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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 2 cut(s) | 675, 950 |
| AccB1I | GGYRCC | 1 cut(s) | 766 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 711 |
| AciI | CCGC | 1 cut(s) | 295 |
| AclWI | GGATC | 4 cut(s) | 2, 194, 391, 641 |
| AcsI | RAATTY | 2 cut(s) | 361, 576 |
| AcuI | CTGAAG | 2 cut(s) | 411, 765 |
| AcvI | CACGTG | 1 cut(s) | 659 |
| AfaI | GTAC | 2 cut(s) | 56, 845 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 64, 282, 711 |
| AflII | CTTAAG | 1 cut(s) | 227 |
| AflIII | ACRYGT | 1 cut(s) | 336 |
| AgsI | TTSAA | 2 cut(s) | 328, 490 |
| AjiI | CACGTC | 2 cut(s) | 356, 641 |
| AjnI | CCWGG | 1 cut(s) | 554 |
| AluBI | AGCT | 1 cut(s) | 496 |
| AluI | AGCT | 1 cut(s) | 496 |
| Alw26I | GTCTC | 1 cut(s) | 93 |
| AlwI | GGATC | 4 cut(s) | 2, 194, 391, 641 |
| AoxI | GGCC | 5 cut(s) | 557, 688, 698, 733, 937 |
| ApeKI | GCWGC | 1 cut(s) | 875 |
| ApoI | RAATTY | 2 cut(s) | 361, 576 |
| AseI | ATTAAT | 1 cut(s) | 249 |
| AspLEI | GCGC | 3 cut(s) | 345, 717, 731 |
| AspS9I | GGNCC | 4 cut(s) | 146, 688, 698, 734 |
| AsuHPI | GGTGA | 1 cut(s) | 172 |
| AvaII | GGWCC | 1 cut(s) | 146 |
| AxyI | CCTNAGG | 1 cut(s) | 582 |
| BaeGI | GKGCMC | 1 cut(s) | 769 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 38, 71 |
| BanI | GGYRCC | 1 cut(s) | 766 |
| BbrPI | CACGTG | 1 cut(s) | 659 |
| BbsI | GAAGAC | 1 cut(s) | 410 |
| BbvI | GCAGC | 1 cut(s) | 887 |
| BccI | CCATC | 3 cut(s) | 122, 137, 716 |
| BceAI | ACGGC | 1 cut(s) | 675 |
| BciT130I | CCWGG | 1 cut(s) | 556 |
| BclI | TGATCA | 1 cut(s) | 498 |
| BcoDI | GTCTC | 1 cut(s) | 93 |
| BfaI | CTAG | 3 cut(s) | 204, 440, 738 |
| BfmI | CTRYAG | 1 cut(s) | 817 |
| BfoI | RGCGCY | 1 cut(s) | 732 |
| BfrI | CTTAAG | 1 cut(s) | 227 |
| BisI | GCNGC | 1 cut(s) | 876 |
| BlsI | GCNGC | 1 cut(s) | 877 |
| Bme1390I | CCNGG | 1 cut(s) | 556 |
| Bme18I | GGWCC | 1 cut(s) | 146 |
| BmgBI | CACGTC | 2 cut(s) | 356, 641 |
| BmgT120I | GGNCC | 4 cut(s) | 146, 688, 698, 734 |
| BmiI | GGNNCC | 1 cut(s) | 768 |
| BmrFI | CCNGG | 1 cut(s) | 556 |
| BmsI | GCATC | 1 cut(s) | 211 |
| BpiI | GAAGAC | 1 cut(s) | 410 |
| BpmI | CTGGAG | 1 cut(s) | 479 |
| BpuEI | CTTGAG | 1 cut(s) | 71 |
| BsaAI | YACGTR | 1 cut(s) | 659 |
| BsaJI | CCNNGG | 1 cut(s) | 691 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 64, 282, 711 |
| Bse1I | ACTGG | 1 cut(s) | 448 |
| Bse21I | CCTNAGG | 1 cut(s) | 582 |
| Bse3DI | GCAATG | 1 cut(s) | 811 |
| BseBI | CCWGG | 1 cut(s) | 556 |
| BseDI | CCNNGG | 1 cut(s) | 691 |
| BseGI | GGATG | 1 cut(s) | 226 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 64, 282, 711 |
| BseMI | GCAATG | 1 cut(s) | 811 |
| BseMII | CTCAG | 5 cut(s) | 12, 54, 510, 573, 1010 |
| BseNI | ACTGG | 1 cut(s) | 448 |
| BseSI | GKGCMC | 1 cut(s) | 769 |
| BseXI | GCAGC | 1 cut(s) | 887 |
| BshFI | GGCC | 5 cut(s) | 559, 690, 700, 735, 939 |
| BshNI | GGYRCC | 1 cut(s) | 766 |
| BslFI | GGGAC | 2 cut(s) | 246, 681 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 64, 282, 711 |
| BsmAI | GTCTC | 1 cut(s) | 93 |
| BsmFI | GGGAC | 2 cut(s) | 246, 681 |
| BsnI | GGCC | 5 cut(s) | 559, 690, 700, 735, 939 |
| Bsp1286I | GDGCHC | 1 cut(s) | 769 |
| Bsp143I | GATC | 5 cut(s) | 7, 199, 396, 498, 646 |
| BspACI | CCGC | 1 cut(s) | 295 |
| BspANI | GGCC | 5 cut(s) | 559, 690, 700, 735, 939 |
| BspCNI | CTCAG | 5 cut(s) | 13, 53, 511, 574, 1009 |
| BspLI | GGNNCC | 1 cut(s) | 768 |
| BspPI | GGATC | 4 cut(s) | 2, 194, 391, 641 |
| BspT107I | GGYRCC | 1 cut(s) | 766 |
| BspTI | CTTAAG | 1 cut(s) | 227 |
| BsrDI | GCAATG | 1 cut(s) | 811 |
| BsrI | ACTGG | 1 cut(s) | 448 |
| BssECI | CCNNGG | 1 cut(s) | 691 |
| BssMI | GATC | 5 cut(s) | 7, 199, 396, 498, 646 |
| Bst2UI | CCWGG | 1 cut(s) | 556 |
| Bst4CI | ACNGT | 5 cut(s) | 62, 150, 216, 277, 608 |
| BstAFI | CTTAAG | 1 cut(s) | 227 |
| BstBAI | YACGTR | 1 cut(s) | 659 |
| BstC8I | GCNNGC | 3 cut(s) | 299, 733, 862 |
| BstDEI | CTNAG | 6 cut(s) | 21, 40, 519, 582, 771, 996 |
| BstDSI | CCRYGG | 1 cut(s) | 691 |
| BstF5I | GGATG | 1 cut(s) | 226 |
| BstH2I | RGCGCY | 1 cut(s) | 732 |
| BstHHI | GCGC | 3 cut(s) | 345, 717, 731 |
| BstKTI | GATC | 5 cut(s) | 10, 202, 399, 501, 649 |
| BstMAI | GTCTC | 1 cut(s) | 93 |
| BstMBI | GATC | 5 cut(s) | 7, 199, 396, 498, 646 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 92, 861 |
| BstNI | CCWGG | 1 cut(s) | 556 |
| BstNSI | RCATGY | 1 cut(s) | 340 |
| BstSCI | CCNGG | 1 cut(s) | 554 |
| BstSFI | CTRYAG | 1 cut(s) | 817 |
| BstSLI | GKGCMC | 1 cut(s) | 769 |
| BstV1I | GCAGC | 1 cut(s) | 887 |
| BstV2I | GAAGAC | 1 cut(s) | 410 |
| Bsu36I | CCTNAGG | 1 cut(s) | 582 |
| BsuRI | GGCC | 5 cut(s) | 559, 690, 700, 735, 939 |
| BtgI | CCRYGG | 1 cut(s) | 691 |
| BtrI | CACGTC | 2 cut(s) | 356, 641 |
| BtsCI | GGATG | 1 cut(s) | 226 |
| BtsI | GCAGTG | 1 cut(s) | 105 |
| BtsIMutI | CAGTG | 3 cut(s) | 105, 126, 287 |
| Cac8I | GCNNGC | 3 cut(s) | 299, 733, 862 |
| CfoI | GCGC | 3 cut(s) | 345, 717, 731 |
| Cfr13I | GGNCC | 4 cut(s) | 146, 688, 698, 734 |
| Csp6I | GTAC | 2 cut(s) | 55, 844 |
| CviAII | CATG | 5 cut(s) | 337, 671, 746, 813, 941 |
| CviQI | GTAC | 2 cut(s) | 55, 844 |
| DdeI | CTNAG | 6 cut(s) | 21, 40, 519, 582, 771, 996 |
| DpnI | GATC | 5 cut(s) | 9, 201, 398, 500, 648 |
| DpnII | GATC | 5 cut(s) | 7, 199, 396, 498, 646 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 675, 950 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 675, 950 |
| Eco147I | AGGCCT | 1 cut(s) | 559 |
| Eco47I | GGWCC | 1 cut(s) | 146 |
| Eco57I | CTGAAG | 2 cut(s) | 411, 765 |
| Eco72I | CACGTG | 1 cut(s) | 659 |
| Eco81I | CCTNAGG | 1 cut(s) | 582 |
| EcoO109I | RGGNCCY | 1 cut(s) | 698 |
| EcoRII | CCWGG | 1 cut(s) | 554 |
| FaeI | CATG | 5 cut(s) | 340, 674, 749, 816, 944 |
| FaqI | GGGAC | 2 cut(s) | 246, 681 |
| FatI | CATG | 5 cut(s) | 336, 670, 745, 812, 940 |
| FbaI | TGATCA | 1 cut(s) | 498 |
| Fnu4HI | GCNGC | 1 cut(s) | 876 |
| FokI | GGATG | 1 cut(s) | 233 |
| Fsp4HI | GCNGC | 1 cut(s) | 876 |
| FspBI | CTAG | 3 cut(s) | 204, 440, 738 |
| GlaI | GCGC | 3 cut(s) | 344, 716, 730 |
| GluI | GCNGC | 1 cut(s) | 876 |
| GsuI | CTGGAG | 1 cut(s) | 479 |
| HaeII | RGCGCY | 1 cut(s) | 732 |
| HaeIII | GGCC | 5 cut(s) | 559, 690, 700, 735, 939 |
| HhaI | GCGC | 3 cut(s) | 345, 717, 731 |
| Hin1II | CATG | 5 cut(s) | 340, 674, 749, 816, 944 |
| Hin6I | GCGC | 3 cut(s) | 343, 715, 729 |
| HinP1I | GCGC | 3 cut(s) | 343, 715, 729 |
| HincII | GTYRAC | 2 cut(s) | 955, 1002 |
| HindII | GTYRAC | 2 cut(s) | 955, 1002 |
| HinfI | GANTC | 5 cut(s) | 38, 406, 477, 828, 899 |
| HphI | GGTGA | 1 cut(s) | 172 |
| Hpy166II | GTNNAC | 3 cut(s) | 604, 955, 1002 |
| Hpy188I | TCNGA | 3 cut(s) | 43, 73, 154 |
| Hpy188III | TCNNGA | 3 cut(s) | 35, 400, 581 |
| Hpy8I | GTNNAC | 3 cut(s) | 604, 955, 1002 |
| HpyAV | CCTTC | 3 cut(s) | 496, 789, 926 |
| HpyCH4III | ACNGT | 5 cut(s) | 62, 150, 216, 277, 608 |
| HpyCH4IV | ACGT | 4 cut(s) | 235, 355, 640, 658 |
| HpyCH4V | TGCA | 3 cut(s) | 626, 760, 968 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 92, 861 |
| HpyF3I | CTNAG | 6 cut(s) | 21, 40, 519, 582, 771, 996 |
| HpySE526I | ACGT | 4 cut(s) | 235, 355, 640, 658 |
| Hsp92II | CATG | 5 cut(s) | 340, 674, 749, 816, 944 |
| HspAI | GCGC | 3 cut(s) | 343, 715, 729 |
| Ksp22I | TGATCA | 1 cut(s) | 498 |
| Kzo9I | GATC | 5 cut(s) | 7, 199, 396, 498, 646 |
| LmnI | GCTCC | 1 cut(s) | 267 |
| Lsp1109I | GCAGC | 1 cut(s) | 887 |
| LweI | GCATC | 1 cut(s) | 211 |
| MaeI | CTAG | 3 cut(s) | 204, 440, 738 |
| MaeII | ACGT | 4 cut(s) | 235, 355, 640, 658 |
| MalI | GATC | 5 cut(s) | 9, 201, 398, 500, 648 |
| MboI | GATC | 5 cut(s) | 7, 199, 396, 498, 646 |
| MboII | GAAGA | 3 cut(s) | 398, 415, 941 |
| MfeI | CAATTG | 1 cut(s) | 963 |
| MhlI | GDGCHC | 1 cut(s) | 769 |
| MluCI | AATT | 5 cut(s) | 361, 576, 589, 880, 963 |
| MlyI | GAGTC | 4 cut(s) | 32, 400, 837, 908 |
| MmeI | TCCRAC | 2 cut(s) | 35, 544 |
| MnlI | CCTC | 9 cut(s) | 180, 516, 526, 577, 689, 711, 907, 929, 968 |
| MseI | TTAA | 5 cut(s) | 176, 228, 249, 542, 975 |
| MspCI | CTTAAG | 1 cut(s) | 227 |
| MspR9I | CCNGG | 1 cut(s) | 556 |
| MunI | CAATTG | 1 cut(s) | 963 |
| MvaI | CCWGG | 1 cut(s) | 556 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 92, 861 |
| NdeII | GATC | 5 cut(s) | 7, 199, 396, 498, 646 |
| NlaIII | CATG | 5 cut(s) | 340, 674, 749, 816, 944 |
| NlaIV | GGNNCC | 1 cut(s) | 768 |
| NspI | RCATGY | 1 cut(s) | 340 |
| PceI | AGGCCT | 1 cut(s) | 559 |
| PciI | ACATGT | 1 cut(s) | 336 |
| PfeI | GAWTC | 1 cut(s) | 477 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 711 |
| PkrI | GCNGC | 1 cut(s) | 877 |
| PleI | GAGTC | 4 cut(s) | 32, 400, 836, 907 |
| PmaCI | CACGTG | 1 cut(s) | 659 |
| PmlI | CACGTG | 1 cut(s) | 659 |
| PpsI | GAGTC | 4 cut(s) | 32, 400, 836, 907 |
| Ppu21I | YACGTR | 1 cut(s) | 659 |
| PscI | ACATGT | 1 cut(s) | 336 |
| PshBI | ATTAAT | 1 cut(s) | 249 |
| Psp6I | CCWGG | 1 cut(s) | 554 |
| PspCI | CACGTG | 1 cut(s) | 659 |
| PspGI | CCWGG | 1 cut(s) | 554 |
| PspN4I | GGNNCC | 1 cut(s) | 768 |
| PspPI | GGNCC | 4 cut(s) | 146, 688, 698, 734 |
| RsaI | GTAC | 2 cut(s) | 56, 845 |
| RsaNI | GTAC | 2 cut(s) | 55, 844 |
| SaqAI | TTAA | 5 cut(s) | 176, 228, 249, 542, 975 |
| SatI | GCNGC | 1 cut(s) | 876 |
| Sau3AI | GATC | 5 cut(s) | 7, 199, 396, 498, 646 |
| Sau96I | GGNCC | 4 cut(s) | 146, 688, 698, 734 |
| SchI | GAGTC | 4 cut(s) | 32, 400, 837, 908 |
| ScrFI | CCNGG | 1 cut(s) | 556 |
| SduI | GDGCHC | 1 cut(s) | 769 |
| SfaNI | GCATC | 1 cut(s) | 211 |
| SfcI | CTRYAG | 1 cut(s) | 817 |
| SinI | GGWCC | 1 cut(s) | 146 |
| SmlI | CTYRAG | 2 cut(s) | 50, 227 |
| SmoI | CTYRAG | 2 cut(s) | 50, 227 |
| Sse9I | AATT | 5 cut(s) | 361, 576, 589, 880, 963 |
| SseBI | AGGCCT | 1 cut(s) | 559 |
| SsiI | CCGC | 1 cut(s) | 295 |
| SspMI | CTAG | 3 cut(s) | 204, 440, 738 |
| StuI | AGGCCT | 1 cut(s) | 559 |
| StyD4I | CCNGG | 1 cut(s) | 554 |
| TaaI | ACNGT | 5 cut(s) | 62, 150, 216, 277, 608 |
| TaiI | ACGT | 4 cut(s) | 238, 358, 643, 661 |
| TaqI | TCGA | 1 cut(s) | 16 |
| TasI | AATT | 5 cut(s) | 361, 576, 589, 880, 963 |
| TfiI | GAWTC | 1 cut(s) | 477 |
| Tru1I | TTAA | 5 cut(s) | 176, 228, 249, 542, 975 |
| Tru9I | TTAA | 5 cut(s) | 176, 228, 249, 542, 975 |
| TscAI | CASTG | 3 cut(s) | 112, 133, 287 |
| TseI | GCWGC | 1 cut(s) | 875 |
| TspDTI | ATGAA | 1 cut(s) | 822 |
| TspRI | CASTG | 3 cut(s) | 112, 133, 287 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 711 |
| Vha464I | CTTAAG | 1 cut(s) | 227 |
| VpaK11BI | GGWCC | 1 cut(s) | 146 |
| VspI | ATTAAT | 1 cut(s) | 249 |
| XapI | RAATTY | 2 cut(s) | 361, 576 |
| XceI | RCATGY | 1 cut(s) | 340 |
| XspI | CTAG | 3 cut(s) | 204, 440, 738 |