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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 319 |
| AclWI | GGATC | 4 cut(s) | 116, 185, 665, 726 |
| AcsI | RAATTY | 1 cut(s) | 600 |
| AcuI | CTGAAG | 1 cut(s) | 200 |
| AcvI | CACGTG | 1 cut(s) | 683 |
| AdeI | CACNNNGTG | 1 cut(s) | 701 |
| AfaI | GTAC | 2 cut(s) | 56, 212 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 64, 205, 295, 651 |
| AflIII | ACRYGT | 1 cut(s) | 360 |
| AgsI | TTSAA | 4 cut(s) | 223, 352, 514, 568 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 299 |
| AjiI | CACGTC | 2 cut(s) | 380, 665 |
| AjnI | CCWGG | 2 cut(s) | 289, 578 |
| AluBI | AGCT | 1 cut(s) | 455 |
| AluI | AGCT | 1 cut(s) | 455 |
| Alw26I | GTCTC | 2 cut(s) | 386, 541 |
| AlwI | GGATC | 4 cut(s) | 116, 185, 665, 726 |
| Ama87I | CYCGRG | 1 cut(s) | 605 |
| AoxI | GGCC | 1 cut(s) | 581 |
| ApoI | RAATTY | 1 cut(s) | 600 |
| AspLEI | GCGC | 1 cut(s) | 369 |
| AspS9I | GGNCC | 1 cut(s) | 582 |
| AsuHPI | GGTGA | 1 cut(s) | 163 |
| AvaI | CYCGRG | 1 cut(s) | 605 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 38, 71 |
| BbrPI | CACGTG | 1 cut(s) | 683 |
| BbsI | GAAGAC | 1 cut(s) | 230 |
| BccI | CCATC | 1 cut(s) | 66 |
| BciT130I | CCWGG | 2 cut(s) | 291, 580 |
| BcoDI | GTCTC | 2 cut(s) | 386, 541 |
| BfaI | CTAG | 2 cut(s) | 195, 464 |
| BfmI | CTRYAG | 1 cut(s) | 766 |
| Bme1390I | CCNGG | 2 cut(s) | 291, 580 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 299 |
| BmeT110I | CYCGRG | 1 cut(s) | 605 |
| BmgBI | CACGTC | 2 cut(s) | 380, 665 |
| BmgT120I | GGNCC | 1 cut(s) | 582 |
| BmrFI | CCNGG | 2 cut(s) | 291, 580 |
| BmrI | ACTGGG | 1 cut(s) | 597 |
| BmsI | GCATC | 3 cut(s) | 151, 235, 723 |
| BmuI | ACTGGG | 1 cut(s) | 597 |
| BpiI | GAAGAC | 1 cut(s) | 230 |
| BpuEI | CTTGAG | 1 cut(s) | 71 |
| BsaAI | YACGTR | 1 cut(s) | 683 |
| BsaJI | CCNNGG | 2 cut(s) | 289, 606 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 64, 205, 295, 651 |
| Bse1I | ACTGG | 3 cut(s) | 300, 304, 592 |
| BseBI | CCWGG | 2 cut(s) | 291, 580 |
| BseDI | CCNNGG | 2 cut(s) | 289, 606 |
| BseGI | GGATG | 1 cut(s) | 250 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 64, 205, 295, 651 |
| BseMII | CTCAG | 4 cut(s) | 12, 54, 167, 534 |
| BseNI | ACTGG | 3 cut(s) | 300, 304, 592 |
| BseYI | CCCAGC | 1 cut(s) | 204 |
| BshFI | GGCC | 1 cut(s) | 583 |
| BsiHKCI | CYCGRG | 1 cut(s) | 605 |
| BslFI | GGGAC | 2 cut(s) | 604, 723 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 64, 205, 295, 651 |
| BsmAI | GTCTC | 2 cut(s) | 386, 541 |
| BsmBI | CGTCTC | 1 cut(s) | 386 |
| BsmFI | GGGAC | 2 cut(s) | 604, 723 |
| BsnI | GGCC | 1 cut(s) | 583 |
| BsoBI | CYCGRG | 1 cut(s) | 605 |
| Bsp143I | GATC | 5 cut(s) | 121, 190, 420, 670, 718 |
| BspACI | CCGC | 1 cut(s) | 319 |
| BspANI | GGCC | 1 cut(s) | 583 |
| BspCNI | CTCAG | 4 cut(s) | 13, 53, 168, 535 |
| BspPI | GGATC | 4 cut(s) | 116, 185, 665, 726 |
| BsrI | ACTGG | 3 cut(s) | 300, 304, 592 |
| BssECI | CCNNGG | 2 cut(s) | 289, 606 |
| BssMI | GATC | 5 cut(s) | 121, 190, 420, 670, 718 |
| Bst2UI | CCWGG | 2 cut(s) | 291, 580 |
| Bst4CI | ACNGT | 2 cut(s) | 240, 699 |
| BstBAI | YACGTR | 1 cut(s) | 683 |
| BstC8I | GCNNGC | 1 cut(s) | 323 |
| BstDEI | CTNAG | 4 cut(s) | 21, 40, 176, 543 |
| BstF5I | GGATG | 1 cut(s) | 250 |
| BstHHI | GCGC | 1 cut(s) | 369 |
| BstKTI | GATC | 5 cut(s) | 124, 193, 423, 673, 721 |
| BstMAI | GTCTC | 2 cut(s) | 386, 541 |
| BstMBI | GATC | 5 cut(s) | 121, 190, 420, 670, 718 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 92 |
| BstNI | CCWGG | 2 cut(s) | 291, 580 |
| BstNSI | RCATGY | 1 cut(s) | 364 |
| BstSCI | CCNGG | 2 cut(s) | 289, 578 |
| BstSFI | CTRYAG | 1 cut(s) | 766 |
| BstV2I | GAAGAC | 1 cut(s) | 230 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 311, 392 |
| BsuRI | GGCC | 1 cut(s) | 583 |
| BtrI | CACGTC | 2 cut(s) | 380, 665 |
| BtsCI | GGATG | 1 cut(s) | 250 |
| BtsI | GCAGTG | 1 cut(s) | 105 |
| BtsIMutI | CAGTG | 4 cut(s) | 105, 236, 311, 585 |
| Cac8I | GCNNGC | 1 cut(s) | 323 |
| CfoI | GCGC | 1 cut(s) | 369 |
| Cfr13I | GGNCC | 1 cut(s) | 582 |
| Csp6I | GTAC | 2 cut(s) | 55, 211 |
| CviAII | CATG | 4 cut(s) | 361, 713, 722, 762 |
| CviJI | RGCY | 8 cut(s) | 5, 198, 299, 455, 528, 542, 583, 611 |
| CviKI_1 | RGCY | 8 cut(s) | 5, 198, 299, 455, 528, 542, 583, 611 |
| CviQI | GTAC | 2 cut(s) | 55, 211 |
| DdeI | CTNAG | 4 cut(s) | 21, 40, 176, 543 |
| DpnI | GATC | 5 cut(s) | 123, 192, 422, 672, 720 |
| DpnII | GATC | 5 cut(s) | 121, 190, 420, 670, 718 |
| DraIII | CACNNNGTG | 1 cut(s) | 701 |
| DriI | GACNNNNNGTC | 1 cut(s) | 299 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 299 |
| Eco57I | CTGAAG | 1 cut(s) | 200 |
| Eco72I | CACGTG | 1 cut(s) | 683 |
| Eco88I | CYCGRG | 1 cut(s) | 605 |
| EcoRII | CCWGG | 2 cut(s) | 289, 578 |
| Esp3I | CGTCTC | 1 cut(s) | 386 |
| FaeI | CATG | 4 cut(s) | 364, 716, 725, 765 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 548, 580 |
| FaqI | GGGAC | 2 cut(s) | 604, 723 |
| FatI | CATG | 4 cut(s) | 360, 712, 721, 761 |
| FokI | GGATG | 1 cut(s) | 257 |
| FspBI | CTAG | 2 cut(s) | 195, 464 |
| GlaI | GCGC | 1 cut(s) | 368 |
| GsaI | CCCAGC | 1 cut(s) | 208 |
| HaeIII | GGCC | 1 cut(s) | 583 |
| HhaI | GCGC | 1 cut(s) | 369 |
| Hin1II | CATG | 4 cut(s) | 364, 716, 725, 765 |
| Hin6I | GCGC | 1 cut(s) | 367 |
| HinP1I | GCGC | 1 cut(s) | 367 |
| HincII | GTYRAC | 1 cut(s) | 751 |
| HindII | GTYRAC | 1 cut(s) | 751 |
| HinfI | GANTC | 7 cut(s) | 38, 315, 430, 469, 501, 559, 777 |
| HphI | GGTGA | 1 cut(s) | 163 |
| Hpy166II | GTNNAC | 1 cut(s) | 751 |
| Hpy188I | TCNGA | 3 cut(s) | 43, 73, 177 |
| Hpy188III | TCNNGA | 3 cut(s) | 275, 565, 605 |
| Hpy8I | GTNNAC | 1 cut(s) | 751 |
| HpyAV | CCTTC | 4 cut(s) | 38, 224, 390, 520 |
| HpyCH4III | ACNGT | 2 cut(s) | 240, 699 |
| HpyCH4IV | ACGT | 4 cut(s) | 259, 379, 664, 682 |
| HpyCH4V | TGCA | 4 cut(s) | 535, 650, 695, 736 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 92 |
| HpyF3I | CTNAG | 4 cut(s) | 21, 40, 176, 543 |
| HpySE526I | ACGT | 4 cut(s) | 259, 379, 664, 682 |
| Hsp92II | CATG | 4 cut(s) | 364, 716, 725, 765 |
| HspAI | GCGC | 1 cut(s) | 367 |
| Kzo9I | GATC | 5 cut(s) | 121, 190, 420, 670, 718 |
| LmnI | GCTCC | 1 cut(s) | 291 |
| LpnPI | CCDG | 9 cut(s) | 33, 190, 276, 281, 303, 317, 565, 573, 592 |
| LweI | GCATC | 3 cut(s) | 151, 235, 723 |
| MaeI | CTAG | 2 cut(s) | 195, 464 |
| MaeII | ACGT | 4 cut(s) | 259, 379, 664, 682 |
| MalI | GATC | 5 cut(s) | 123, 192, 422, 672, 720 |
| MboI | GATC | 5 cut(s) | 121, 190, 420, 670, 718 |
| MboII | GAAGA | 2 cut(s) | 235, 422 |
| MluCI | AATT | 4 cut(s) | 168, 448, 600, 613 |
| MlyI | GAGTC | 2 cut(s) | 32, 424 |
| MmeI | TCCRAC | 1 cut(s) | 462 |
| MnlI | CCTC | 2 cut(s) | 171, 601 |
| MseI | TTAA | 4 cut(s) | 167, 252, 342, 371 |
| MslI | CAYNNNNRTG | 1 cut(s) | 390 |
| MspR9I | CCNGG | 2 cut(s) | 291, 580 |
| MvaI | CCWGG | 2 cut(s) | 291, 580 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 92 |
| NdeII | GATC | 5 cut(s) | 121, 190, 420, 670, 718 |
| NlaIII | CATG | 4 cut(s) | 364, 716, 725, 765 |
| NspI | RCATGY | 1 cut(s) | 364 |
| PciI | ACATGT | 1 cut(s) | 360 |
| PfeI | GAWTC | 5 cut(s) | 315, 469, 501, 559, 777 |
| PleI | GAGTC | 2 cut(s) | 32, 424 |
| PmaCI | CACGTG | 1 cut(s) | 683 |
| PmlI | CACGTG | 1 cut(s) | 683 |
| PpsI | GAGTC | 2 cut(s) | 32, 424 |
| Ppu21I | YACGTR | 1 cut(s) | 683 |
| PscI | ACATGT | 1 cut(s) | 360 |
| Psp6I | CCWGG | 2 cut(s) | 289, 578 |
| PspCI | CACGTG | 1 cut(s) | 683 |
| PspFI | CCCAGC | 1 cut(s) | 204 |
| PspGI | CCWGG | 2 cut(s) | 289, 578 |
| PspPI | GGNCC | 1 cut(s) | 582 |
| RsaI | GTAC | 2 cut(s) | 56, 212 |
| RsaNI | GTAC | 2 cut(s) | 55, 211 |
| RseI | CAYNNNNRTG | 1 cut(s) | 390 |
| SaqAI | TTAA | 4 cut(s) | 167, 252, 342, 371 |
| Sau3AI | GATC | 5 cut(s) | 121, 190, 420, 670, 718 |
| Sau96I | GGNCC | 1 cut(s) | 582 |
| SchI | GAGTC | 2 cut(s) | 32, 424 |
| ScrFI | CCNGG | 2 cut(s) | 291, 580 |
| SfaNI | GCATC | 3 cut(s) | 151, 235, 723 |
| SfcI | CTRYAG | 1 cut(s) | 766 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 390 |
| SmlI | CTYRAG | 1 cut(s) | 50 |
| SmoI | CTYRAG | 1 cut(s) | 50 |
| Sse9I | AATT | 4 cut(s) | 168, 448, 600, 613 |
| SsiI | CCGC | 1 cut(s) | 319 |
| SspMI | CTAG | 2 cut(s) | 195, 464 |
| StyD4I | CCNGG | 2 cut(s) | 289, 578 |
| TaaI | ACNGT | 2 cut(s) | 240, 699 |
| TaiI | ACGT | 4 cut(s) | 262, 382, 667, 685 |
| TaqI | TCGA | 1 cut(s) | 16 |
| TasI | AATT | 4 cut(s) | 168, 448, 600, 613 |
| TfiI | GAWTC | 5 cut(s) | 315, 469, 501, 559, 777 |
| Tru1I | TTAA | 4 cut(s) | 167, 252, 342, 371 |
| Tru9I | TTAA | 4 cut(s) | 167, 252, 342, 371 |
| TscAI | CASTG | 4 cut(s) | 112, 243, 311, 592 |
| TspDTI | ATGAA | 4 cut(s) | 150, 641, 769, 771 |
| TspGWI | ACGGA | 1 cut(s) | 270 |
| TspRI | CASTG | 4 cut(s) | 112, 243, 311, 592 |
| XapI | RAATTY | 1 cut(s) | 600 |
| XceI | RCATGY | 1 cut(s) | 364 |
| XspI | CTAG | 2 cut(s) | 195, 464 |