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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 246, 268 |
| AccBSI | CCGCTC | 1 cut(s) | 53 |
| AccI | GTMKAC | 1 cut(s) | 68 |
| AccII | CGCG | 1 cut(s) | 219 |
| AciI | CCGC | 8 cut(s) | 53, 109, 217, 219, 240, 263, 303, 356 |
| AclWI | GGATC | 2 cut(s) | 63, 596 |
| AcoI | YGGCCR | 1 cut(s) | 288 |
| AcsI | RAATTY | 1 cut(s) | 365 |
| AcuI | CTGAAG | 1 cut(s) | 611 |
| AcyI | GRCGYC | 1 cut(s) | 247 |
| AfaI | GTAC | 1 cut(s) | 458 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 332, 466, 616 |
| AflII | CTTAAG | 1 cut(s) | 662 |
| AgsI | TTSAA | 3 cut(s) | 19, 31, 634 |
| AjnI | CCWGG | 4 cut(s) | 235, 271, 346, 387 |
| AloI | GAACNNNNNNTCC | 1 cut(s) | 31 |
| AluBI | AGCT | 3 cut(s) | 99, 158, 171 |
| AluI | AGCT | 3 cut(s) | 99, 158, 171 |
| Alw21I | GWGCWC | 1 cut(s) | 232 |
| Alw26I | GTCTC | 1 cut(s) | 495 |
| AlwI | GGATC | 2 cut(s) | 63, 596 |
| AoxI | GGCC | 2 cut(s) | 175, 288 |
| ApeKI | GCWGC | 4 cut(s) | 37, 129, 329, 358 |
| ApoI | RAATTY | 1 cut(s) | 365 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 624 |
| AspLEI | GCGC | 1 cut(s) | 249 |
| AspS9I | GGNCC | 2 cut(s) | 175, 548 |
| AsuHPI | GGTGA | 2 cut(s) | 208, 574 |
| AsuNHI | GCTAGC | 1 cut(s) | 158 |
| AvaII | GGWCC | 1 cut(s) | 548 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 440, 473 |
| BalI | TGGCCA | 1 cut(s) | 290 |
| BanI | GGYRCC | 2 cut(s) | 246, 268 |
| BbsI | GAAGAC | 2 cut(s) | 219, 641 |
| Bbv12I | GWGCWC | 1 cut(s) | 232 |
| BbvI | GCAGC | 4 cut(s) | 24, 141, 316, 345 |
| BccI | CCATC | 2 cut(s) | 524, 539 |
| BciT130I | CCWGG | 4 cut(s) | 237, 273, 348, 389 |
| BcoDI | GTCTC | 1 cut(s) | 495 |
| BfaI | CTAG | 3 cut(s) | 159, 191, 606 |
| BfmI | CTRYAG | 1 cut(s) | 74 |
| BfoI | RGCGCY | 1 cut(s) | 250 |
| BfrI | CTTAAG | 1 cut(s) | 662 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 494 |
| BisI | GCNGC | 5 cut(s) | 38, 130, 303, 330, 359 |
| BlsI | GCNGC | 5 cut(s) | 39, 131, 304, 331, 360 |
| Bme1390I | CCNGG | 4 cut(s) | 237, 273, 348, 389 |
| Bme18I | GGWCC | 1 cut(s) | 548 |
| BmgT120I | GGNCC | 2 cut(s) | 175, 548 |
| BmiI | GGNNCC | 2 cut(s) | 248, 270 |
| BmrFI | CCNGG | 4 cut(s) | 237, 273, 348, 389 |
| BmsI | GCATC | 1 cut(s) | 646 |
| BmtI | GCTAGC | 1 cut(s) | 162 |
| BoxI | GACNNNNGTC | 1 cut(s) | 138 |
| BpiI | GAAGAC | 2 cut(s) | 219, 641 |
| BpuEI | CTTGAG | 1 cut(s) | 473 |
| BsaBI | GATNNNNATC | 1 cut(s) | 383 |
| BsaHI | GRCGYC | 1 cut(s) | 247 |
| BsaJI | CCNNGG | 1 cut(s) | 217 |
| BsaXI | ACNNNNNCTCC | 1 cut(s) | 29 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 332, 466, 616 |
| Bse1I | ACTGG | 2 cut(s) | 116, 250 |
| Bse8I | GATNNNNATC | 1 cut(s) | 383 |
| BseBI | CCWGG | 4 cut(s) | 237, 273, 348, 389 |
| BseDI | CCNNGG | 1 cut(s) | 217 |
| BseGI | GGATG | 1 cut(s) | 661 |
| BseJI | GATNNNNATC | 1 cut(s) | 383 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 332, 466, 616 |
| BseMII | CTCAG | 2 cut(s) | 414, 456 |
| BseNI | ACTGG | 2 cut(s) | 116, 250 |
| BseXI | GCAGC | 4 cut(s) | 24, 141, 316, 345 |
| BseYI | CCCAGC | 4 cut(s) | 105, 332, 374, 615 |
| BsgI | GTGCAG | 1 cut(s) | 23 |
| Bsh1236I | CGCG | 1 cut(s) | 219 |
| BshFI | GGCC | 2 cut(s) | 177, 290 |
| BshNI | GGYRCC | 2 cut(s) | 246, 268 |
| BsiHKAI | GWGCWC | 1 cut(s) | 232 |
| BsiSI | CCGG | 1 cut(s) | 143 |
| BslFI | GGGAC | 1 cut(s) | 681 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 332, 466, 616 |
| BsmAI | GTCTC | 1 cut(s) | 495 |
| BsmFI | GGGAC | 1 cut(s) | 681 |
| BsnI | GGCC | 2 cut(s) | 177, 290 |
| Bsp1286I | GDGCHC | 1 cut(s) | 232 |
| Bsp143I | GATC | 2 cut(s) | 55, 601 |
| BspACI | CCGC | 8 cut(s) | 53, 109, 217, 219, 240, 263, 303, 356 |
| BspANI | GGCC | 2 cut(s) | 177, 290 |
| BspCNI | CTCAG | 2 cut(s) | 415, 455 |
| BspFNI | CGCG | 1 cut(s) | 219 |
| BspHI | TCATGA | 1 cut(s) | 685 |
| BspLI | GGNNCC | 2 cut(s) | 248, 270 |
| BspMAI | CTGCAG | 1 cut(s) | 78 |
| BspOI | GCTAGC | 1 cut(s) | 162 |
| BspPI | GGATC | 2 cut(s) | 63, 596 |
| BspT107I | GGYRCC | 2 cut(s) | 246, 268 |
| BspTI | CTTAAG | 1 cut(s) | 662 |
| BsrBI | CCGCTC | 1 cut(s) | 53 |
| BsrI | ACTGG | 2 cut(s) | 116, 250 |
| BssECI | CCNNGG | 1 cut(s) | 217 |
| BssMI | GATC | 2 cut(s) | 55, 601 |
| BssNI | GRCGYC | 1 cut(s) | 247 |
| Bst2UI | CCWGG | 4 cut(s) | 237, 273, 348, 389 |
| Bst4CI | ACNGT | 2 cut(s) | 552, 651 |
| BstACI | GRCGYC | 1 cut(s) | 247 |
| BstAFI | CTTAAG | 1 cut(s) | 662 |
| BstC8I | GCNNGC | 2 cut(s) | 160, 179 |
| BstDEI | CTNAG | 2 cut(s) | 423, 442 |
| BstDSI | CCRYGG | 1 cut(s) | 217 |
| BstF5I | GGATG | 1 cut(s) | 661 |
| BstFNI | CGCG | 1 cut(s) | 219 |
| BstH2I | RGCGCY | 1 cut(s) | 250 |
| BstHHI | GCGC | 1 cut(s) | 249 |
| BstKTI | GATC | 2 cut(s) | 58, 604 |
| BstMAI | GTCTC | 1 cut(s) | 495 |
| BstMBI | GATC | 2 cut(s) | 55, 601 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 129, 168, 246, 253, 380, 494 |
| BstNI | CCWGG | 4 cut(s) | 237, 273, 348, 389 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 138 |
| BstSCI | CCNGG | 4 cut(s) | 235, 271, 346, 387 |
| BstSFI | CTRYAG | 1 cut(s) | 74 |
| BstUI | CGCG | 1 cut(s) | 219 |
| BstV1I | GCAGC | 4 cut(s) | 24, 141, 316, 345 |
| BstV2I | GAAGAC | 2 cut(s) | 219, 641 |
| BstX2I | RGATCY | 1 cut(s) | 55 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 185 |
| BstYI | RGATCY | 1 cut(s) | 55 |
| BsuRI | GGCC | 2 cut(s) | 177, 290 |
| BtgI | CCRYGG | 1 cut(s) | 217 |
| BtgZI | GCGATG | 1 cut(s) | 222 |
| BtsCI | GGATG | 1 cut(s) | 661 |
| BtsI | GCAGTG | 2 cut(s) | 188, 230 |
| BtsIMutI | CAGTG | 3 cut(s) | 188, 230, 257 |
| Cac8I | GCNNGC | 2 cut(s) | 160, 179 |
| CciI | TCATGA | 1 cut(s) | 685 |
| CfoI | GCGC | 1 cut(s) | 249 |
| Cfr13I | GGNCC | 2 cut(s) | 175, 548 |
| Cfr42I | CCGCGG | 1 cut(s) | 220 |
| Csp6I | GTAC | 1 cut(s) | 457 |
| CviAII | CATG | 1 cut(s) | 686 |
| CviJI | RGCY | 8 cut(s) | 99, 158, 171, 177, 290, 302, 407, 609 |
| CviKI_1 | RGCY | 8 cut(s) | 99, 158, 171, 177, 290, 302, 407, 609 |
| CviQI | GTAC | 1 cut(s) | 457 |
| DdeI | CTNAG | 2 cut(s) | 423, 442 |
| DinI | GGCGCC | 1 cut(s) | 248 |
| DpnI | GATC | 2 cut(s) | 57, 603 |
| DpnII | GATC | 2 cut(s) | 55, 601 |
| EaeI | YGGCCR | 1 cut(s) | 288 |
| Eco47I | GGWCC | 1 cut(s) | 548 |
| Eco57I | CTGAAG | 1 cut(s) | 611 |
| EcoRII | CCWGG | 4 cut(s) | 235, 271, 346, 387 |
| EgeI | GGCGCC | 1 cut(s) | 248 |
| EheI | GGCGCC | 1 cut(s) | 248 |
| FaeI | CATG | 1 cut(s) | 689 |
| FaiI | YATR | 6 cut(s) | 83, 287, 404, 597, 687, 703 |
| FaqI | GGGAC | 1 cut(s) | 681 |
| FatI | CATG | 1 cut(s) | 685 |
| FauI | CCCGC | 1 cut(s) | 363 |
| FblI | GTMKAC | 1 cut(s) | 68 |
| Fnu4HI | GCNGC | 5 cut(s) | 38, 130, 303, 330, 359 |
| FokI | GGATG | 1 cut(s) | 668 |
| Fsp4HI | GCNGC | 5 cut(s) | 38, 130, 303, 330, 359 |
| FspBI | CTAG | 3 cut(s) | 159, 191, 606 |
| GlaI | GCGC | 1 cut(s) | 248 |
| GluI | GCNGC | 5 cut(s) | 38, 130, 303, 330, 359 |
| GsaI | CCCAGC | 4 cut(s) | 109, 336, 378, 619 |
| HaeII | RGCGCY | 1 cut(s) | 250 |
| HaeIII | GGCC | 2 cut(s) | 177, 290 |
| HapII | CCGG | 1 cut(s) | 143 |
| HhaI | GCGC | 1 cut(s) | 249 |
| Hin1I | GRCGYC | 1 cut(s) | 247 |
| Hin1II | CATG | 1 cut(s) | 689 |
| Hin6I | GCGC | 1 cut(s) | 247 |
| HinP1I | GCGC | 1 cut(s) | 247 |
| HincII | GTYRAC | 1 cut(s) | 69 |
| HindII | GTYRAC | 1 cut(s) | 69 |
| HindIII | AAGCTT | 1 cut(s) | 169 |
| HinfI | GANTC | 4 cut(s) | 8, 70, 351, 440 |
| HpaII | CCGG | 1 cut(s) | 143 |
| HphI | GGTGA | 2 cut(s) | 208, 574 |
| Hpy166II | GTNNAC | 2 cut(s) | 69, 188 |
| Hpy188I | TCNGA | 2 cut(s) | 445, 556 |
| Hpy188III | TCNNGA | 1 cut(s) | 686 |
| Hpy8I | GTNNAC | 2 cut(s) | 69, 188 |
| HpyAV | CCTTC | 3 cut(s) | 25, 142, 635 |
| HpyCH4III | ACNGT | 2 cut(s) | 552, 651 |
| HpyCH4IV | ACGT | 1 cut(s) | 670 |
| HpyCH4V | TGCA | 4 cut(s) | 40, 76, 89, 383 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 129, 168, 246, 253, 380, 494 |
| HpyF3I | CTNAG | 2 cut(s) | 423, 442 |
| HpySE526I | ACGT | 1 cut(s) | 670 |
| Hsp92I | GRCGYC | 1 cut(s) | 247 |
| Hsp92II | CATG | 1 cut(s) | 689 |
| HspAI | GCGC | 1 cut(s) | 247 |
| KasI | GGCGCC | 1 cut(s) | 246 |
| KspI | CCGCGG | 1 cut(s) | 220 |
| Kzo9I | GATC | 2 cut(s) | 55, 601 |
| LmnI | GCTCC | 3 cut(s) | 96, 227, 702 |
| Lsp1109I | GCAGC | 4 cut(s) | 24, 141, 316, 345 |
| LweI | GCATC | 1 cut(s) | 646 |
| MaeI | CTAG | 3 cut(s) | 159, 191, 606 |
| MaeII | ACGT | 1 cut(s) | 670 |
| MaeIII | GTNAC | 1 cut(s) | 21 |
| MalI | GATC | 2 cut(s) | 57, 603 |
| MbiI | CCGCTC | 1 cut(s) | 53 |
| MboI | GATC | 2 cut(s) | 55, 601 |
| MboII | GAAGA | 3 cut(s) | 177, 224, 646 |
| MflI | RGATCY | 1 cut(s) | 55 |
| MhlI | GDGCHC | 1 cut(s) | 232 |
| MlsI | TGGCCA | 1 cut(s) | 290 |
| MluCI | AATT | 1 cut(s) | 365 |
| MluNI | TGGCCA | 1 cut(s) | 290 |
| Mly113I | GGCGCC | 1 cut(s) | 247 |
| MlyI | GAGTC | 3 cut(s) | 17, 64, 434 |
| MnlI | CCTC | 4 cut(s) | 119, 187, 259, 287 |
| Mox20I | TGGCCA | 1 cut(s) | 290 |
| MroXI | GAANNNNTTC | 1 cut(s) | 624 |
| MscI | TGGCCA | 1 cut(s) | 290 |
| MseI | TTAA | 3 cut(s) | 578, 587, 663 |
| Msp20I | TGGCCA | 1 cut(s) | 290 |
| MspA1I | CMGCKG | 4 cut(s) | 109, 219, 305, 358 |
| MspCI | CTTAAG | 1 cut(s) | 662 |
| MspI | CCGG | 1 cut(s) | 143 |
| MspR9I | CCNGG | 4 cut(s) | 237, 273, 348, 389 |
| MvaI | CCWGG | 4 cut(s) | 237, 273, 348, 389 |
| MvnI | CGCG | 1 cut(s) | 219 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 129, 168, 246, 253, 380, 494 |
| NarI | GGCGCC | 1 cut(s) | 247 |
| NdeII | GATC | 2 cut(s) | 55, 601 |
| NheI | GCTAGC | 1 cut(s) | 158 |
| NlaIII | CATG | 1 cut(s) | 689 |
| NlaIV | GGNNCC | 2 cut(s) | 248, 270 |
| PagI | TCATGA | 1 cut(s) | 685 |
| PdmI | GAANNNNTTC | 1 cut(s) | 624 |
| PfeI | GAWTC | 1 cut(s) | 351 |
| PfoI | TCCNGGA | 2 cut(s) | 346, 387 |
| PkrI | GCNGC | 5 cut(s) | 39, 131, 304, 331, 360 |
| PleI | GAGTC | 3 cut(s) | 16, 64, 434 |
| PluTI | GGCGCC | 1 cut(s) | 250 |
| PpsI | GAGTC | 3 cut(s) | 16, 64, 434 |
| PshAI | GACNNNNGTC | 1 cut(s) | 138 |
| Psp6I | CCWGG | 4 cut(s) | 235, 271, 346, 387 |
| PspFI | CCCAGC | 4 cut(s) | 105, 332, 374, 615 |
| PspGI | CCWGG | 4 cut(s) | 235, 271, 346, 387 |
| PspN4I | GGNNCC | 2 cut(s) | 248, 270 |
| PspPI | GGNCC | 2 cut(s) | 175, 548 |
| PstI | CTGCAG | 1 cut(s) | 78 |
| PsuI | RGATCY | 1 cut(s) | 55 |
| RsaI | GTAC | 1 cut(s) | 458 |
| RsaNI | GTAC | 1 cut(s) | 457 |
| SacII | CCGCGG | 1 cut(s) | 220 |
| SalI | GTCGAC | 1 cut(s) | 67 |
| SaqAI | TTAA | 3 cut(s) | 578, 587, 663 |
| SatI | GCNGC | 5 cut(s) | 38, 130, 303, 330, 359 |
| Sau3AI | GATC | 2 cut(s) | 55, 601 |
| Sau96I | GGNCC | 2 cut(s) | 175, 548 |
| SchI | GAGTC | 3 cut(s) | 17, 64, 434 |
| ScrFI | CCNGG | 4 cut(s) | 237, 273, 348, 389 |
| SduI | GDGCHC | 1 cut(s) | 232 |
| SfaNI | GCATC | 1 cut(s) | 646 |
| SfcI | CTRYAG | 1 cut(s) | 74 |
| SfoI | GGCGCC | 1 cut(s) | 248 |
| Sfr303I | CCGCGG | 1 cut(s) | 220 |
| SgrBI | CCGCGG | 1 cut(s) | 220 |
| SinI | GGWCC | 1 cut(s) | 548 |
| SmlI | CTYRAG | 2 cut(s) | 452, 662 |
| SmoI | CTYRAG | 2 cut(s) | 452, 662 |
| Sse9I | AATT | 1 cut(s) | 365 |
| SsiI | CCGC | 8 cut(s) | 53, 109, 217, 219, 240, 263, 303, 356 |
| SspDI | GGCGCC | 1 cut(s) | 246 |
| SspMI | CTAG | 3 cut(s) | 159, 191, 606 |
| StyD4I | CCNGG | 4 cut(s) | 235, 271, 346, 387 |
| TaaI | ACNGT | 2 cut(s) | 552, 651 |
| TaiI | ACGT | 1 cut(s) | 673 |
| TaqI | TCGA | 2 cut(s) | 68, 418 |
| TasI | AATT | 1 cut(s) | 365 |
| TauI | GCSGC | 1 cut(s) | 305 |
| TfiI | GAWTC | 1 cut(s) | 351 |
| Tru1I | TTAA | 3 cut(s) | 578, 587, 663 |
| Tru9I | TTAA | 3 cut(s) | 578, 587, 663 |
| TscAI | CASTG | 3 cut(s) | 188, 237, 257 |
| TseI | GCWGC | 4 cut(s) | 37, 129, 329, 358 |
| TspDTI | ATGAA | 2 cut(s) | 225, 674 |
| TspGWI | ACGGA | 1 cut(s) | 462 |
| TspRI | CASTG | 3 cut(s) | 188, 237, 257 |
| Vha464I | CTTAAG | 1 cut(s) | 662 |
| VpaK11BI | GGWCC | 1 cut(s) | 548 |
| XapI | RAATTY | 1 cut(s) | 365 |
| XmiI | GTMKAC | 1 cut(s) | 68 |
| XmnI | GAANNNNTTC | 1 cut(s) | 624 |
| XspI | CTAG | 3 cut(s) | 159, 191, 606 |