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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 233 |
| Acc36I | ACCTGC | 1 cut(s) | 233 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 245 |
| AccII | CGCG | 5 cut(s) | 56, 133, 216, 300, 302 |
| AciI | CCGC | 6 cut(s) | 189, 214, 302, 439, 494, 510 |
| AclWI | GGATC | 5 cut(s) | 393, 430, 447, 602, 848 |
| AcoI | YGGCCR | 1 cut(s) | 479 |
| AcuI | CTGAAG | 3 cut(s) | 117, 261, 863 |
| AfaI | GTAC | 3 cut(s) | 426, 591, 656 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 245, 251, 301, 393, 477, 523, 664, 868 |
| AflII | CTTAAG | 1 cut(s) | 914 |
| AgsI | TTSAA | 1 cut(s) | 886 |
| AjnI | CCWGG | 1 cut(s) | 244 |
| AluBI | AGCT | 1 cut(s) | 170 |
| AluI | AGCT | 1 cut(s) | 170 |
| Alw26I | GTCTC | 1 cut(s) | 693 |
| AlwI | GGATC | 5 cut(s) | 393, 430, 447, 602, 848 |
| AoxI | GGCC | 4 cut(s) | 247, 303, 479, 525 |
| ApeKI | GCWGC | 7 cut(s) | 63, 149, 317, 320, 467, 512, 532 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 876 |
| AspLEI | GCGC | 5 cut(s) | 211, 218, 300, 302, 467 |
| AspS9I | GGNCC | 1 cut(s) | 746 |
| AsuC2I | CCSGG | 1 cut(s) | 179 |
| AsuHPI | GGTGA | 3 cut(s) | 300, 495, 826 |
| AvaII | GGWCC | 1 cut(s) | 746 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 638, 671 |
| BauI | CACGAG | 1 cut(s) | 696 |
| BbsI | GAAGAC | 1 cut(s) | 893 |
| BbvI | GCAGC | 7 cut(s) | 75, 161, 304, 307, 479, 519, 524 |
| BccI | CCATC | 3 cut(s) | 666, 722, 737 |
| BciT130I | CCWGG | 1 cut(s) | 246 |
| BciVI | GTATCC | 1 cut(s) | 901 |
| BcnI | CCSGG | 1 cut(s) | 179 |
| BcoDI | GTCTC | 1 cut(s) | 693 |
| BfaI | CTAG | 4 cut(s) | 159, 290, 414, 858 |
| BfmI | CTRYAG | 1 cut(s) | 379 |
| BfoI | RGCGCY | 1 cut(s) | 212 |
| BfrI | CTTAAG | 1 cut(s) | 914 |
| BfuAI | ACCTGC | 1 cut(s) | 233 |
| BfuI | GTATCC | 1 cut(s) | 901 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 692 |
| BisI | GCNGC | 8 cut(s) | 64, 150, 303, 318, 321, 468, 513, 533 |
| BlpI | GCTNAGC | 1 cut(s) | 8 |
| BlsI | GCNGC | 8 cut(s) | 65, 151, 304, 319, 322, 469, 514, 534 |
| BmcAI | AGTACT | 1 cut(s) | 426 |
| Bme1390I | CCNGG | 2 cut(s) | 179, 246 |
| Bme18I | GGWCC | 1 cut(s) | 746 |
| BmgT120I | GGNCC | 1 cut(s) | 746 |
| BmiI | GGNNCC | 1 cut(s) | 748 |
| BmrFI | CCNGG | 2 cut(s) | 179, 246 |
| BmrI | ACTGGG | 1 cut(s) | 416 |
| BmsI | GCATC | 6 cut(s) | 27, 264, 457, 509, 577, 814 |
| BmuI | ACTGGG | 1 cut(s) | 416 |
| BoxI | GACNNNNGTC | 1 cut(s) | 360 |
| BpiI | GAAGAC | 1 cut(s) | 893 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 535, 567 |
| BpmI | CTGGAG | 1 cut(s) | 428 |
| Bpu10I | CCTNAGC | 1 cut(s) | 542 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 8 |
| BpuEI | CTTGAG | 2 cut(s) | 570, 671 |
| BpuMI | CCSGG | 1 cut(s) | 179 |
| Bsa29I | ATCGAT | 1 cut(s) | 451 |
| BsaJI | CCNNGG | 2 cut(s) | 250, 460 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 245, 251, 301, 393, 477, 523, 664, 868 |
| Bse118I | RCCGGY | 1 cut(s) | 477 |
| Bse1I | ACTGG | 2 cut(s) | 422, 431 |
| BseBI | CCWGG | 1 cut(s) | 246 |
| BseCI | ATCGAT | 1 cut(s) | 451 |
| BseDI | CCNNGG | 2 cut(s) | 250, 460 |
| BseGI | GGATG | 2 cut(s) | 255, 488 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 245, 251, 301, 393, 477, 523, 664, 868 |
| BseMII | CTCAG | 3 cut(s) | 533, 612, 654 |
| BseNI | ACTGG | 2 cut(s) | 422, 431 |
| BsePI | GCGCGC | 1 cut(s) | 298 |
| BseXI | GCAGC | 7 cut(s) | 75, 161, 304, 307, 479, 519, 524 |
| BseYI | CCCAGC | 4 cut(s) | 205, 294, 554, 867 |
| BsgI | GTGCAG | 3 cut(s) | 205, 306, 518 |
| Bsh1236I | CGCG | 5 cut(s) | 56, 133, 216, 300, 302 |
| Bsh1285I | CGRYCG | 2 cut(s) | 406, 510 |
| BshFI | GGCC | 4 cut(s) | 249, 305, 481, 527 |
| BshVI | ATCGAT | 1 cut(s) | 451 |
| BsiEI | CGRYCG | 2 cut(s) | 406, 510 |
| BsiSI | CCGG | 3 cut(s) | 179, 478, 524 |
| BslFI | GGGAC | 1 cut(s) | 933 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 245, 251, 301, 393, 477, 523, 664, 868 |
| BsmAI | GTCTC | 1 cut(s) | 693 |
| BsmFI | GGGAC | 1 cut(s) | 933 |
| BsnI | GGCC | 4 cut(s) | 249, 305, 481, 527 |
| Bsp143I | GATC | 7 cut(s) | 398, 403, 435, 452, 607, 784, 853 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 8 |
| BspACI | CCGC | 6 cut(s) | 189, 214, 302, 439, 494, 510 |
| BspANI | GGCC | 4 cut(s) | 249, 305, 481, 527 |
| BspCNI | CTCAG | 3 cut(s) | 534, 613, 653 |
| BspDI | ATCGAT | 1 cut(s) | 451 |
| BspFNI | CGCG | 5 cut(s) | 56, 133, 216, 300, 302 |
| BspHI | TCATGA | 1 cut(s) | 937 |
| BspLI | GGNNCC | 1 cut(s) | 748 |
| BspMI | ACCTGC | 1 cut(s) | 233 |
| BspPI | GGATC | 5 cut(s) | 393, 430, 447, 602, 848 |
| BspTI | CTTAAG | 1 cut(s) | 914 |
| BsrFI | RCCGGY | 1 cut(s) | 477 |
| BsrI | ACTGG | 2 cut(s) | 422, 431 |
| BssAI | RCCGGY | 1 cut(s) | 477 |
| BssECI | CCNNGG | 2 cut(s) | 250, 460 |
| BssHII | GCGCGC | 1 cut(s) | 298 |
| BssMI | GATC | 7 cut(s) | 398, 403, 435, 452, 607, 784, 853 |
| BssSI | CACGAG | 1 cut(s) | 696 |
| Bst2BI | CACGAG | 1 cut(s) | 696 |
| Bst2UI | CCWGG | 1 cut(s) | 246 |
| Bst4CI | ACNGT | 5 cut(s) | 116, 359, 564, 903, 964 |
| BstAFI | CTTAAG | 1 cut(s) | 914 |
| BstC8I | GCNNGC | 7 cut(s) | 220, 264, 300, 325, 479, 483, 498 |
| BstDEI | CTNAG | 5 cut(s) | 8, 542, 572, 621, 640 |
| BstF5I | GGATG | 2 cut(s) | 255, 488 |
| BstFNI | CGCG | 5 cut(s) | 56, 133, 216, 300, 302 |
| BstH2I | RGCGCY | 1 cut(s) | 212 |
| BstHHI | GCGC | 5 cut(s) | 211, 218, 300, 302, 467 |
| BstKTI | GATC | 7 cut(s) | 401, 406, 438, 455, 610, 787, 856 |
| BstMAI | GTCTC | 1 cut(s) | 693 |
| BstMBI | GATC | 7 cut(s) | 398, 403, 435, 452, 607, 784, 853 |
| BstMCI | CGRYCG | 2 cut(s) | 406, 510 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 188, 197, 206, 215, 299, 692 |
| BstNI | CCWGG | 1 cut(s) | 246 |
| BstNSI | RCATGY | 1 cut(s) | 337 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 360 |
| BstSCI | CCNGG | 2 cut(s) | 177, 244 |
| BstSFI | CTRYAG | 1 cut(s) | 379 |
| BstUI | CGCG | 5 cut(s) | 56, 133, 216, 300, 302 |
| BstV1I | GCAGC | 7 cut(s) | 75, 161, 304, 307, 479, 519, 524 |
| BstV2I | GAAGAC | 1 cut(s) | 893 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 601 |
| Bsu15I | ATCGAT | 1 cut(s) | 451 |
| BsuI | GTATCC | 1 cut(s) | 901 |
| BsuRI | GGCC | 4 cut(s) | 249, 305, 481, 527 |
| BsuTUI | ATCGAT | 1 cut(s) | 451 |
| BtsCI | GGATG | 2 cut(s) | 255, 488 |
| BtsI | GCAGTG | 2 cut(s) | 705, 768 |
| BtsIMutI | CAGTG | 4 cut(s) | 438, 705, 726, 768 |
| BveI | ACCTGC | 1 cut(s) | 233 |
| Cac8I | GCNNGC | 7 cut(s) | 220, 264, 300, 325, 479, 483, 498 |
| CciI | TCATGA | 1 cut(s) | 937 |
| CfoI | GCGC | 5 cut(s) | 211, 218, 300, 302, 467 |
| Cfr10I | RCCGGY | 1 cut(s) | 477 |
| Cfr13I | GGNCC | 1 cut(s) | 746 |
| ClaI | ATCGAT | 1 cut(s) | 451 |
| Csp6I | GTAC | 3 cut(s) | 425, 590, 655 |
| CviAII | CATG | 2 cut(s) | 334, 938 |
| CviQI | GTAC | 3 cut(s) | 425, 590, 655 |
| DdeI | CTNAG | 5 cut(s) | 8, 542, 572, 621, 640 |
| DpnI | GATC | 7 cut(s) | 400, 405, 437, 454, 609, 786, 855 |
| DpnII | GATC | 7 cut(s) | 398, 403, 435, 452, 607, 784, 853 |
| EaeI | YGGCCR | 1 cut(s) | 479 |
| EciI | GGCGGA | 1 cut(s) | 428 |
| Eco47I | GGWCC | 1 cut(s) | 746 |
| Eco57I | CTGAAG | 3 cut(s) | 117, 261, 863 |
| EcoRII | CCWGG | 1 cut(s) | 244 |
| FaeI | CATG | 2 cut(s) | 337, 941 |
| FaiI | YATR | 2 cut(s) | 335, 939 |
| FaqI | GGGAC | 1 cut(s) | 933 |
| FatI | CATG | 2 cut(s) | 333, 937 |
| FauI | CCCGC | 3 cut(s) | 196, 221, 501 |
| Fnu4HI | GCNGC | 8 cut(s) | 64, 150, 303, 318, 321, 468, 513, 533 |
| FokI | GGATG | 2 cut(s) | 242, 475 |
| Fsp4HI | GCNGC | 8 cut(s) | 64, 150, 303, 318, 321, 468, 513, 533 |
| FspBI | CTAG | 4 cut(s) | 159, 290, 414, 858 |
| GlaI | GCGC | 5 cut(s) | 210, 217, 299, 301, 466 |
| GluI | GCNGC | 8 cut(s) | 64, 150, 303, 318, 321, 468, 513, 533 |
| GsaI | CCCAGC | 4 cut(s) | 209, 298, 558, 871 |
| GsuI | CTGGAG | 1 cut(s) | 428 |
| HaeII | RGCGCY | 1 cut(s) | 212 |
| HaeIII | GGCC | 4 cut(s) | 249, 305, 481, 527 |
| HapII | CCGG | 3 cut(s) | 179, 478, 524 |
| HhaI | GCGC | 5 cut(s) | 211, 218, 300, 302, 467 |
| Hin1II | CATG | 2 cut(s) | 337, 941 |
| Hin6I | GCGC | 5 cut(s) | 209, 216, 298, 300, 465 |
| HinP1I | GCGC | 5 cut(s) | 209, 216, 298, 300, 465 |
| HinfI | GANTC | 4 cut(s) | 19, 370, 520, 638 |
| HpaII | CCGG | 3 cut(s) | 179, 478, 524 |
| HphI | GGTGA | 3 cut(s) | 300, 495, 826 |
| Hpy188I | TCNGA | 4 cut(s) | 280, 403, 643, 673 |
| Hpy188III | TCNNGA | 4 cut(s) | 23, 414, 541, 938 |
| Hpy99I | CGWCG | 2 cut(s) | 317, 584 |
| HpyAV | CCTTC | 2 cut(s) | 360, 887 |
| HpyCH4III | ACNGT | 5 cut(s) | 116, 359, 564, 903, 964 |
| HpyCH4IV | ACGT | 1 cut(s) | 922 |
| HpyCH4V | TGCA | 5 cut(s) | 40, 222, 323, 500, 535 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 188, 197, 206, 215, 299, 692 |
| HpyF3I | CTNAG | 5 cut(s) | 8, 542, 572, 621, 640 |
| HpySE526I | ACGT | 1 cut(s) | 922 |
| Hsp92II | CATG | 2 cut(s) | 337, 941 |
| HspAI | GCGC | 5 cut(s) | 209, 216, 298, 300, 465 |
| KroI | GCCGGC | 1 cut(s) | 477 |
| KroNI | GCCGGC | 1 cut(s) | 479 |
| Kzo9I | GATC | 7 cut(s) | 398, 403, 435, 452, 607, 784, 853 |
| LmnI | GCTCC | 3 cut(s) | 175, 556, 954 |
| Lsp1109I | GCAGC | 7 cut(s) | 75, 161, 304, 307, 479, 519, 524 |
| LweI | GCATC | 6 cut(s) | 27, 264, 457, 509, 577, 814 |
| MaeI | CTAG | 4 cut(s) | 159, 290, 414, 858 |
| MaeII | ACGT | 1 cut(s) | 922 |
| MaeIII | GTNAC | 1 cut(s) | 229 |
| MalI | GATC | 7 cut(s) | 400, 405, 437, 454, 609, 786, 855 |
| MboI | GATC | 7 cut(s) | 398, 403, 435, 452, 607, 784, 853 |
| MboII | GAAGA | 1 cut(s) | 898 |
| MluCI | AATT | 2 cut(s) | 32, 122 |
| MlyI | GAGTC | 2 cut(s) | 364, 632 |
| MmeI | TCCRAC | 1 cut(s) | 635 |
| MroNI | GCCGGC | 1 cut(s) | 477 |
| MroXI | GAANNNNTTC | 1 cut(s) | 876 |
| MseI | TTAA | 2 cut(s) | 830, 915 |
| MspCI | CTTAAG | 1 cut(s) | 914 |
| MspI | CCGG | 3 cut(s) | 179, 478, 524 |
| MspR9I | CCNGG | 2 cut(s) | 179, 246 |
| MvaI | CCWGG | 1 cut(s) | 246 |
| MvnI | CGCG | 5 cut(s) | 56, 133, 216, 300, 302 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 188, 197, 206, 215, 299, 692 |
| NaeI | GCCGGC | 1 cut(s) | 479 |
| NciI | CCSGG | 1 cut(s) | 179 |
| NdeII | GATC | 7 cut(s) | 398, 403, 435, 452, 607, 784, 853 |
| NgoMIV | GCCGGC | 1 cut(s) | 477 |
| NlaIII | CATG | 2 cut(s) | 337, 941 |
| NlaIV | GGNNCC | 1 cut(s) | 748 |
| NmeAIII | GCCGAG | 3 cut(s) | 188, 231, 441 |
| NspI | RCATGY | 1 cut(s) | 337 |
| PagI | TCATGA | 1 cut(s) | 937 |
| PaqCI | CACCTGC | 1 cut(s) | 233 |
| PauI | GCGCGC | 1 cut(s) | 298 |
| PdiI | GCCGGC | 1 cut(s) | 479 |
| PdmI | GAANNNNTTC | 1 cut(s) | 876 |
| PfeI | GAWTC | 2 cut(s) | 19, 520 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 245 |
| PkrI | GCNGC | 8 cut(s) | 65, 151, 304, 319, 322, 469, 514, 534 |
| Ple19I | CGATCG | 1 cut(s) | 406 |
| PleI | GAGTC | 2 cut(s) | 364, 632 |
| PpsI | GAGTC | 2 cut(s) | 364, 632 |
| PshAI | GACNNNNGTC | 1 cut(s) | 360 |
| Psp6I | CCWGG | 1 cut(s) | 244 |
| PspFI | CCCAGC | 4 cut(s) | 205, 294, 554, 867 |
| PspGI | CCWGG | 1 cut(s) | 244 |
| PspN4I | GGNNCC | 1 cut(s) | 748 |
| PspPI | GGNCC | 1 cut(s) | 746 |
| PteI | GCGCGC | 1 cut(s) | 298 |
| PvuI | CGATCG | 1 cut(s) | 406 |
| RsaI | GTAC | 3 cut(s) | 426, 591, 656 |
| RsaNI | GTAC | 3 cut(s) | 425, 590, 655 |
| SaqAI | TTAA | 2 cut(s) | 830, 915 |
| SatI | GCNGC | 8 cut(s) | 64, 150, 303, 318, 321, 468, 513, 533 |
| Sau3AI | GATC | 7 cut(s) | 398, 403, 435, 452, 607, 784, 853 |
| Sau96I | GGNCC | 1 cut(s) | 746 |
| ScaI | AGTACT | 1 cut(s) | 426 |
| SchI | GAGTC | 2 cut(s) | 364, 632 |
| ScrFI | CCNGG | 2 cut(s) | 179, 246 |
| SetI | ASST | 9 cut(s) | 172, 227, 380, 462, 540, 622, 816, 879, 925 |
| SfaNI | GCATC | 6 cut(s) | 27, 264, 457, 509, 577, 814 |
| SfcI | CTRYAG | 1 cut(s) | 379 |
| SinI | GGWCC | 1 cut(s) | 746 |
| SmlI | CTYRAG | 3 cut(s) | 585, 650, 914 |
| SmoI | CTYRAG | 3 cut(s) | 585, 650, 914 |
| Sse9I | AATT | 2 cut(s) | 32, 122 |
| SsiI | CCGC | 6 cut(s) | 189, 214, 302, 439, 494, 510 |
| SspMI | CTAG | 4 cut(s) | 159, 290, 414, 858 |
| StyD4I | CCNGG | 2 cut(s) | 177, 244 |
| TaaI | ACNGT | 5 cut(s) | 116, 359, 564, 903, 964 |
| TaiI | ACGT | 1 cut(s) | 925 |
| TaqI | TCGA | 3 cut(s) | 364, 451, 616 |
| TaqII | GACCGA | 1 cut(s) | 660 |
| TasI | AATT | 2 cut(s) | 32, 122 |
| TatI | WGTACW | 1 cut(s) | 424 |
| TauI | GCSGC | 1 cut(s) | 305 |
| TfiI | GAWTC | 2 cut(s) | 19, 520 |
| Tru1I | TTAA | 2 cut(s) | 830, 915 |
| Tru9I | TTAA | 2 cut(s) | 830, 915 |
| TscAI | CASTG | 4 cut(s) | 438, 712, 733, 775 |
| TseI | GCWGC | 7 cut(s) | 63, 149, 317, 320, 467, 512, 532 |
| TspDTI | ATGAA | 2 cut(s) | 813, 926 |
| TspRI | CASTG | 4 cut(s) | 438, 712, 733, 775 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 245 |
| Vha464I | CTTAAG | 1 cut(s) | 914 |
| VpaK11BI | GGWCC | 1 cut(s) | 746 |
| XbaI | TCTAGA | 1 cut(s) | 413 |
| XceI | RCATGY | 1 cut(s) | 337 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 242 |
| XmnI | GAANNNNTTC | 1 cut(s) | 876 |
| XspI | CTAG | 4 cut(s) | 159, 290, 414, 858 |
| ZrmI | AGTACT | 1 cut(s) | 426 |