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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 827 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 26 |
| AciI | CCGC | 1 cut(s) | 398 |
| AclWI | GGATC | 3 cut(s) | 2, 596, 657 |
| AcoI | YGGCCR | 1 cut(s) | 228 |
| AcsI | RAATTY | 2 cut(s) | 23, 531 |
| AcuI | CTGAAG | 1 cut(s) | 366 |
| AcvI | CACGTG | 2 cut(s) | 614, 632 |
| AdeI | CACNNNGTG | 1 cut(s) | 632 |
| AfaI | GTAC | 2 cut(s) | 56, 725 |
| AfeI | AGCGCT | 1 cut(s) | 387 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 26, 64, 226, 237, 582 |
| AflII | CTTAAG | 1 cut(s) | 182 |
| AflIII | ACRYGT | 2 cut(s) | 291, 595 |
| AgsI | TTSAA | 5 cut(s) | 154, 283, 445, 499, 853 |
| AjiI | CACGTC | 1 cut(s) | 596 |
| AluBI | AGCT | 2 cut(s) | 451, 542 |
| AluI | AGCT | 2 cut(s) | 451, 542 |
| Alw26I | GTCTC | 2 cut(s) | 317, 472 |
| AlwI | GGATC | 3 cut(s) | 2, 596, 657 |
| Aor51HI | AGCGCT | 1 cut(s) | 387 |
| AoxI | GGCC | 2 cut(s) | 228, 512 |
| ApoI | RAATTY | 2 cut(s) | 23, 531 |
| AspLEI | GCGC | 2 cut(s) | 300, 388 |
| AspS9I | GGNCC | 2 cut(s) | 400, 513 |
| AvaII | GGWCC | 1 cut(s) | 400 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 38, 71 |
| BbrPI | CACGTG | 2 cut(s) | 614, 632 |
| BbsI | GAAGAC | 1 cut(s) | 161 |
| BccI | CCATC | 1 cut(s) | 66 |
| BceAI | ACGGC | 1 cut(s) | 215 |
| BclI | TGATCA | 1 cut(s) | 453 |
| BcoDI | GTCTC | 2 cut(s) | 317, 472 |
| BfaI | CTAG | 1 cut(s) | 395 |
| BfmI | CTRYAG | 1 cut(s) | 697 |
| BfoI | RGCGCY | 1 cut(s) | 389 |
| BfrI | CTTAAG | 1 cut(s) | 182 |
| Bme18I | GGWCC | 1 cut(s) | 400 |
| BmgBI | CACGTC | 1 cut(s) | 596 |
| BmgT120I | GGNCC | 2 cut(s) | 400, 513 |
| BmrI | ACTGGG | 1 cut(s) | 528 |
| BmsI | GCATC | 4 cut(s) | 39, 166, 654, 874 |
| BmuI | ACTGGG | 1 cut(s) | 528 |
| BpiI | GAAGAC | 1 cut(s) | 161 |
| BpmI | CTGGAG | 1 cut(s) | 434 |
| BpuEI | CTTGAG | 1 cut(s) | 71 |
| BsaAI | YACGTR | 2 cut(s) | 614, 632 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 26, 64, 226, 237, 582 |
| Bse1I | ACTGG | 3 cut(s) | 88, 403, 523 |
| BseGI | GGATG | 2 cut(s) | 181, 889 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 26, 64, 226, 237, 582 |
| BseMII | CTCAG | 2 cut(s) | 54, 465 |
| BseNI | ACTGG | 3 cut(s) | 88, 403, 523 |
| BshFI | GGCC | 2 cut(s) | 230, 514 |
| BslFI | GGGAC | 3 cut(s) | 201, 535, 654 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 26, 64, 226, 237, 582 |
| BsmAI | GTCTC | 2 cut(s) | 317, 472 |
| BsmFI | GGGAC | 3 cut(s) | 201, 535, 654 |
| BsnI | GGCC | 2 cut(s) | 230, 514 |
| Bsp143I | GATC | 5 cut(s) | 7, 351, 453, 601, 649 |
| BspACI | CCGC | 1 cut(s) | 398 |
| BspANI | GGCC | 2 cut(s) | 230, 514 |
| BspCNI | CTCAG | 2 cut(s) | 53, 466 |
| BspHI | TCATGA | 2 cut(s) | 205, 817 |
| BspPI | GGATC | 3 cut(s) | 2, 596, 657 |
| BspTI | CTTAAG | 1 cut(s) | 182 |
| BsrI | ACTGG | 3 cut(s) | 88, 403, 523 |
| BssMI | GATC | 5 cut(s) | 7, 351, 453, 601, 649 |
| Bst4CI | ACNGT | 2 cut(s) | 171, 734 |
| BstAFI | CTTAAG | 1 cut(s) | 182 |
| BstBAI | YACGTR | 2 cut(s) | 614, 632 |
| BstC8I | GCNNGC | 1 cut(s) | 254 |
| BstDEI | CTNAG | 4 cut(s) | 40, 474, 823, 873 |
| BstF5I | GGATG | 2 cut(s) | 181, 889 |
| BstH2I | RGCGCY | 1 cut(s) | 389 |
| BstHHI | GCGC | 2 cut(s) | 300, 388 |
| BstKTI | GATC | 5 cut(s) | 10, 354, 456, 604, 652 |
| BstMAI | GTCTC | 2 cut(s) | 317, 472 |
| BstMBI | GATC | 5 cut(s) | 7, 351, 453, 601, 649 |
| BstNSI | RCATGY | 1 cut(s) | 295 |
| BstSFI | CTRYAG | 1 cut(s) | 697 |
| BstV2I | GAAGAC | 1 cut(s) | 161 |
| BsuRI | GGCC | 2 cut(s) | 230, 514 |
| BtrI | CACGTC | 1 cut(s) | 596 |
| BtsCI | GGATG | 2 cut(s) | 181, 889 |
| BtsIMutI | CAGTG | 1 cut(s) | 516 |
| Cac8I | GCNNGC | 1 cut(s) | 254 |
| CciI | TCATGA | 2 cut(s) | 205, 817 |
| CfoI | GCGC | 2 cut(s) | 300, 388 |
| Cfr13I | GGNCC | 2 cut(s) | 400, 513 |
| Csp6I | GTAC | 2 cut(s) | 55, 724 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 304, 339 |
| CviAII | CATG | 5 cut(s) | 206, 292, 644, 693, 818 |
| CviQI | GTAC | 2 cut(s) | 55, 724 |
| DdeI | CTNAG | 4 cut(s) | 40, 474, 823, 873 |
| DpnI | GATC | 5 cut(s) | 9, 353, 455, 603, 651 |
| DpnII | GATC | 5 cut(s) | 7, 351, 453, 601, 649 |
| DraIII | CACNNNGTG | 1 cut(s) | 632 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 827 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 827 |
| EaeI | YGGCCR | 1 cut(s) | 228 |
| Eco47I | GGWCC | 1 cut(s) | 400 |
| Eco47III | AGCGCT | 1 cut(s) | 387 |
| Eco57I | CTGAAG | 1 cut(s) | 366 |
| Eco72I | CACGTG | 2 cut(s) | 614, 632 |
| FaeI | CATG | 5 cut(s) | 209, 295, 647, 696, 821 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 852, 884 |
| FaqI | GGGAC | 3 cut(s) | 201, 535, 654 |
| FatI | CATG | 5 cut(s) | 205, 291, 643, 692, 817 |
| FbaI | TGATCA | 1 cut(s) | 453 |
| FokI | GGATG | 2 cut(s) | 188, 896 |
| FspBI | CTAG | 1 cut(s) | 395 |
| GlaI | GCGC | 2 cut(s) | 299, 387 |
| GsuI | CTGGAG | 1 cut(s) | 434 |
| HaeII | RGCGCY | 1 cut(s) | 389 |
| HaeIII | GGCC | 2 cut(s) | 230, 514 |
| HhaI | GCGC | 2 cut(s) | 300, 388 |
| Hin1II | CATG | 5 cut(s) | 209, 295, 647, 696, 821 |
| Hin6I | GCGC | 2 cut(s) | 298, 386 |
| HinP1I | GCGC | 2 cut(s) | 298, 386 |
| HincII | GTYRAC | 3 cut(s) | 274, 682, 832 |
| HindII | GTYRAC | 3 cut(s) | 274, 682, 832 |
| HinfI | GANTC | 5 cut(s) | 38, 246, 361, 432, 779 |
| Hpy166II | GTNNAC | 3 cut(s) | 274, 682, 832 |
| Hpy188I | TCNGA | 2 cut(s) | 43, 73 |
| Hpy188III | TCNNGA | 5 cut(s) | 206, 496, 536, 818, 896 |
| Hpy8I | GTNNAC | 3 cut(s) | 274, 682, 832 |
| HpyAV | CCTTC | 4 cut(s) | 38, 321, 451, 803 |
| HpyCH4III | ACNGT | 2 cut(s) | 171, 734 |
| HpyCH4IV | ACGT | 4 cut(s) | 190, 595, 613, 631 |
| HpyCH4V | TGCA | 5 cut(s) | 466, 581, 626, 667, 845 |
| HpyF3I | CTNAG | 4 cut(s) | 40, 474, 823, 873 |
| HpySE526I | ACGT | 4 cut(s) | 190, 595, 613, 631 |
| Hsp92II | CATG | 5 cut(s) | 209, 295, 647, 696, 821 |
| HspAI | GCGC | 2 cut(s) | 298, 386 |
| Ksp22I | TGATCA | 1 cut(s) | 453 |
| Kzo9I | GATC | 5 cut(s) | 7, 351, 453, 601, 649 |
| LmnI | GCTCC | 1 cut(s) | 222 |
| LpnPI | CCDG | 8 cut(s) | 33, 69, 234, 398, 416, 496, 504, 754 |
| LweI | GCATC | 4 cut(s) | 39, 166, 654, 874 |
| MaeI | CTAG | 1 cut(s) | 395 |
| MaeII | ACGT | 4 cut(s) | 190, 595, 613, 631 |
| MalI | GATC | 5 cut(s) | 9, 353, 455, 603, 651 |
| MboI | GATC | 5 cut(s) | 7, 351, 453, 601, 649 |
| MboII | GAAGA | 2 cut(s) | 166, 353 |
| MfeI | CAATTG | 1 cut(s) | 840 |
| MluCI | AATT | 6 cut(s) | 23, 316, 531, 544, 760, 840 |
| MlyI | GAGTC | 3 cut(s) | 32, 355, 788 |
| MmeI | TCCRAC | 1 cut(s) | 35 |
| MnlI | CCTC | 4 cut(s) | 481, 787, 806, 856 |
| MseI | TTAA | 2 cut(s) | 183, 234 |
| MspCI | CTTAAG | 1 cut(s) | 182 |
| MunI | CAATTG | 1 cut(s) | 840 |
| NdeII | GATC | 5 cut(s) | 7, 351, 453, 601, 649 |
| NlaIII | CATG | 5 cut(s) | 209, 295, 647, 696, 821 |
| NspI | RCATGY | 1 cut(s) | 295 |
| PagI | TCATGA | 2 cut(s) | 205, 817 |
| PciI | ACATGT | 1 cut(s) | 291 |
| PfeI | GAWTC | 2 cut(s) | 246, 432 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 26 |
| PleI | GAGTC | 3 cut(s) | 32, 355, 787 |
| PmaCI | CACGTG | 2 cut(s) | 614, 632 |
| PmlI | CACGTG | 2 cut(s) | 614, 632 |
| PpsI | GAGTC | 3 cut(s) | 32, 355, 787 |
| Ppu21I | YACGTR | 2 cut(s) | 614, 632 |
| PscI | ACATGT | 1 cut(s) | 291 |
| PspCI | CACGTG | 2 cut(s) | 614, 632 |
| PspPI | GGNCC | 2 cut(s) | 400, 513 |
| RsaI | GTAC | 2 cut(s) | 56, 725 |
| RsaNI | GTAC | 2 cut(s) | 55, 724 |
| SaqAI | TTAA | 2 cut(s) | 183, 234 |
| Sau3AI | GATC | 5 cut(s) | 7, 351, 453, 601, 649 |
| Sau96I | GGNCC | 2 cut(s) | 400, 513 |
| SchI | GAGTC | 3 cut(s) | 32, 355, 788 |
| SfaNI | GCATC | 4 cut(s) | 39, 166, 654, 874 |
| SfcI | CTRYAG | 1 cut(s) | 697 |
| SinI | GGWCC | 1 cut(s) | 400 |
| SmlI | CTYRAG | 2 cut(s) | 50, 182 |
| SmoI | CTYRAG | 2 cut(s) | 50, 182 |
| Sse9I | AATT | 6 cut(s) | 23, 316, 531, 544, 760, 840 |
| SsiI | CCGC | 1 cut(s) | 398 |
| SspMI | CTAG | 1 cut(s) | 395 |
| TaaI | ACNGT | 2 cut(s) | 171, 734 |
| TaiI | ACGT | 4 cut(s) | 193, 598, 616, 634 |
| TaqI | TCGA | 1 cut(s) | 16 |
| TasI | AATT | 6 cut(s) | 23, 316, 531, 544, 760, 840 |
| TfiI | GAWTC | 2 cut(s) | 246, 432 |
| Tru1I | TTAA | 2 cut(s) | 183, 234 |
| Tru9I | TTAA | 2 cut(s) | 183, 234 |
| TscAI | CASTG | 1 cut(s) | 523 |
| TspDTI | ATGAA | 5 cut(s) | 150, 194, 564, 572, 702 |
| TspRI | CASTG | 1 cut(s) | 523 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 26 |
| Vha464I | CTTAAG | 1 cut(s) | 182 |
| VpaK11BI | GGWCC | 1 cut(s) | 400 |
| XapI | RAATTY | 2 cut(s) | 23, 531 |
| XceI | RCATGY | 1 cut(s) | 295 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 699 |
| XspI | CTAG | 1 cut(s) | 395 |