s) | 450 |
| Kzo9I | GATC | 2 cut(s) | 7, 450 |
| LmnI | GCTCC | 1 cut(s) | 219 |
| LpnPI | CCDG | 6 cut(s) | 33, 209, 231, 395, 413, 501 |
| LweI | GCATC | 1 cut(s) | 166 |
| MaeI | CTAG | 1 cut(s) | 392 |
| MaeII | ACGT | 2 cut(s) | 190, 307 |
| MalI | GATC | 2 cut(s) | 9, 452 |
| MboI | GATC | 2 cut(s) | 7, 450 |
| MboII | GAAGA | 2 cut(s) | 166, 350 |
| MluCI | AATT | 4 cut(s) | 23, 313, 528, 541 |
| MlyI | GAGTC | 2 cut(s) | 32, 352 |
| MmeI | TCCRAC | 1 cut(s) | 35 |
| MnlI | CCTC | 3 cut(s) | 257, 478, 529 |
| MseI | TTAA | 2 cut(s) | 51, 183 |
| MspCI | CTTAAG | 2 cut(s) | 50, 182 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 301 |
| NdeII | GATC | 2 cut(s) | 7, 450 |
| NlaIII | CATG | 3 cut(s) | 209, 275, 511 |
| NlaIV | GGNNCC | 1 cut(s) | 269 |
| PagI | TCATGA | 1 cut(s) | 205 |
| PfeI | GAWTC | 2 cut(s) | 243, 429 |
| PleI | GAGTC | 2 cut(s) | 32, 352 |
| PpsI | GAGTC | 2 cut(s) | 32, 352 |
| PspN4I | GGNNCC | 1 cut(s) | 269 |
| PspPI | GGNCC | 2 cut(s) | 268, 397 |
| RsaI | GTAC | 1 cut(s) | 56 |
| RsaNI | GTAC | 1 cut(s) | 55 |
| SaqAI | TTAA | 2 cut(s) | 51, 183 |
| Sau3AI | GATC | 2 cut(s) | 7, 450 |
| Sau96I | GGNCC | 2 cut(s) | 268, 397 |
| SchI | GAGTC | 2 cut(s) | 32, 352 |
| SetI | ASST | 7 cut(s) | 22, 193, 310, 440, 450, 489, 562 |
| SfaNI | GCATC | 1 cut(s) | 166 |
| SinI | GGWCC | 2 cut(s) | 268, 397 |
| SmlI | CTYRAG | 2 cut(s) | 50, 182 |
| SmoI | CTYRAG | 2 cut(s) | 50, 182 |
| Sse9I | AATT | 4 cut(s) | 23, 313, 528, 541 |
| SsiI | CCGC | 1 cut(s) | 395 |
| SspMI | CTAG | 1 cut(s) | 392 |
| TaaI | ACNGT | 1 cut(s) | 171 |
| TaiI | ACGT | 2 cut(s) | 193, 310 |
| TaqI | TCGA | 1 cut(s) | 16 |
| TasI | AATT | 4 cut(s) | 23, 313, 528, 541 |
| TfiI | GAWTC | 2 cut(s) | 243, 429 |
| Tru1I | TTAA | 2 cut(s) | 51, 183 |
| Tru9I | TTAA | 2 cut(s) | 51, 183 |
| TscAI | CASTG | 1 cut(s) | 520 |
| TspDTI | ATGAA | 2 cut(s) | 150, 194 |
| TspRI | CASTG | 1 cut(s) | 520 |
| Vha464I | CTTAAG | 2 cut(s) | 50, 182 |
| VpaK11BI | GGWCC | 2 cut(s) | 268, 397 |
| XapI | RAATTY | 2 cut(s) | 23, 528 |
| XspI | CTAG | 1 cut(s) | 392 |