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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 785 |
| AccBSI | CCGCTC | 1 cut(s) | 721 |
| AccIII | TCCGGA | 1 cut(s) | 547 |
| AciI | CCGC | 3 cut(s) | 262, 721, 864 |
| AclWI | GGATC | 3 cut(s) | 116, 608, 669 |
| AcoI | YGGCCR | 3 cut(s) | 704, 787, 871 |
| AcsI | RAATTY | 2 cut(s) | 543, 691 |
| AcuI | CTGAAG | 1 cut(s) | 143 |
| AcvI | CACGTG | 2 cut(s) | 626, 644 |
| AdeI | CACNNNGTG | 1 cut(s) | 644 |
| AfaI | GTAC | 2 cut(s) | 56, 155 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 64, 238, 594, 702, 785 |
| AgsI | TTSAA | 5 cut(s) | 166, 295, 427, 457, 511 |
| AjiI | CACGTC | 1 cut(s) | 323 |
| AjnI | CCWGG | 3 cut(s) | 232, 521, 709 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 228, 260 |
| AluBI | AGCT | 2 cut(s) | 398, 554 |
| AluI | AGCT | 2 cut(s) | 398, 554 |
| Alw26I | GTCTC | 2 cut(s) | 329, 484 |
| AlwI | GGATC | 3 cut(s) | 116, 608, 669 |
| Aor13HI | TCCGGA | 1 cut(s) | 547 |
| AoxI | GGCC | 5 cut(s) | 524, 704, 787, 808, 871 |
| ApeKI | GCWGC | 1 cut(s) | 307 |
| ApoI | RAATTY | 2 cut(s) | 543, 691 |
| AspLEI | GCGC | 2 cut(s) | 312, 899 |
| AspS9I | GGNCC | 2 cut(s) | 525, 885 |
| AvaII | GGWCC | 1 cut(s) | 885 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 38, 71 |
| BbrPI | CACGTG | 2 cut(s) | 626, 644 |
| BbsI | GAAGAC | 1 cut(s) | 173 |
| BbvI | GCAGC | 1 cut(s) | 294 |
| BccI | CCATC | 1 cut(s) | 66 |
| BceAI | ACGGC | 1 cut(s) | 823 |
| BciT130I | CCWGG | 3 cut(s) | 234, 523, 711 |
| BcoDI | GTCTC | 2 cut(s) | 329, 484 |
| BfaI | CTAG | 3 cut(s) | 407, 758, 881 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 92 |
| BglII | AGATCT | 1 cut(s) | 908 |
| BisI | GCNGC | 1 cut(s) | 308 |
| BlsI | GCNGC | 1 cut(s) | 309 |
| Bme1390I | CCNGG | 3 cut(s) | 234, 523, 711 |
| Bme18I | GGWCC | 1 cut(s) | 885 |
| BmgBI | CACGTC | 1 cut(s) | 323 |
| BmgT120I | GGNCC | 2 cut(s) | 525, 885 |
| BmiI | GGNNCC | 2 cut(s) | 803, 886 |
| BmrFI | CCNGG | 3 cut(s) | 234, 523, 711 |
| BmrI | ACTGGG | 1 cut(s) | 540 |
| BmsI | GCATC | 1 cut(s) | 666 |
| BmuI | ACTGGG | 1 cut(s) | 540 |
| BpiI | GAAGAC | 1 cut(s) | 173 |
| BpuEI | CTTGAG | 1 cut(s) | 71 |
| BsaAI | YACGTR | 2 cut(s) | 626, 644 |
| BsaJI | CCNNGG | 3 cut(s) | 232, 710, 805 |
| BsaWI | WCCGGW | 1 cut(s) | 547 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 64, 238, 594, 702, 785 |
| Bse118I | RCCGGY | 1 cut(s) | 843 |
| Bse1I | ACTGG | 3 cut(s) | 243, 415, 535 |
| BseAI | TCCGGA | 1 cut(s) | 547 |
| BseBI | CCWGG | 3 cut(s) | 234, 523, 711 |
| BseDI | CCNNGG | 3 cut(s) | 232, 710, 805 |
| BseGI | GGATG | 2 cut(s) | 193, 721 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 64, 238, 594, 702, 785 |
| BseMII | CTCAG | 2 cut(s) | 12, 54 |
| BseNI | ACTGG | 3 cut(s) | 243, 415, 535 |
| BseXI | GCAGC | 1 cut(s) | 294 |
| Bsh1285I | CGRYCG | 1 cut(s) | 864 |
| BshFI | GGCC | 5 cut(s) | 526, 706, 789, 810, 873 |
| BsiEI | CGRYCG | 1 cut(s) | 864 |
| BsiSI | CCGG | 4 cut(s) | 548, 790, 844, 870 |
| BslFI | GGGAC | 2 cut(s) | 547, 666 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 64, 238, 594, 702, 785 |
| BsmAI | GTCTC | 2 cut(s) | 329, 484 |
| BsmBI | CGTCTC | 1 cut(s) | 329 |
| BsmFI | GGGAC | 2 cut(s) | 547, 666 |
| BsnI | GGCC | 5 cut(s) | 526, 706, 789, 810, 873 |
| Bsp13I | TCCGGA | 1 cut(s) | 547 |
| Bsp143I | GATC | 6 cut(s) | 121, 363, 613, 661, 877, 908 |
| BspACI | CCGC | 3 cut(s) | 262, 721, 864 |
| BspANI | GGCC | 5 cut(s) | 526, 706, 789, 810, 873 |
| BspCNI | CTCAG | 2 cut(s) | 13, 53 |
| BspEI | TCCGGA | 1 cut(s) | 547 |
| BspLI | GGNNCC | 2 cut(s) | 803, 886 |
| BspPI | GGATC | 3 cut(s) | 116, 608, 669 |
| BsrBI | CCGCTC | 1 cut(s) | 721 |
| BsrFI | RCCGGY | 1 cut(s) | 843 |
| BsrI | ACTGG | 3 cut(s) | 243, 415, 535 |
| BssAI | RCCGGY | 1 cut(s) | 843 |
| BssECI | CCNNGG | 3 cut(s) | 232, 710, 805 |
| BssMI | GATC | 6 cut(s) | 121, 363, 613, 661, 877, 908 |
| Bst2UI | CCWGG | 3 cut(s) | 234, 523, 711 |
| Bst4CI | ACNGT | 2 cut(s) | 183, 824 |
| BstBAI | YACGTR | 2 cut(s) | 626, 644 |
| BstC8I | GCNNGC | 1 cut(s) | 266 |
| BstDEI | CTNAG | 3 cut(s) | 21, 40, 486 |
| BstDSI | CCRYGG | 1 cut(s) | 805 |
| BstF5I | GGATG | 2 cut(s) | 193, 721 |
| BstHHI | GCGC | 2 cut(s) | 312, 899 |
| BstKTI | GATC | 6 cut(s) | 124, 366, 616, 664, 880, 911 |
| BstMAI | GTCTC | 2 cut(s) | 329, 484 |
| BstMBI | GATC | 6 cut(s) | 121, 363, 613, 661, 877, 908 |
| BstMCI | CGRYCG | 1 cut(s) | 864 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 92 |
| BstNI | CCWGG | 3 cut(s) | 234, 523, 711 |
| BstNSI | RCATGY | 1 cut(s) | 307 |
| BstSCI | CCNGG | 3 cut(s) | 232, 521, 709 |
| BstV1I | GCAGC | 1 cut(s) | 294 |
| BstV2I | GAAGAC | 1 cut(s) | 173 |
| BstX2I | RGATCY | 1 cut(s) | 908 |
| BstYI | RGATCY | 1 cut(s) | 908 |
| BsuRI | GGCC | 5 cut(s) | 526, 706, 789, 810, 873 |
| BtgI | CCRYGG | 1 cut(s) | 805 |
| BtrI | CACGTC | 1 cut(s) | 323 |
| BtsCI | GGATG | 2 cut(s) | 193, 721 |
| BtsIMutI | CAGTG | 3 cut(s) | 179, 254, 528 |
| Cac8I | GCNNGC | 1 cut(s) | 266 |
| CfoI | GCGC | 2 cut(s) | 312, 899 |
| Cfr10I | RCCGGY | 1 cut(s) | 843 |
| Cfr13I | GGNCC | 2 cut(s) | 525, 885 |
| Csp6I | GTAC | 2 cut(s) | 55, 154 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 100, 135, 316, 351 |
| CviAII | CATG | 5 cut(s) | 304, 656, 665, 780, 875 |
| CviQI | GTAC | 2 cut(s) | 55, 154 |
| DdeI | CTNAG | 3 cut(s) | 21, 40, 486 |
| DpnI | GATC | 6 cut(s) | 123, 365, 615, 663, 879, 910 |
| DpnII | GATC | 6 cut(s) | 121, 363, 613, 661, 877, 908 |
| DraI | TTTAAA | 1 cut(s) | 604 |
| DraIII | CACNNNGTG | 1 cut(s) | 644 |
| EaeI | YGGCCR | 3 cut(s) | 704, 787, 871 |
| Eco47I | GGWCC | 1 cut(s) | 885 |
| Eco57I | CTGAAG | 1 cut(s) | 143 |
| Eco72I | CACGTG | 2 cut(s) | 626, 644 |
| EcoRII | CCWGG | 3 cut(s) | 232, 521, 709 |
| Esp3I | CGTCTC | 1 cut(s) | 329 |
| FaeI | CATG | 5 cut(s) | 307, 659, 668, 783, 878 |
| FaqI | GGGAC | 2 cut(s) | 547, 666 |
| FatI | CATG | 5 cut(s) | 303, 655, 664, 779, 874 |
| Fnu4HI | GCNGC | 1 cut(s) | 308 |
| FokI | GGATG | 2 cut(s) | 200, 728 |
| Fsp4HI | GCNGC | 1 cut(s) | 308 |
| FspBI | CTAG | 3 cut(s) | 407, 758, 881 |
| GlaI | GCGC | 2 cut(s) | 311, 898 |
| GluI | GCNGC | 1 cut(s) | 308 |
| HaeIII | GGCC | 5 cut(s) | 526, 706, 789, 810, 873 |
| HapII | CCGG | 4 cut(s) | 548, 790, 844, 870 |
| HhaI | GCGC | 2 cut(s) | 312, 899 |
| Hin1II | CATG | 5 cut(s) | 307, 659, 668, 783, 878 |
| Hin6I | GCGC | 2 cut(s) | 310, 897 |
| HinP1I | GCGC | 2 cut(s) | 310, 897 |
| HincII | GTYRAC | 1 cut(s) | 839 |
| HindII | GTYRAC | 1 cut(s) | 839 |
| HinfI | GANTC | 4 cut(s) | 38, 258, 373, 444 |
| HpaII | CCGG | 4 cut(s) | 548, 790, 844, 870 |
| Hpy166II | GTNNAC | 3 cut(s) | 728, 820, 839 |
| Hpy188I | TCNGA | 1 cut(s) | 43 |
| Hpy188III | TCNNGA | 4 cut(s) | 218, 508, 548, 912 |
| Hpy8I | GTNNAC | 3 cut(s) | 728, 820, 839 |
| HpyAV | CCTTC | 5 cut(s) | 38, 167, 333, 463, 706 |
| HpyCH4III | ACNGT | 2 cut(s) | 183, 824 |
| HpyCH4IV | ACGT | 4 cut(s) | 322, 607, 625, 643 |
| HpyCH4V | TGCA | 6 cut(s) | 478, 593, 638, 679, 828, 854 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 92 |
| HpyF3I | CTNAG | 3 cut(s) | 21, 40, 486 |
| HpySE526I | ACGT | 4 cut(s) | 322, 607, 625, 643 |
| Hsp92II | CATG | 5 cut(s) | 307, 659, 668, 783, 878 |
| HspAI | GCGC | 2 cut(s) | 310, 897 |
| Kpn2I | TCCGGA | 1 cut(s) | 547 |
| Kzo9I | GATC | 6 cut(s) | 121, 363, 613, 661, 877, 908 |
| LmnI | GCTCC | 1 cut(s) | 234 |
| Lsp1109I | GCAGC | 1 cut(s) | 294 |
| LweI | GCATC | 1 cut(s) | 666 |
| MaeI | CTAG | 3 cut(s) | 407, 758, 881 |
| MaeII | ACGT | 4 cut(s) | 322, 607, 625, 643 |
| MalI | GATC | 6 cut(s) | 123, 365, 615, 663, 879, 910 |
| MbiI | CCGCTC | 1 cut(s) | 721 |
| MboI | GATC | 6 cut(s) | 121, 363, 613, 661, 877, 908 |
| MboII | GAAGA | 3 cut(s) | 146, 178, 365 |
| MflI | RGATCY | 1 cut(s) | 908 |
| MluCI | AATT | 7 cut(s) | 328, 391, 427, 461, 543, 556, 691 |
| MlyI | GAGTC | 2 cut(s) | 32, 367 |
| MnlI | CCTC | 3 cut(s) | 751, 792, 877 |
| MroI | TCCGGA | 1 cut(s) | 547 |
| MseI | TTAA | 5 cut(s) | 27, 195, 314, 603, 813 |
| MspI | CCGG | 4 cut(s) | 548, 790, 844, 870 |
| MspR9I | CCNGG | 3 cut(s) | 234, 523, 711 |
| MssI | GTTTAAAC | 1 cut(s) | 604 |
| MvaI | CCWGG | 3 cut(s) | 234, 523, 711 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 92 |
| NdeII | GATC | 6 cut(s) | 121, 363, 613, 661, 877, 908 |
| NlaIII | CATG | 5 cut(s) | 307, 659, 668, 783, 878 |
| NlaIV | GGNNCC | 2 cut(s) | 803, 886 |
| NspI | RCATGY | 1 cut(s) | 307 |
| PfeI | GAWTC | 2 cut(s) | 258, 444 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 785 |
| PkrI | GCNGC | 1 cut(s) | 309 |
| PleI | GAGTC | 2 cut(s) | 32, 367 |
| PmaCI | CACGTG | 2 cut(s) | 626, 644 |
| PmeI | GTTTAAAC | 1 cut(s) | 604 |
| PmlI | CACGTG | 2 cut(s) | 626, 644 |
| PpsI | GAGTC | 2 cut(s) | 32, 367 |
| Ppu21I | YACGTR | 2 cut(s) | 626, 644 |
| Psp6I | CCWGG | 3 cut(s) | 232, 521, 709 |
| PspCI | CACGTG | 2 cut(s) | 626, 644 |
| PspGI | CCWGG | 3 cut(s) | 232, 521, 709 |
| PspN4I | GGNNCC | 2 cut(s) | 803, 886 |
| PspPI | GGNCC | 2 cut(s) | 525, 885 |
| PsuI | RGATCY | 1 cut(s) | 908 |
| RsaI | GTAC | 2 cut(s) | 56, 155 |
| RsaNI | GTAC | 2 cut(s) | 55, 154 |
| SaqAI | TTAA | 5 cut(s) | 27, 195, 314, 603, 813 |
| SatI | GCNGC | 1 cut(s) | 308 |
| Sau3AI | GATC | 6 cut(s) | 121, 363, 613, 661, 877, 908 |
| Sau96I | GGNCC | 2 cut(s) | 525, 885 |
| SchI | GAGTC | 2 cut(s) | 32, 367 |
| ScrFI | CCNGG | 3 cut(s) | 234, 523, 711 |
| SfaNI | GCATC | 1 cut(s) | 666 |
| SinI | GGWCC | 1 cut(s) | 885 |
| SmlI | CTYRAG | 1 cut(s) | 50 |
| SmoI | CTYRAG | 1 cut(s) | 50 |
| Sse9I | AATT | 7 cut(s) | 328, 391, 427, 461, 543, 556, 691 |
| SsiI | CCGC | 3 cut(s) | 262, 721, 864 |
| SspMI | CTAG | 3 cut(s) | 407, 758, 881 |
| StyD4I | CCNGG | 3 cut(s) | 232, 521, 709 |
| TaaI | ACNGT | 2 cut(s) | 183, 824 |
| TaiI | ACGT | 4 cut(s) | 325, 610, 628, 646 |
| TaqI | TCGA | 2 cut(s) | 16, 72 |
| TasI | AATT | 7 cut(s) | 328, 391, 427, 461, 543, 556, 691 |
| TfiI | GAWTC | 2 cut(s) | 258, 444 |
| Tru1I | TTAA | 5 cut(s) | 27, 195, 314, 603, 813 |
| Tru9I | TTAA | 5 cut(s) | 27, 195, 314, 603, 813 |
| TscAI | CASTG | 3 cut(s) | 186, 254, 535 |
| TseI | GCWGC | 1 cut(s) | 307 |
| TspDTI | ATGAA | 3 cut(s) | 147, 584, 688 |
| TspRI | CASTG | 3 cut(s) | 186, 254, 535 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 785 |
| VpaK11BI | GGWCC | 1 cut(s) | 885 |
| XapI | RAATTY | 2 cut(s) | 543, 691 |
| XceI | RCATGY | 1 cut(s) | 307 |
| XspI | CTAG | 3 cut(s) | 407, 758, 881 |